mRNA_H-paniculata_contig17883.4288.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17883.4288.1
Unique NamemRNA_H-paniculata_contig17883.4288.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: D7G571_ECTSI (O-phosphoseryl-tRNA(Sec) selenium transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G571_ECTSI)

HSP 1 Score: 288 bits (737), Expect = 1.140e-91
Identity = 155/214 (72.43%), Postives = 174/214 (81.31%), Query Frame = 1
Query:    1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETT----SRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAIRKAK 630
            RAMAVGRVDAVVQSTDKNF+VPVGGAVVCGP+  FIEQVGKSYAGRAS+ PCLDLFITLLSMG+EGW+RLL++RE LVEPFR RLR +A ++GERLLESS NTISFA+TLD+L RK         S G +G  +   + AAF GSMLFTR VSGTRVVPR Q K V G+ F GYGASVTGYPHDYLTAACA GLS  EL +F  RL+KA+RKAK
Sbjct:  268 RAMAVGRVDAVVQSTDKNFLVPVGGAVVCGPDATFIEQVGKSYAGRASSGPCLDLFITLLSMGQEGWRRLLAERETLVEPFRRRLREVAESNGERLLESSGNTISFAVTLDSLVRKQSTAACALESNGVTGTASGAPASAAFFGSMLFTRCVSGTRVVPREQHKCVGGIDFNGYGASVTGYPHDYLTAACAAGLSTEELDEFLIRLDKALRKAK 481          
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A1Z5KK06_FISSO (O-phosphoseryl-tRNA(Sec) selenium transferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KK06_FISSO)

HSP 1 Score: 208 bits (530), Expect = 1.180e-61
Identity = 113/210 (53.81%), Postives = 149/210 (70.95%), Query Frame = 1
Query:    1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAIRKAK 630
            RA  VGRVDA+V STDKNF+VPVGGA+V  P+   I+ +GK YAGRAS++P LDLFITLLSMG +G+Q+LL DR+  +E F +RL ++A  HGERLL+  +NTISF ITLDTL R   E  S   + Y        + LG+MLF+R VSGTRV+PR + KT+ G  F G+G+S   +PH Y+TAACA+G+  +E+ +F  RL+K I + K
Sbjct:  274 RACVVGRVDAIVCSTDKNFLVPVGGAIVLSPHESIIQNIGKVYAGRASSSPILDLFITLLSMGLKGYQKLLQDRQQALENFAQRLSAVAEKHGERLLQCPSNTISFGITLDTLARPRDE--SEDETAYLESIRKPISALGAMLFSRCVSGTRVIPRLEQKTMGGQVFAGFGSSHDAFPHAYMTAACAIGVHPSEVDEFLVRLDKTIHEFK 481          
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: B7FV74_PHATC (O-phosphoseryl-tRNA(Sec) selenium transferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FV74_PHATC)

HSP 1 Score: 206 bits (525), Expect = 1.120e-60
Identity = 113/206 (54.85%), Postives = 144/206 (69.90%), Query Frame = 1
Query:    1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAI 618
            RA AVGRVDA+V STDKNFMVP+GGA+V  P+   I+ VGK YAGRASA+P LDLFITL SMG  G+Q+LL+ R  L+  F ERL+ +A  +GER+LE  TN ISF +TLD L R   +        Y    S   + LG+MLF R VSGTRVVPRG  + + G++F G+G+S   YPH YLTAACA+GL+A+E  DF +RL++ +
Sbjct:  298 RACAVGRVDAIVCSTDKNFMVPIGGAIVLSPDESLIQNVGKVYAGRASASPMLDLFITLCSMGLRGYQQLLTSRRILLPTFTERLKEVANKYGERVLECRTNCISFGVTLDGLVRPPRQ--DEDDVAYRTSVSRDVSSLGAMLFQRCVSGTRVVPRGTVQRMGGMEFCGFGSSHDAYPHAYLTAACAIGLTASEGDDFFTRLDQTL 501          
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A7S4IXG5_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IXG5_9STRA)

HSP 1 Score: 202 bits (514), Expect = 3.040e-60
Identity = 111/207 (53.62%), Postives = 143/207 (69.08%), Query Frame = 1
Query:    1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAIR 621
            RA  VGRVDA+V STDKNF+VPVGGA+V  P  D  + +GK Y GRAS +P LDLFITLLSMG +G++ LL++R  LV  F ++LRS+A  HGER+L    NTISF +TLD LT          GS   +  SS  ++ GS+LF R VSGTRVVPRGQ K +    F G+G+S + + H YLTAACA+G+S A++ +FS+RL KA +
Sbjct:  188 RACVVGRVDAIVCSTDKNFLVPVGGAIVMSPKSDVTKSIGKIYPGRASGSPILDLFITLLSMGLDGYKGLLAERRRLVGVFEQKLRSVAEKHGERMLVCPRNTISFGVTLDHLT----------GSQSEDGDSSEVSYFGSILFMRCVSGTRVVPRGQDKKMGNDLFEGFGSSTSNFAHSYLTAACAIGVSEADIDEFSNRLGKAFK 384          
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A1E7FQQ3_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQQ3_9STRA)

HSP 1 Score: 203 bits (517), Expect = 1.640e-59
Identity = 108/206 (52.43%), Postives = 142/206 (68.93%), Query Frame = 1
Query:    1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAI 618
            RA  VGRVDAVV STDKNF+VPVGGA++  P+ + I +VGK YAGRAS++P +DLFITLLSMG  G++RLL +R +++E F ERLR +A  HGER+L    NT+SF +TLD L R   +        Y    +      G+MLF+R VSGTRVVPR Q K++ G  F G+G+S   YPH Y+TAACA+G+S  E+ +F  RL+K +
Sbjct:  290 RACVVGRVDAVVCSTDKNFLVPVGGAIIISPSKNIIGEVGKVYAGRASSSPIVDLFITLLSMGMNGYKRLLKERTSVLETFPERLREVAEKHGERILVCPNNTVSFGLTLDGLARP--KEVDELDENYTQSTAKEITSFGAMLFSRCVSGTRVVPRSQLKSIGGQDFIGFGSSTNEYPHAYMTAACAIGVSIFEIEEFYVRLDKTL 493          
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A7S1ZJX1_TRICV (O-phosphoseryl-tRNA(Sec) selenium transferase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJX1_TRICV)

HSP 1 Score: 200 bits (508), Expect = 2.120e-59
Identity = 112/207 (54.11%), Postives = 139/207 (67.15%), Query Frame = 1
Query:    1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAIR 621
            RA AVGRVDAV+ STDKNF+VPVGGAVV  P+   I++VGK Y GRAS+AP LDLFITLLSMG +G++ LL +R    E F ++   +A  HGER L    NTISF ITLD L     +    GG       S  A++ GSMLFTR VSGTRVVPR Q K + G  F G+G+S   +PH YLTAACA+G++  E  +F SRL++A +
Sbjct:  163 RACAVGRVDAVICSTDKNFLVPVGGAVVMSPSESVIQRVGKIYPGRASSAPVLDLFITLLSMGMDGYRSLLEERATYAEAFAKKFEEVAKKHGERALVCPRNTISFGITLDKLEGGDDDDGDIGGPEEKT--SLDASYFGSMLFTRCVSGTRVVPRSQTKKMGGDTFRGFGSSTEDFPHSYLTAACAIGMTRDEAEEFFSRLDRAFK 367          
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A448Z7C0_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7C0_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.400e-58
Identity = 107/206 (51.94%), Postives = 140/206 (67.96%), Query Frame = 1
Query:    1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAI 618
            RA  VGRVDA+V STDKNF+VPVGGA++  PN   I  VGK YAGRAS++P +DLFITLLSMG  G++RLL +R  ++E F ++L+ ++  HGERLL    NTISF +TLD L R   +  S     Y        +  G+MLF+R VSGTRVVPR Q K + G  F G+G+S + YPH Y+TAACA+G+S  E+ +F  RL+K +
Sbjct:  298 RACVVGRVDAIVCSTDKNFLVPVGGAIIASPNKKVIGDVGKVYAGRASSSPIVDLFITLLSMGMNGYKRLLKERTTILETFPKKLQEISEKHGERLLSCPANTISFGLTLDGLARPKLDDESE--EDYTKSIGKEISSFGAMLFSRCVSGTRVVPRSQLKIMGGESFVGFGSSTSQYPHAYMTAACAIGVSIQEVEEFYVRLDKTL 501          
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A7S0Y830_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y830_9STRA)

HSP 1 Score: 200 bits (509), Expect = 2.160e-58
Identity = 109/210 (51.90%), Postives = 143/210 (68.10%), Query Frame = 1
Query:    1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAIRKAK 630
            RA  VGRVDA+V STDKNF+VPVGGA++  PN   I+ VGK YAGRAS++P +DLFITLLSMG  G++RLL +R  ++E F +RL ++A  HGERLL    NTISF +TLD L R   +  S     Y        +  G+MLF+R VSGTRVVPR Q K + G  F G+G+S   YP+ Y+TAACA+G+S  E+ +F  RL+K +++ K
Sbjct:  287 RACVVGRVDAIVCSTDKNFLVPVGGAIIASPNKTIIKDVGKMYAGRASSSPIVDLFITLLSMGLTGYKRLLKERTEILETFPQRLSAVAEKHGERLLICPNNTISFGVTLDGLARPKQDDES--DQDYTKSIDKEISSFGAMLFSRCVSGTRVVPRSQLKIMGGETFVGFGSSTEQYPYAYMTAACAIGVSLQEIDEFYVRLDKTLKEFK 494          
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A8J2WPB6_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WPB6_9STRA)

HSP 1 Score: 195 bits (496), Expect = 2.200e-56
Identity = 112/210 (53.33%), Postives = 134/210 (63.81%), Query Frame = 1
Query:    1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRG-QAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAIRKA 627
            RA  VGRVD VV STDKNF+VPVGGAVV G + D I+ +G++Y GRASA PC+DL  TLL +G+ GW+ LL +REA +E FR  L  +A  HGERLL++  N ISF +TL  L  K      R      N         GSMLFTR VSGTRVV R   AK +AG  F G+GAS   YP  Y TAACA+G S  ELADF  RL++A  +A
Sbjct:  286 RASRVGRVDVVVASTDKNFLVPVGGAVVAGNDADIIDTIGRAYPGRASATPCVDLLATLLGLGRNGWRSLLDEREAQLEGFRSSLEDVARKHGERLLDTPHNRISFGVTLSALAAKA-----RRVKDDDNAVRDRCTKFGSMLFTRCVSGTRVVARETDAKDIAGYSFVGWGASCDDYPEPYFTAACALGASGRELADFVGRLDRAFGQA 490          
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A6G0XQ56_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XQ56_9STRA)

HSP 1 Score: 193 bits (491), Expect = 5.020e-56
Identity = 106/206 (51.46%), Postives = 139/206 (67.48%), Query Frame = 1
Query:    1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAI 618
            +A  VGRVDA +QSTDKNF+VPVGG+++CGPN  F++++GK Y GRAS AP LDLFIT+L +G+EG++ LL +R+ALV  F+E+L   A A GERLL +  N ISF ITL  + ++               ++  A FLGSMLF+R VSGTRVV    AKT+AG  F G+GA    Y   YLTAACA+G++  E+  F  RL KA+
Sbjct:  274 QAFRVGRVDACIQSTDKNFLVPVGGSIICGPNAAFVQEIGKMYPGRASNAPLLDLFITMLHLGREGYKSLLDERKALVPYFKEQLSLAADACGERLLHTPHNDISFCITLANVIKEK--------------QADAATFLGSMLFSRRVSGTRVVSTTDAKTIAGHAFQGFGAHANAYTGPYLTAACAIGMTKEEIDLFVQRLRKAL 465          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G571_ECTSI1.140e-9172.43O-phosphoseryl-tRNA(Sec) selenium transferase n=2 ... [more]
A0A1Z5KK06_FISSO1.180e-6153.81O-phosphoseryl-tRNA(Sec) selenium transferase n=2 ... [more]
B7FV74_PHATC1.120e-6054.85O-phosphoseryl-tRNA(Sec) selenium transferase n=2 ... [more]
A0A7S4IXG5_9STRA3.040e-6053.62O-phosphoseryl-tRNA(Sec) selenium transferase (Fra... [more]
A0A1E7FQQ3_9STRA1.640e-5952.43O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A7S1ZJX1_TRICV2.120e-5954.11O-phosphoseryl-tRNA(Sec) selenium transferase (Fra... [more]
A0A448Z7C0_9STRA1.400e-5851.94O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A7S0Y830_9STRA2.160e-5851.90O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A8J2WPB6_9STRA2.200e-5653.33O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]
A0A6G0XQ56_9STRA5.020e-5651.46O-phosphoseryl-tRNA(Sec) selenium transferase n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17883contigH-paniculata_contig17883:2906..5084 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score288.9
Seed ortholog evalue1.9e-75
Seed eggNOG ortholog2880.D7G571
Preferred nameSEPSECS
KEGG rclassRC02965,RC02966
KEGG koko:K03341
KEGG ReactionR08224
KEGG Pathwayko00450,ko00970,map00450,map00970
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0001514,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006412,GO:0006414,GO:0006417,GO:0006451,GO:0006518,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009069,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016259,GO:0016740,GO:0016785,GO:0019222,GO:0019538,GO:0019752,GO:0031323,GO:0031326,GO:0032268,GO:0034248,GO:0034641,GO:0034645,GO:0042802,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0097159,GO:0098621,GO:0140098,GO:0140101,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:2000112
EggNOG free text desc.transferase activity, transferring selenium-containing groups
EggNOG OGsCOG0076@1,KOG3843@2759
Ec32 ortholog descriptionO-phosphoseryl-tRNA(Sec) selenium transferase
Ec32 orthologEc-14_006440.1
EC2.9.1.2
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons4
Model size630
Cds size624
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17883.4288.1prot_H-paniculata_contig17883.4288.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17883 2906..5078 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929395.3732214-CDS-H-paniculata_contig17883:2905..31431622929395.3732214-CDS-H-paniculata_contig17883:2905..3143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17883 2906..3143 -
1691480843.4620886-CDS-H-paniculata_contig17883:2905..31431691480843.4620886-CDS-H-paniculata_contig17883:2905..3143Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17883 2906..3143 -
1622929395.3879015-CDS-H-paniculata_contig17883:3681..38281622929395.3879015-CDS-H-paniculata_contig17883:3681..3828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17883 3682..3828 -
1691480843.4721286-CDS-H-paniculata_contig17883:3681..38281691480843.4721286-CDS-H-paniculata_contig17883:3681..3828Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17883 3682..3828 -
1622929395.3979683-CDS-H-paniculata_contig17883:4364..44951622929395.3979683-CDS-H-paniculata_contig17883:4364..4495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17883 4365..4495 -
1691480843.479503-CDS-H-paniculata_contig17883:4364..44951691480843.479503-CDS-H-paniculata_contig17883:4364..4495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17883 4365..4495 -
1622929395.4078672-CDS-H-paniculata_contig17883:4970..50781622929395.4078672-CDS-H-paniculata_contig17883:4970..5078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17883 4971..5078 -
1691480843.4869635-CDS-H-paniculata_contig17883:4970..50781691480843.4869635-CDS-H-paniculata_contig17883:4970..5078Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17883 4971..5078 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929395.4242094-UTR-H-paniculata_contig17883:5078..50841622929395.4242094-UTR-H-paniculata_contig17883:5078..5084Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17883 5079..5084 -
1691480843.494472-UTR-H-paniculata_contig17883:5078..50841691480843.494472-UTR-H-paniculata_contig17883:5078..5084Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17883 5079..5084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17883.4288.1

>prot_H-paniculata_contig17883.4288.1 ID=prot_H-paniculata_contig17883.4288.1|Name=mRNA_H-paniculata_contig17883.4288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp
MAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPC
LDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTN
TISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTR
VVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRL
EKAIRKAK
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mRNA from alignment at H-paniculata_contig17883:2906..5084-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17883.4288.1 ID=mRNA_H-paniculata_contig17883.4288.1|Name=mRNA_H-paniculata_contig17883.4288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2179bp|location=Sequence derived from alignment at H-paniculata_contig17883:2906..5084- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCGATGGCTGTCGGAAGGGTCGATGCTGTGGTCCAAAGCACCGACAA AAACTTCATGGTGCCGGTTGGGGGAGCTGTTGTATGCGGTCCGAACCCTG ACTTCATCGAACAGGTACGGTAAATGGTCGTGCAAGGGCCAACCCCTTTA GCACCCGTTCTCGTCTAATCCCTATATAACCCGAACCTCAAAAATAGCGG ACACGAAACCTTTGGCATGGTCATCGGGATAGAAAGCTCGCCTCTGTTCA CTCAGATAGTGCGATACAGAATGTACGTACGGCACAGATAGCAGGTGGTT GACATGGTGACATTTTTCTACCCGCAGCGTCTGCAACGCTCCATATATTT TGAAACAGTCGTCAACCAGCAGAAGATATGCCGCCAAATATGCCAATATT AACTATAACCCCGTCCAGAGCGGTACAGCATCAACACCAATAACATCGTT GTTACCTTATGGTTTTCACCACCACTGGAAAGCGCTATCGGTATGTAACT TTTGGTTTTGTGTTTCTCTCGCCTGCGCTAACTGTCTCTTCTCCCTTTCC GCCCATGTAACTTTTCATTTTTATTTGCGAGCATTTCAGGTCGGTAAGAG CTATGCAGGCCGCGCGAGCGCTGCGCCTTGCCTGGACCTCTTCATCACGT TACTAAGCATGGGGAAAGAAGGATGGCAACGCCTCCTCAGCGACCGCGAA GCCTTGGTGGAACCATTCAGGTGGACGAATGAAAAATAGACGTCTTGAGT GATGTACCTGCCGTGAGTGGGGAAAAAACAAAGCGCGTGTGAGAGACTCG TTTGCTTTGGAAAGGCGCGAAGTTCTCTTTGTTTTTATAGATGCGGAAGG AGCGGGGGCAGGGGTCTTGAATTACGTTGTGCTGTGCTTGAAACATGGCA AGTACGCGCTGGTAGTATACTGTGAATATTGAAAGAAAGCCATAGTCAAA CAATTTATCTAAGGTTCTGTGAACCACTTCTTTGTGCATGTGATTCAATT TATTTATTTTATTAGCAATCTTTTGATCCTTTCTCCTCCTCCTCCTCCTC CTCCTGCTGCTGCTTCTGGGTCGTCTGTTTTTTGCTTTATTGCCCCATTA CGGAAAGACATAGAGCTTTGCTTTGCGCGGTAATGTATTGTGGCCTGTGA GAAACTCCCCCAGAAATGCTGTCTCTTGGCATGTACAGAGTTTGAGGTGC AAATTGTCCGTCCGGTGCCCCTGTGTTGTATGCCGGCTGCTGCCACCCGT GTACAGGGAACGGCTGCGCAGTCTAGCAGCGGCACACGGCGAGAGATTGC TGGAGTCGAGCACCAACACGATTTCGTTTGCCATCACACTCGACACCCTC ACACGGAAGGTATACGAAACCACCTCCCGCGGCGGCAGCGGTTATTACAA TTTGTGTCCACCTCTGAAGCGGTCATGTAGTGGGCATGTTAATGAGCGAT GCTAGTTATATACTGCCTCGGACGTGAAAGTATTTGCGGCACCACTCTTT GCTTCAGAGACAGCGAGGCTACGTTGGCGGGCACGCTCTGTCCTTAGCGG TTTGTAGCCCTCGTGTGCGGTAGGCAAGTCAAGCTTTACATCCTTTCCTG ACTCGCCCTCTCGACATGGTGCTCGTACTCCCCCCCCCCCCCTCCCCTCT CCCCAACATTCCAGCTTAATTCGGTCACCAATTTCTTCAAGTCGTCGGTA TTCTCAAGCATGATGCCGCCAATTATCTAACTTCACTACCCAATTCCCTG AACTCCGAAAATCTTGCCACGTAGCTACAGACAAGGGCTGAACACATCCA TGTTAGTTGATAAGAACCCCACGTGCTCTGTTTCATGTCCTCCCCATTGC TTCGCCGACTATGGTCGATCCAGCCACAACCCGAACGAGAACCAGGCAAT GTTGCCCCAGCTGCTGCCGCAACCCCCGCCGGCATGAGCAGTCGTTCCAG CGGCGCTGCGTTTCTGGGTTCCATGCTTTTCACTCGGTTCGTGTCGGGCA CGCGCGTAGTTCCGCGGGGACAGGCAAAAACCGTTGCAGGCGTGAAATTC ACCGGATACGGGGCCAGCGTGACGGGTTATCCACATGACTACCTGACGGC AGCGTGCGCGGTGGGACTGTCGGCCGCAGAACTCGCCGATTTTTCGTCGA GGCTCGAAAAGGCCATTCGGAAAGCCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig17883:2906..5084-

>mRNA_H-paniculata_contig17883.4288.1 ID=mRNA_H-paniculata_contig17883.4288.1|Name=mRNA_H-paniculata_contig17883.4288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig17883:2906..5084- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGTCGGAAGGGTCGATGCTGTGGTCCAAAGCACCGACAAAAACTT
CATGGTGCCGGTTGGGGGAGCTGTTGTATGCGGTCCGAACCCTGACTTCA
TCGAACAGATGGCTGTCGGAAGGGTCGATGCTGTGGTCCAAAGCACCGAC
AAAAACTTCATGGTGCCGGTTGGGGGAGCTGTTGTATGCGGTCCGAACCC
TGACTTCATCGAACAGGTCGGTAAGAGCTATGCAGGCCGCGCGAGCGCTG
CGCCTTGCCTGGACCTCTTCATCACGTTACTAAGCATGGGGAAAGAAGGA
TGGCAACGCCTCCTCAGCGACCGCGAAGCCTTGGTGGAACCATTCAGGTC
GGTAAGAGCTATGCAGGCCGCGCGAGCGCTGCGCCTTGCCTGGACCTCTT
CATCACGTTACTAAGCATGGGGAAAGAAGGATGGCAACGCCTCCTCAGCG
ACCGCGAAGCCTTGGTGGAACCATTCAGGGAACGGCTGCGCAGTCTAGCA
GCGGCACACGGCGAGAGATTGCTGGAGTCGAGCACCAACACGATTTCGTT
TGCCATCACACTCGACACCCTCACACGGAAGGTATACGAAACCACCTCCC
GCGGCGGCAGCGGTTATTACAATTTGGAACGGCTGCGCAGTCTAGCAGCG
GCACACGGCGAGAGATTGCTGGAGTCGAGCACCAACACGATTTCGTTTGC
CATCACACTCGACACCCTCACACGGAAGGTATACGAAACCACCTCCCGCG
GCGGCAGCGGTTATTACAATTTTCGTTCCAGCGGCGCTGCGTTTCTGGGT
TCCATGCTTTTCACTCGGTTCGTGTCGGGCACGCGCGTAGTTCCGCGGGG
ACAGGCAAAAACCGTTGCAGGCGTGAAATTCACCGGATACGGGGCCAGCG
TGACGGGTTATCCACATGACTACCTGACGGCAGCGTGCGCGGTGGGACTG
TCGGCCGCAGAACTCGCCGATTTTTCGTCGAGGCTCGAAAAGGCCATTCG
GAAAGCCAAGTCGTTCCAGCGGCGCTGCGTTTCTGGGTTCCATGCTTTTC
ACTCGGTTCGTGTCGGGCACGCGCGTAGTTCCGCGGGGACAGGCAAAAAC
CGTTGCAGGCGTGAAATTCACCGGATACGGGGCCAGCGTGACGGGTTATC
CACATGACTACCTGACGGCAGCGTGCGCGGTGGGACTGTCGGCCGCAGAA
CTCGCCGATTTTTCGTCGAGGCTCGAAAAGGCCATTCGGAAAGCCAAG
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