mRNA_H-paniculata_contig17846.4271.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17846.4271.1
Unique NamemRNA_H-paniculata_contig17846.4271.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A401H4R8_9APHY (Uncharacterized protein n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H4R8_9APHY)

HSP 1 Score: 101 bits (251), Expect = 1.000e-21
Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 1
Query:    1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPF 501
            +DE K  + + F + DLG +  + G  V RDR   T+ +SQ SYI  +++R+GF++   + TP++    +S+ +S    +E  ++  +                     YR  VGS MYAS GTRPDI YAV   +R  ++  +  +   KR+FRYLS   DL + +
Sbjct: 1247 IDEVKAQLRKAFGISDLGEIHWILGFAVERDRTARTLALSQTSYINSIIQRFGFEDLKPLTTPMDPNTTLSSAQSPQTTAEAAAMRDI--------------------PYREAVGSLMYASLGTRPDITYAVSFLSRFSDNPGRAHWEAVKRVFRYLSGTKDLKLTY 1393          
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A409WYT1_9AGAR (Uncharacterized protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409WYT1_9AGAR)

HSP 1 Score: 101 bits (251), Expect = 1.000e-21
Identity = 59/169 (34.91%), Postives = 83/169 (49.11%), Query Frame = 1
Query:    1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPFDG 507
            +D FK +I++   + DLG L  + GIE+RR R   TI +SQ SY+    +RYG D    V  P++   +++   SA  PS  +    +                     Y+  VGS MYAS GTRPDI YAV   +R  ++   + +   KRIFRYL    DL + F G
Sbjct: 1275 IDRFKTEIARHVGISDLGELHWILGIEIRRIREQRTIHLSQRSYLESTFRRYGIDNLKPVSMPMDPNSRLT---SAQSPSTTEDFARM-----------------RDVPYQEAVGSLMYASLGTRPDITYAVQVVSRFSKNPGPDHWEAVKRIFRYLKGTKDLWLSFGG 1423          
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A6A3A563_HIBSY (Putative ribonuclease H protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A563_HIBSY)

HSP 1 Score: 99.4 bits (246), Expect = 4.490e-21
Identity = 53/169 (31.36%), Postives = 88/169 (52.07%), Query Frame = 1
Query:    1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPFDG 507
            ++E K  +++ F MKDLGS +++ G+++ RDR N  I +SQ +Y++++L R+   +C  + TP+    K+S+  S     E   +  V                     Y   VGS M+A   TRPDIA AV   +R M +  +E++NT KRI RY+    ++ + + G
Sbjct:  473 IEELKAQLAREFEMKDLGSANNILGMQIHRDRGNRKIWLSQKNYLKKILSRFSMQDCKPISTPLSINFKLSSSMSPSSEEERMEMSRV--------------------PYASAVGSLMFAMICTRPDIAQAVGVVSRYMTNPGKENWNTVKRILRYIKGTSNVALCYGG 621          
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A067SDP3_GALM3 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067SDP3_GALM3)

HSP 1 Score: 98.6 bits (244), Expect = 6.660e-21
Identity = 61/169 (36.09%), Postives = 90/169 (53.25%), Query Frame = 1
Query:    1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPFDG 507
            ++ FK +I + F++ DLG L  + GIEVRR R    I +SQ SY+  +++RYGF++   V  P++  V++++ +S   PS                QE +R R      Y   VGS MYAS GTRPDI YAV   +R         ++  KRIFRYL+   +L + + G
Sbjct:  225 IEWFKTEIVKHFKITDLGELHWILGIEVRRIREERRILLSQRSYLESIIRRYGFEDLKPVSIPMDPNVRLTSDQS---PST--------------TQEFARMR---DIPYHEAVGSLMYASLGTRPDITYAVQAVSRFASKPGIAHWDAVKRIFRYLNGSKNLWLSYGG 373          
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A6S7KSC5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KSC5_PARCT)

HSP 1 Score: 95.1 bits (235), Expect = 9.790e-21
Identity = 54/169 (31.95%), Postives = 82/169 (48.52%), Query Frame = 1
Query:    1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPFDG 507
            ++E K  I   F+++DLG +SH+ G+ ++RDR + T+ ISQ  Y+  VLKR+  +EC  V TP+E   +       + P+                         N  EY+ I+G   Y +T TRPD+A AV   ++ M    QE +   KRI RY+    + GI F  
Sbjct:   42 LEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDETPA-------------------------NIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQA 185          
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A060SJQ5_PYCCI (Uncharacterized protein (Fragment) n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SJQ5_PYCCI)

HSP 1 Score: 98.2 bits (243), Expect = 1.180e-20
Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 1
Query:    1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPF 501
            V E K  + + F + D G +  + G  V RDR N  + +SQ +YI  +++R+G ++   V TP++  V +S   SA  PS P  +G +                     YR  VGS MYAS GTRPDI YAV   +R  ++  +  +N  +R+FRYL     L + +
Sbjct: 1229 VAEVKAKLREAFEISDEGEIHWILGFAVERDRDNRRLSLSQTAYIESIVRRFGLEDAKPVSTPMDPHVALS---SAQSPSTPADIGAM-----------------RDVPYREAVGSLMYASLGTRPDITYAVSILSRFSDNPGRAHWNAVRRVFRYLHGTKHLKLTY 1375          
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 2.100e-20
Identity = 50/169 (29.59%), Postives = 86/169 (50.89%), Query Frame = 1
Query:    1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPFDG 507
            ++E K  +   F+MK+LG    + G+E+  DR   T+ + Q  Y+ +V+ R+   +   V  P E  +K+S  +S    +E               +E+ RG+      Y+ ++GS +Y +T TRPD+AY V Q ++ +E+  Q+ +    R+ RYL T  D GI + G
Sbjct:  119 INEVKMALKSAFKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMKLSKTQSPATDAE---------------REDMRGK-----PYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSG 267          
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 96.7 bits (239), Expect = 4.040e-20
Identity = 52/169 (30.77%), Postives = 86/169 (50.89%), Query Frame = 1
Query:    1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPFDG 507
            +DE K  +   F+MK+LG +  + G+E+  DR  ST+ I Q  YI +V  R+   +   V  P E  +K++  +S    +E               +E+ R +      YR ++G  +Y +T TRPD+AY V Q +R +E+  Q+ +    R+ RYL T  + GI ++G
Sbjct: 1045 IDEVKMALKSAFKMKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPCESGMKLTKMQSPTTNAE---------------REDMRNK-----PYRSLIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKTTKEFGIVYNG 1193          
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A7M5XDS1_9CNID (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XDS1_9CNID)

HSP 1 Score: 92.0 bits (227), Expect = 5.190e-20
Identity = 50/157 (31.85%), Postives = 80/157 (50.96%), Query Frame = 1
Query:    1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYL 471
            ++  K ++++ F M D G ++++ G+ VRRDR    I I Q +Y+R VL+R+G DEC  + TP+E           +KP   KS                         Y+  +GS +YAS GTRPD++Y+V   ++ M    +E +   KR+FRY+
Sbjct:   71 LEREKKNLAEKFDMVDQGEINYILGMRVRRDRQAGIIRIDQSAYLRNVLQRFGMDECRPISTPMETGKSFEKLAPDEKPVNLKS-------------------------YQAAIGSLIYASIGTRPDLSYSVGVLSQYMSHPSEEHWKGVKRVFRYI 202          
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT)

HSP 1 Score: 96.3 bits (238), Expect = 5.500e-20
Identity = 54/169 (31.95%), Postives = 83/169 (49.11%), Query Frame = 1
Query:    1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPFDG 507
            ++E K  I   F+++DLG +SH+ G+ ++RDR + T+ ISQ  Y+  VLKR+  +EC  V TP+E   +       ++P+                         N  EY+ I+G   Y +T TRPD+A AV   ++ M    QE +   KRI RY+    + GI F  
Sbjct: 1048 LEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPA-------------------------NIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQA 1191          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A401H4R8_9APHY1.000e-2132.34Uncharacterized protein n=2 Tax=Sparassis crispa T... [more]
A0A409WYT1_9AGAR1.000e-2134.91Uncharacterized protein n=1 Tax=Gymnopilus dilepis... [more]
A0A6A3A563_HIBSY4.490e-2131.36Putative ribonuclease H protein n=1 Tax=Hibiscus s... [more]
A0A067SDP3_GALM36.660e-2136.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7KSC5_PARCT9.790e-2131.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SJQ5_PYCCI1.180e-2032.93Uncharacterized protein (Fragment) n=1 Tax=Pycnopo... [more]
A0A6A3J8V8_9STRA2.100e-2029.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
H3H572_PHYRM4.040e-2030.77Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A7M5XDS1_9CNID5.190e-2031.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9IUY0_PARCT5.500e-2031.95Retrovirus-related Pol poly from transposon TNT 1-... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17846contigH-paniculata_contig17846:3962..4468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size507
Cds size156
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929393.5216148-UTR-H-paniculata_contig17846:3961..43121622929393.5216148-UTR-H-paniculata_contig17846:3961..4312Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17846 3962..4312 +
1691480842.75072-UTR-H-paniculata_contig17846:3961..43121691480842.75072-UTR-H-paniculata_contig17846:3961..4312Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17846 3962..4312 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929393.5375965-CDS-H-paniculata_contig17846:4312..44681622929393.5375965-CDS-H-paniculata_contig17846:4312..4468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17846 4313..4468 +
1691480842.7592723-CDS-H-paniculata_contig17846:4312..44681691480842.7592723-CDS-H-paniculata_contig17846:4312..4468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17846 4313..4468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17846.4271.1prot_H-paniculata_contig17846.4271.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17846 4313..4468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17846.4271.1

>prot_H-paniculata_contig17846.4271.1 ID=prot_H-paniculata_contig17846.4271.1|Name=mRNA_H-paniculata_contig17846.4271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp
MYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPF
DG
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mRNA from alignment at H-paniculata_contig17846:3962..4468+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17846.4271.1 ID=mRNA_H-paniculata_contig17846.4271.1|Name=mRNA_H-paniculata_contig17846.4271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=507bp|location=Sequence derived from alignment at H-paniculata_contig17846:3962..4468+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGACGAGTTCAAGTACGACATAAGTCAGTGCTTTAGGATGAAAGACTT GGGCTCTCTCTCACACGTGTAGGGAATAGAAGTACGACGTGACCGCCCTA ATAGTACCATACCCATCTCGCAGGGTAGCTACATCCGCGAGGTACTAAAA AGATACGGTTTTGACGAGTGTTGAGGGGTACCCACCCCTGTAGAGGGAAA AGTGAAGATTTCGGCACCCGAGTCGGCCGACAAGCCCTCCGAACCGAAGT CACTTGGAACTGTACTGCCGGACATCGGCGCAGGAATACAAGAAAACAGC AGAGGGAGAAGCGGCAATTCAACTGAATACAGAGGCATAGTAGGATCATT CATGTACGCCTCAACAGGAACTAGGCCTGATATAGCATATGCGGTACACC AAGCAGCACGTCGTATGGAGGACTCATGTCAGGAAGACTTCAATACATGC AAGCGCATTTTCCGTTATCTCAGTACTGTGCCTGACCTCGGCATTCCGTT CGACGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig17846:3962..4468+

>mRNA_H-paniculata_contig17846.4271.1 ID=mRNA_H-paniculata_contig17846.4271.1|Name=mRNA_H-paniculata_contig17846.4271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig17846:3962..4468+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACGCCTCAACAGGAACTAGGCCTGATATAGCATATGCGGTACACCA
AGCAGCACGTCGTATGGAGGACTCATGTCAGGAAGACTTCAATACATGCA
AGCGCATTTTCCGTTATCTCAGTACTGTGCCTGACCTCGGCATTCCGTTC
GACGGTATGTACGCCTCAACAGGAACTAGGCCTGATATAGCATATGCGGT
ACACCAAGCAGCACGTCGTATGGAGGACTCATGTCAGGAAGACTTCAATA
CATGCAAGCGCATTTTCCGTTATCTCAGTACTGTGCCTGACCTCGGCATT
CCGTTCGACGGT
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