mRNA_H-paniculata_contig17883.4288.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: D7G571_ECTSI (O-phosphoseryl-tRNA(Sec) selenium transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G571_ECTSI) HSP 1 Score: 288 bits (737), Expect = 1.140e-91 Identity = 155/214 (72.43%), Postives = 174/214 (81.31%), Query Frame = 1
Query: 1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETT----SRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAIRKAK 630
RAMAVGRVDAVVQSTDKNF+VPVGGAVVCGP+ FIEQVGKSYAGRAS+ PCLDLFITLLSMG+EGW+RLL++RE LVEPFR RLR +A ++GERLLESS NTISFA+TLD+L RK S G +G + + AAF GSMLFTR VSGTRVVPR Q K V G+ F GYGASVTGYPHDYLTAACA GLS EL +F RL+KA+RKAK
Sbjct: 268 RAMAVGRVDAVVQSTDKNFLVPVGGAVVCGPDATFIEQVGKSYAGRASSGPCLDLFITLLSMGQEGWRRLLAERETLVEPFRRRLREVAESNGERLLESSGNTISFAVTLDSLVRKQSTAACALESNGVTGTASGAPASAAFFGSMLFTRCVSGTRVVPREQHKCVGGIDFNGYGASVTGYPHDYLTAACAAGLSTEELDEFLIRLDKALRKAK 481
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A1Z5KK06_FISSO (O-phosphoseryl-tRNA(Sec) selenium transferase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KK06_FISSO) HSP 1 Score: 208 bits (530), Expect = 1.180e-61 Identity = 113/210 (53.81%), Postives = 149/210 (70.95%), Query Frame = 1
Query: 1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAIRKAK 630
RA VGRVDA+V STDKNF+VPVGGA+V P+ I+ +GK YAGRAS++P LDLFITLLSMG +G+Q+LL DR+ +E F +RL ++A HGERLL+ +NTISF ITLDTL R E S + Y + LG+MLF+R VSGTRV+PR + KT+ G F G+G+S +PH Y+TAACA+G+ +E+ +F RL+K I + K
Sbjct: 274 RACVVGRVDAIVCSTDKNFLVPVGGAIVLSPHESIIQNIGKVYAGRASSSPILDLFITLLSMGLKGYQKLLQDRQQALENFAQRLSAVAEKHGERLLQCPSNTISFGITLDTLARPRDE--SEDETAYLESIRKPISALGAMLFSRCVSGTRVIPRLEQKTMGGQVFAGFGSSHDAFPHAYMTAACAIGVHPSEVDEFLVRLDKTIHEFK 481
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: B7FV74_PHATC (O-phosphoseryl-tRNA(Sec) selenium transferase n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FV74_PHATC) HSP 1 Score: 206 bits (525), Expect = 1.120e-60 Identity = 113/206 (54.85%), Postives = 144/206 (69.90%), Query Frame = 1
Query: 1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAI 618
RA AVGRVDA+V STDKNFMVP+GGA+V P+ I+ VGK YAGRASA+P LDLFITL SMG G+Q+LL+ R L+ F ERL+ +A +GER+LE TN ISF +TLD L R + Y S + LG+MLF R VSGTRVVPRG + + G++F G+G+S YPH YLTAACA+GL+A+E DF +RL++ +
Sbjct: 298 RACAVGRVDAIVCSTDKNFMVPIGGAIVLSPDESLIQNVGKVYAGRASASPMLDLFITLCSMGLRGYQQLLTSRRILLPTFTERLKEVANKYGERVLECRTNCISFGVTLDGLVRPPRQ--DEDDVAYRTSVSRDVSSLGAMLFQRCVSGTRVVPRGTVQRMGGMEFCGFGSSHDAYPHAYLTAACAIGLTASEGDDFFTRLDQTL 501
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A7S4IXG5_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IXG5_9STRA) HSP 1 Score: 202 bits (514), Expect = 3.040e-60 Identity = 111/207 (53.62%), Postives = 143/207 (69.08%), Query Frame = 1
Query: 1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAIR 621
RA VGRVDA+V STDKNF+VPVGGA+V P D + +GK Y GRAS +P LDLFITLLSMG +G++ LL++R LV F ++LRS+A HGER+L NTISF +TLD LT GS + SS ++ GS+LF R VSGTRVVPRGQ K + F G+G+S + + H YLTAACA+G+S A++ +FS+RL KA +
Sbjct: 188 RACVVGRVDAIVCSTDKNFLVPVGGAIVMSPKSDVTKSIGKIYPGRASGSPILDLFITLLSMGLDGYKGLLAERRRLVGVFEQKLRSVAEKHGERMLVCPRNTISFGVTLDHLT----------GSQSEDGDSSEVSYFGSILFMRCVSGTRVVPRGQDKKMGNDLFEGFGSSTSNFAHSYLTAACAIGVSEADIDEFSNRLGKAFK 384
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A1E7FQQ3_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FQQ3_9STRA) HSP 1 Score: 203 bits (517), Expect = 1.640e-59 Identity = 108/206 (52.43%), Postives = 142/206 (68.93%), Query Frame = 1
Query: 1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAI 618
RA VGRVDAVV STDKNF+VPVGGA++ P+ + I +VGK YAGRAS++P +DLFITLLSMG G++RLL +R +++E F ERLR +A HGER+L NT+SF +TLD L R + Y + G+MLF+R VSGTRVVPR Q K++ G F G+G+S YPH Y+TAACA+G+S E+ +F RL+K +
Sbjct: 290 RACVVGRVDAVVCSTDKNFLVPVGGAIIISPSKNIIGEVGKVYAGRASSSPIVDLFITLLSMGMNGYKRLLKERTSVLETFPERLREVAEKHGERILVCPNNTVSFGLTLDGLARP--KEVDELDENYTQSTAKEITSFGAMLFSRCVSGTRVVPRSQLKSIGGQDFIGFGSSTNEYPHAYMTAACAIGVSIFEIEEFYVRLDKTL 493
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A7S1ZJX1_TRICV (O-phosphoseryl-tRNA(Sec) selenium transferase (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJX1_TRICV) HSP 1 Score: 200 bits (508), Expect = 2.120e-59 Identity = 112/207 (54.11%), Postives = 139/207 (67.15%), Query Frame = 1
Query: 1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAIR 621
RA AVGRVDAV+ STDKNF+VPVGGAVV P+ I++VGK Y GRAS+AP LDLFITLLSMG +G++ LL +R E F ++ +A HGER L NTISF ITLD L + GG S A++ GSMLFTR VSGTRVVPR Q K + G F G+G+S +PH YLTAACA+G++ E +F SRL++A +
Sbjct: 163 RACAVGRVDAVICSTDKNFLVPVGGAVVMSPSESVIQRVGKIYPGRASSAPVLDLFITLLSMGMDGYRSLLEERATYAEAFAKKFEEVAKKHGERALVCPRNTISFGITLDKLEGGDDDDGDIGGPEEKT--SLDASYFGSMLFTRCVSGTRVVPRSQTKKMGGDTFRGFGSSTEDFPHSYLTAACAIGMTRDEAEEFFSRLDRAFK 367
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A448Z7C0_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7C0_9STRA) HSP 1 Score: 201 bits (511), Expect = 1.400e-58 Identity = 107/206 (51.94%), Postives = 140/206 (67.96%), Query Frame = 1
Query: 1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAI 618
RA VGRVDA+V STDKNF+VPVGGA++ PN I VGK YAGRAS++P +DLFITLLSMG G++RLL +R ++E F ++L+ ++ HGERLL NTISF +TLD L R + S Y + G+MLF+R VSGTRVVPR Q K + G F G+G+S + YPH Y+TAACA+G+S E+ +F RL+K +
Sbjct: 298 RACVVGRVDAIVCSTDKNFLVPVGGAIIASPNKKVIGDVGKVYAGRASSSPIVDLFITLLSMGMNGYKRLLKERTTILETFPKKLQEISEKHGERLLSCPANTISFGLTLDGLARPKLDDESE--EDYTKSIGKEISSFGAMLFSRCVSGTRVVPRSQLKIMGGESFVGFGSSTSQYPHAYMTAACAIGVSIQEVEEFYVRLDKTL 501
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A7S0Y830_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y830_9STRA) HSP 1 Score: 200 bits (509), Expect = 2.160e-58 Identity = 109/210 (51.90%), Postives = 143/210 (68.10%), Query Frame = 1
Query: 1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAIRKAK 630
RA VGRVDA+V STDKNF+VPVGGA++ PN I+ VGK YAGRAS++P +DLFITLLSMG G++RLL +R ++E F +RL ++A HGERLL NTISF +TLD L R + S Y + G+MLF+R VSGTRVVPR Q K + G F G+G+S YP+ Y+TAACA+G+S E+ +F RL+K +++ K
Sbjct: 287 RACVVGRVDAIVCSTDKNFLVPVGGAIIASPNKTIIKDVGKMYAGRASSSPIVDLFITLLSMGLTGYKRLLKERTEILETFPQRLSAVAEKHGERLLICPNNTISFGVTLDGLARPKQDDES--DQDYTKSIDKEISSFGAMLFSRCVSGTRVVPRSQLKIMGGETFVGFGSSTEQYPYAYMTAACAIGVSLQEIDEFYVRLDKTLKEFK 494
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A8J2WPB6_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WPB6_9STRA) HSP 1 Score: 195 bits (496), Expect = 2.200e-56 Identity = 112/210 (53.33%), Postives = 134/210 (63.81%), Query Frame = 1
Query: 1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRG-QAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAIRKA 627
RA VGRVD VV STDKNF+VPVGGAVV G + D I+ +G++Y GRASA PC+DL TLL +G+ GW+ LL +REA +E FR L +A HGERLL++ N ISF +TL L K R N GSMLFTR VSGTRVV R AK +AG F G+GAS YP Y TAACA+G S ELADF RL++A +A
Sbjct: 286 RASRVGRVDVVVASTDKNFLVPVGGAVVAGNDADIIDTIGRAYPGRASATPCVDLLATLLGLGRNGWRSLLDEREAQLEGFRSSLEDVARKHGERLLDTPHNRISFGVTLSALAAKA-----RRVKDDDNAVRDRCTKFGSMLFTRCVSGTRVVARETDAKDIAGYSFVGWGASCDDYPEPYFTAACALGASGRELADFVGRLDRAFGQA 490
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Match: A0A6G0XQ56_9STRA (O-phosphoseryl-tRNA(Sec) selenium transferase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XQ56_9STRA) HSP 1 Score: 193 bits (491), Expect = 5.020e-56 Identity = 106/206 (51.46%), Postives = 139/206 (67.48%), Query Frame = 1
Query: 1 RAMAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCLDLFITLLSMGKEGWQRLLSDREALVEPFRERLRSLAAAHGERLLESSTNTISFAITLDTLTRKVYETTSRGGSGYYNFRSSGAAFLGSMLFTRFVSGTRVVPRGQAKTVAGVKFTGYGASVTGYPHDYLTAACAVGLSAAELADFSSRLEKAI 618
+A VGRVDA +QSTDKNF+VPVGG+++CGPN F++++GK Y GRAS AP LDLFIT+L +G+EG++ LL +R+ALV F+E+L A A GERLL + N ISF ITL + ++ ++ A FLGSMLF+R VSGTRVV AKT+AG F G+GA Y YLTAACA+G++ E+ F RL KA+
Sbjct: 274 QAFRVGRVDACIQSTDKNFLVPVGGSIICGPNAAFVQEIGKMYPGRASNAPLLDLFITMLHLGREGYKSLLDERKALVPYFKEQLSLAADACGERLLHTPHNDISFCITLANVIKEK--------------QADAATFLGSMLFSRRVSGTRVVSTTDAKTIAGHAFQGFGAHANAYTGPYLTAACAIGMTKEEIDLFVQRLRKAL 465 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17883.4288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17883.4288.1 >prot_H-paniculata_contig17883.4288.1 ID=prot_H-paniculata_contig17883.4288.1|Name=mRNA_H-paniculata_contig17883.4288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=208bp MAVGRVDAVVQSTDKNFMVPVGGAVVCGPNPDFIEQVGKSYAGRASAAPCback to top mRNA from alignment at H-paniculata_contig17883:2906..5084- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17883.4288.1 ID=mRNA_H-paniculata_contig17883.4288.1|Name=mRNA_H-paniculata_contig17883.4288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2179bp|location=Sequence derived from alignment at H-paniculata_contig17883:2906..5084- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17883:2906..5084- >mRNA_H-paniculata_contig17883.4288.1 ID=mRNA_H-paniculata_contig17883.4288.1|Name=mRNA_H-paniculata_contig17883.4288.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig17883:2906..5084- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |