mRNA_H-paniculata_contig17846.4271.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A401H4R8_9APHY (Uncharacterized protein n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H4R8_9APHY) HSP 1 Score: 101 bits (251), Expect = 1.000e-21 Identity = 54/167 (32.34%), Postives = 86/167 (51.50%), Query Frame = 1
Query: 1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPF 501
+DE K + + F + DLG + + G V RDR T+ +SQ SYI +++R+GF++ + TP++ +S+ +S +E ++ + YR VGS MYAS GTRPDI YAV +R ++ + + KR+FRYLS DL + +
Sbjct: 1247 IDEVKAQLRKAFGISDLGEIHWILGFAVERDRTARTLALSQTSYINSIIQRFGFEDLKPLTTPMDPNTTLSSAQSPQTTAEAAAMRDI--------------------PYREAVGSLMYASLGTRPDITYAVSFLSRFSDNPGRAHWEAVKRVFRYLSGTKDLKLTY 1393
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A409WYT1_9AGAR (Uncharacterized protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409WYT1_9AGAR) HSP 1 Score: 101 bits (251), Expect = 1.000e-21 Identity = 59/169 (34.91%), Postives = 83/169 (49.11%), Query Frame = 1
Query: 1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPFDG 507
+D FK +I++ + DLG L + GIE+RR R TI +SQ SY+ +RYG D V P++ +++ SA PS + + Y+ VGS MYAS GTRPDI YAV +R ++ + + KRIFRYL DL + F G
Sbjct: 1275 IDRFKTEIARHVGISDLGELHWILGIEIRRIREQRTIHLSQRSYLESTFRRYGIDNLKPVSMPMDPNSRLT---SAQSPSTTEDFARM-----------------RDVPYQEAVGSLMYASLGTRPDITYAVQVVSRFSKNPGPDHWEAVKRIFRYLKGTKDLWLSFGG 1423
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A6A3A563_HIBSY (Putative ribonuclease H protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A563_HIBSY) HSP 1 Score: 99.4 bits (246), Expect = 4.490e-21 Identity = 53/169 (31.36%), Postives = 88/169 (52.07%), Query Frame = 1
Query: 1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPFDG 507
++E K +++ F MKDLGS +++ G+++ RDR N I +SQ +Y++++L R+ +C + TP+ K+S+ S E + V Y VGS M+A TRPDIA AV +R M + +E++NT KRI RY+ ++ + + G
Sbjct: 473 IEELKAQLAREFEMKDLGSANNILGMQIHRDRGNRKIWLSQKNYLKKILSRFSMQDCKPISTPLSINFKLSSSMSPSSEEERMEMSRV--------------------PYASAVGSLMFAMICTRPDIAQAVGVVSRYMTNPGKENWNTVKRILRYIKGTSNVALCYGG 621
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A067SDP3_GALM3 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Galerina marginata (strain CBS 339.88) TaxID=685588 RepID=A0A067SDP3_GALM3) HSP 1 Score: 98.6 bits (244), Expect = 6.660e-21 Identity = 61/169 (36.09%), Postives = 90/169 (53.25%), Query Frame = 1
Query: 1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPFDG 507
++ FK +I + F++ DLG L + GIEVRR R I +SQ SY+ +++RYGF++ V P++ V++++ +S PS QE +R R Y VGS MYAS GTRPDI YAV +R ++ KRIFRYL+ +L + + G
Sbjct: 225 IEWFKTEIVKHFKITDLGELHWILGIEVRRIREERRILLSQRSYLESIIRRYGFEDLKPVSIPMDPNVRLTSDQS---PST--------------TQEFARMR---DIPYHEAVGSLMYASLGTRPDITYAVQAVSRFASKPGIAHWDAVKRIFRYLNGSKNLWLSYGG 373
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A6S7KSC5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KSC5_PARCT) HSP 1 Score: 95.1 bits (235), Expect = 9.790e-21 Identity = 54/169 (31.95%), Postives = 82/169 (48.52%), Query Frame = 1
Query: 1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPFDG 507
++E K I F+++DLG +SH+ G+ ++RDR + T+ ISQ Y+ VLKR+ +EC V TP+E + + P+ N EY+ I+G Y +T TRPD+A AV ++ M QE + KRI RY+ + GI F
Sbjct: 42 LEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDETPA-------------------------NIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQA 185
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A060SJQ5_PYCCI (Uncharacterized protein (Fragment) n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SJQ5_PYCCI) HSP 1 Score: 98.2 bits (243), Expect = 1.180e-20 Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 1
Query: 1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPF 501
V E K + + F + D G + + G V RDR N + +SQ +YI +++R+G ++ V TP++ V +S SA PS P +G + YR VGS MYAS GTRPDI YAV +R ++ + +N +R+FRYL L + +
Sbjct: 1229 VAEVKAKLREAFEISDEGEIHWILGFAVERDRDNRRLSLSQTAYIESIVRRFGLEDAKPVSTPMDPHVALS---SAQSPSTPADIGAM-----------------RDVPYREAVGSLMYASLGTRPDITYAVSILSRFSDNPGRAHWNAVRRVFRYLHGTKHLKLTY 1375
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A6A3J8V8_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3J8V8_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 2.100e-20 Identity = 50/169 (29.59%), Postives = 86/169 (50.89%), Query Frame = 1
Query: 1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPFDG 507
++E K + F+MK+LG + G+E+ DR T+ + Q Y+ +V+ R+ + V P E +K+S +S +E +E+ RG+ Y+ ++GS +Y +T TRPD+AY V Q ++ +E+ Q+ + R+ RYL T D GI + G
Sbjct: 119 INEVKMALKSAFKMKELGEAKFILGMEIDHDRTTGTLMVKQTRYVDDVVNRFNQQDAKAVVNPCETGMKLSKTQSPATDAE---------------REDMRGK-----PYKSLIGSLLYITTCTRPDVAYIVTQLSQFLENPGQQHWKAAIRVLRYLKTTKDFGIVYSG 267
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM) HSP 1 Score: 96.7 bits (239), Expect = 4.040e-20 Identity = 52/169 (30.77%), Postives = 86/169 (50.89%), Query Frame = 1
Query: 1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPFDG 507
+DE K + F+MK+LG + + G+E+ DR ST+ I Q YI +V R+ + V P E +K++ +S +E +E+ R + YR ++G +Y +T TRPD+AY V Q +R +E+ Q+ + R+ RYL T + GI ++G
Sbjct: 1045 IDEVKMALKSAFKMKELGEVKFILGMEIDHDRTASTLMIKQTRYIDDVTSRFNQQDAKAVVNPCESGMKLTKMQSPTTNAE---------------REDMRNK-----PYRSLIGCLLYITTCTRPDVAYIVTQLSRFLENPGQQHWKAAIRVLRYLKTTKEFGIVYNG 1193
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A7M5XDS1_9CNID (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XDS1_9CNID) HSP 1 Score: 92.0 bits (227), Expect = 5.190e-20 Identity = 50/157 (31.85%), Postives = 80/157 (50.96%), Query Frame = 1
Query: 1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYL 471
++ K ++++ F M D G ++++ G+ VRRDR I I Q +Y+R VL+R+G DEC + TP+E +KP KS Y+ +GS +YAS GTRPD++Y+V ++ M +E + KR+FRY+
Sbjct: 71 LEREKKNLAEKFDMVDQGEINYILGMRVRRDRQAGIIRIDQSAYLRNVLQRFGMDECRPISTPMETGKSFEKLAPDEKPVNLKS-------------------------YQAAIGSLIYASIGTRPDLSYSVGVLSQYMSHPSEEHWKGVKRVFRYI 202
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 96.3 bits (238), Expect = 5.500e-20 Identity = 54/169 (31.95%), Postives = 83/169 (49.11%), Query Frame = 1
Query: 1 VDEFKYDISQCFRMKDLGSLSHV*GIEVRRDRPNSTIPISQGSYIREVLKRYGFDEC*GVPTPVEGKVKISAPESADKPSEPKSLGTVLPDIGAGIQENSRGRSGNSTEYRGIVGSFMYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPFDG 507
++E K I F+++DLG +SH+ G+ ++RDR + T+ ISQ Y+ VLKR+ +EC V TP+E + ++P+ N EY+ I+G Y +T TRPD+A AV ++ M QE + KRI RY+ + GI F
Sbjct: 1048 LEEEKVAIGTKFKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPA-------------------------NIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQA 1191 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17846.4271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17846.4271.1 >prot_H-paniculata_contig17846.4271.1 ID=prot_H-paniculata_contig17846.4271.1|Name=mRNA_H-paniculata_contig17846.4271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=52bp MYASTGTRPDIAYAVHQAARRMEDSCQEDFNTCKRIFRYLSTVPDLGIPFback to top mRNA from alignment at H-paniculata_contig17846:3962..4468+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17846.4271.1 ID=mRNA_H-paniculata_contig17846.4271.1|Name=mRNA_H-paniculata_contig17846.4271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=507bp|location=Sequence derived from alignment at H-paniculata_contig17846:3962..4468+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17846:3962..4468+ >mRNA_H-paniculata_contig17846.4271.1 ID=mRNA_H-paniculata_contig17846.4271.1|Name=mRNA_H-paniculata_contig17846.4271.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at H-paniculata_contig17846:3962..4468+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |