prot_H-paniculata_contig17828.4266.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17828.4266.1
Unique Nameprot_H-paniculata_contig17828.4266.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length104
Homology
BLAST of mRNA_H-paniculata_contig17828.4266.1 vs. uniprot
Match: D7FHR7_ECTSI (ABC-type spermidine/putrescine transport system, ATPase component n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHR7_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 2.570e-39
Identity = 69/105 (65.71%), Postives = 88/105 (83.81%), Query Frame = 0
Query:    1 ISGLRKAVYLGRDVSSLTGKPVRRLLRKKVKENLPG-NNPEYVEIVTDTILGAMDLHKQSRTQDRDLSGGEVYRFAIAMALAEGCSSPTPPVLLLDGVFDKTDER 104
            +SGLRK VY+GR ++S TGK VR+LLR++V  +LPG NN   VE+ T+T+LGA++LH  S T+DRDLSGGEVYRFA+AMALA GC SPTPPVLLLD +FD++D+R
Sbjct:  138 VSGLRKPVYVGRAITSTTGKTVRQLLREEVASHLPGKNNGRQVELTTNTLLGALELHGVSLTKDRDLSGGEVYRFAMAMALARGCGSPTPPVLLLDDMFDRSDKR 242          
BLAST of mRNA_H-paniculata_contig17828.4266.1 vs. uniprot
Match: A0A836CP28_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP28_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 1.860e-6
Identity = 39/134 (29.10%), Postives = 56/134 (41.79%), Query Frame = 0
Query:    1 ISGLRKAVYLGRDVSSLTGKPVRRLLRKKVKENLPGNNPEYVEIVTDTILGAMDLHKQSRTQDR------------------------------DLSGGEVYRFAIAMALAEGCSSPTPPVLLLDGVFDKTDER 104
            I+G  + VYL R  +      V   +R ++    P  + E V  + D +L  ++L  ++  +                                DLSGGEV RF +AMALA G + P PPVLL D   D  D+R
Sbjct:  122 ITGDHRMVYLTRHFAHDPRHTVAANVRARIARAAPAQHAEAVAEIADRLLRMVELGAKAAGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLSGGEVLRFGLAMALAAGVAGPEPPVLLCDEFLDHEDQR 255          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17828.4266.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHR7_ECTSI2.570e-3965.71ABC-type spermidine/putrescine transport system, A... [more]
A0A836CP28_9STRA1.860e-629.10P-loop containing nucleoside triphosphate hydrolas... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.300coord: 5..104
e-value: 9.3E-6
score: 27.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 8..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17828contigH-paniculata_contig17828:163..1691 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17828.4266.1mRNA_H-paniculata_contig17828.4266.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17828 163..1691 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17828.4266.1 ID=prot_H-paniculata_contig17828.4266.1|Name=mRNA_H-paniculata_contig17828.4266.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
ISGLRKAVYLGRDVSSLTGKPVRRLLRKKVKENLPGNNPEYVEIVTDTIL
GAMDLHKQSRTQDRDLSGGEVYRFAIAMALAEGCSSPTPPVLLLDGVFDK
TDER
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase