mRNA_H-paniculata_contig17828.4266.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17828.4266.1
Unique NamemRNA_H-paniculata_contig17828.4266.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17828.4266.1 vs. uniprot
Match: D7FHR7_ECTSI (ABC-type spermidine/putrescine transport system, ATPase component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHR7_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 2.570e-39
Identity = 69/105 (65.71%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:    1 ISGLRKAVYLGRDVSSLTGKPVRRLLRKKVKENLPG-NNPEYVEIVTDTILGAMDLHKQSRTQDRDLSGGEVYRFAIAMALAEGCSSPTPPVLLLDGVFDKTDER 312
            +SGLRK VY+GR ++S TGK VR+LLR++V  +LPG NN   VE+ T+T+LGA++LH  S T+DRDLSGGEVYRFA+AMALA GC SPTPPVLLLD +FD++D+R
Sbjct:  138 VSGLRKPVYVGRAITSTTGKTVRQLLREEVASHLPGKNNGRQVELTTNTLLGALELHGVSLTKDRDLSGGEVYRFAMAMALARGCGSPTPPVLLLDDMFDRSDKR 242
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BLAST of mRNA_H-paniculata_contig17828.4266.1 vs. uniprot
Match: A0A836CP28_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP28_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.860e-6
Identity = 39/134 (29.10%), Postives = 56/134 (41.79%), Query Frame = 1 
Query:    1 ISGLRKAVYLGRDVSSLTGKPVRRLLRKKVKENLPGNNPEYVEIVTDTILGAMDLHKQSRTQDR------------------------------DLSGGEVYRFAIAMALAEGCSSPTPPVLLLDGVFDKTDER 312
            I+G  + VYL R  +      V   +R ++    P  + E V  + D +L  ++L  ++  +                                DLSGGEV RF +AMALA G + P PPVLL D   D  D+R
Sbjct:  122 ITGDHRMVYLTRHFAHDPRHTVAANVRARIARAAPAQHAEAVAEIADRLLRMVELGAKAAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSGGEVLRFGLAMALAAGVAGPEPPVLLCDEFLDHEDQR 255
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17828.4266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHR7_ECTSI2.570e-3965.71ABC-type spermidine/putrescine transport system, A... [more]
A0A836CP28_9STRA1.860e-629.10P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17828contigH-paniculata_contig17828:163..1691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionABC transporter-like
Ec32 orthologEc-07_006520.1
Exons3
Model size312
Cds size312
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17828.4266.1prot_H-paniculata_contig17828.4266.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17828 163..1691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929392.7337787-CDS-H-paniculata_contig17828:162..2781622929392.7337787-CDS-H-paniculata_contig17828:162..278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17828 163..278 +
1691480842.4660928-CDS-H-paniculata_contig17828:162..2781691480842.4660928-CDS-H-paniculata_contig17828:162..278Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17828 163..278 +
1622929392.7508283-CDS-H-paniculata_contig17828:859..9341622929392.7508283-CDS-H-paniculata_contig17828:859..934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17828 860..934 +
1691480842.4744086-CDS-H-paniculata_contig17828:859..9341691480842.4744086-CDS-H-paniculata_contig17828:859..934Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17828 860..934 +
1622929392.766321-CDS-H-paniculata_contig17828:1570..16911622929392.766321-CDS-H-paniculata_contig17828:1570..1691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17828 1571..1691 +
1691480842.481629-CDS-H-paniculata_contig17828:1570..16911691480842.481629-CDS-H-paniculata_contig17828:1570..1691Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17828 1571..1691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17828.4266.1

>prot_H-paniculata_contig17828.4266.1 ID=prot_H-paniculata_contig17828.4266.1|Name=mRNA_H-paniculata_contig17828.4266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
ISGLRKAVYLGRDVSSLTGKPVRRLLRKKVKENLPGNNPEYVEIVTDTIL
GAMDLHKQSRTQDRDLSGGEVYRFAIAMALAEGCSSPTPPVLLLDGVFDK
TDER
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mRNA from alignment at H-paniculata_contig17828:163..1691+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17828.4266.1 ID=mRNA_H-paniculata_contig17828.4266.1|Name=mRNA_H-paniculata_contig17828.4266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1529bp|location=Sequence derived from alignment at H-paniculata_contig17828:163..1691+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAAGCGGTCTGAGGAAAGCAGTCTACCTGGGAAGGGACGTGAGCAGTCT
CACGGGCAAGCCCGTCCGACGACTTCTGAGAAAGAAAGTCAAGGAGAACC
TTCCGGGGAACAATCCGTAAGTGTTTTTTTATTTTTATGATTTTATGATT
TTGTTCGTTATTTCAAAAAGGGAACGCACGCGGTCCGAAAGTGAGAGTGT
GTTAAATGCCTTGGTAATAATTGCCTTGGATTCTTATCGCGCGGTGGGAG
TAGCAGCCCCACTCGCTCGTCAACGTTGGGAGATAACGGCGGTAATGTTT
TCAAGAGCTTGTACAGTGAGAGTGACGCATAACATTCCCACGCTTCCTCT
CCAAGATACCATGGTATGTGGATTATGACCACATACAATTGGATTTGGGG
CGTGAGCATCTTCCGGGAGCAAGTCGGATTGACTTAACAATATCTTTTTA
TTGGCGGTTAGGACGAGTACGACGTCAATTTATCGCCAGGGTTGGCGGGG
AGGGAGGGGAGTGATGACGTATCGCCCAACGTAATGTATATTGGTCACCT
GTACACCGGTGCTGTTTATCTCTTGTGCGCTATTATTATGCACTTGGTGG
GGGGCATTCATACGTGAGTACGCACAGCTTTTTTTTGTTTTGTTCGTGTG
TGTGTGTGTGTGTTTTTTTTGTTTTTTTTCATTGTCGATGTGTGCAGGGA
ATACGTTGAAATCGTGACGGACACGATCTTGGGGGCTATGGATCTTCATA
AGCAGAGCCGGACACAAGACAGGTGTGTGGGAGGGAGGGGAAATGAGGGG
TAGCTCATGTTGTCCTTACTTAACAAGTGAGGAAGAAAATAGGAGCAACA
ACCAAACAATGCTTTTGAGTAAGCAATTAAATTCTGTAGTAAAAGCAAAA
GTATCAACTGAAAACGCCGTTTGATTTTTTATTCTTTTTCTTGTACGATA
CACGAAAGAAACGCCATTTGGAGTTGCATATTTAGTTATCCTTGAATGTT
GAAACGTCGCTCGCCTTATGACTCATGATATATATATATAGATATATATA
TATAGTTACCGTTTCCGTAGTAGTGACTATCGGTATTACAACGGTAATTG
ATACTACGATACTGATGGATCATCGCCGTAACAACGACCGTTATTCCCAC
GAGAACGGCCATTATTGGACCATGACCATTATTGGACCATGACTATTATT
GGACCATGACCAATATTGGATCATAGCGAAGACCTAATTCTTTCGAGGTG
CGTTGACACACTGCGTATCTCGTAGACATACTCGCATACCAGGCACTATA
CCTGGGGTAAGGGTTGTAGACAAGAGCGTTTTTTTCTCCTTTGTTCTCAA
TTTTTCCTGTGTTCTCAATTAATTTGTGACCAACATTGTTGATTGCTGCG
TTTGCCAGGGATTTGAGTGGAGGAGAGGTGTACCGTTTCGCCATCGCAAT
GGCCCTTGCCGAGGGGTGCTCATCTCCGACACCTCCCGTGCTTCTACTGG
ACGGTGTTTTTGACAAGACTGACGAAAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig17828:163..1691+

>mRNA_H-paniculata_contig17828.4266.1 ID=mRNA_H-paniculata_contig17828.4266.1|Name=mRNA_H-paniculata_contig17828.4266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig17828:163..1691+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATAAGCGGTCTGAGGAAAGCAGTCTACCTGGGAAGGGACGTGAGCAGTCT
CACGGGCAAGCCCGTCCGACGACTTCTGAGAAAGAAAGTCAAGGAGAACC
TTCCGGGGAACAATCCATAAGCGGTCTGAGGAAAGCAGTCTACCTGGGAA
GGGACGTGAGCAGTCTCACGGGCAAGCCCGTCCGACGACTTCTGAGAAAG
AAAGTCAAGGAGAACCTTCCGGGGAACAATCCGGAATACGTTGAAATCGT
GACGGACACGATCTTGGGGGCTATGGATCTTCATAAGCAGAGCCGGACAC
AAGACAGGGAATACGTTGAAATCGTGACGGACACGATCTTGGGGGCTATG
GATCTTCATAAGCAGAGCCGGACACAAGACAGGGATTTGAGTGGAGGAGA
GGTGTACCGTTTCGCCATCGCAATGGCCCTTGCCGAGGGGTGCTCATCTC
CGACACCTCCCGTGCTTCTACTGGACGGTGTTTTTGACAAGACTGACGAA
AGGGGATTTGAGTGGAGGAGAGGTGTACCGTTTCGCCATCGCAATGGCCC
TTGCCGAGGGGTGCTCATCTCCGACACCTCCCGTGCTTCTACTGGACGGT
GTTTTTGACAAGACTGACGAAAGG
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