prot_H-paniculata_contig1778.4248.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1778.4248.1
Unique Nameprot_H-paniculata_contig1778.4248.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length1069
Homology
BLAST of mRNA_H-paniculata_contig1778.4248.1 vs. uniprot
Match: D7G8F3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F3_ECTSI)

HSP 1 Score: 210 bits (534), Expect = 5.250e-57
Identity = 135/322 (41.93%), Postives = 178/322 (55.28%), Query Frame = 0
Query:  516 MEQALRALNIPLTALSCAEGEIPSALALWCNNP-------NAKKPMETAVRTSPQEAAAAGRVHIAITNECYHPRHLWLAELAAKALPSV-ALYTVDSCSCCPINTFHG---RRTANPSAGG--SVASKEELRRAQDGVLKTVCTELVYRPRLPLEARLQTPVFLGGIGGRAAVPPGFAVDSVRSSMPAYASLDWGILRSLSAQRFPGFGKPFAPSDRSSTTNPSTQDFIALMGGGERAADEVLRQTLEFAFALGASESKPKGAGEAINN---------------GNLQNEISGVGFGGALLHLLRVGSISSLYVVQALLGR 809
            ME  LRALN+PL A+SC +GEIPSAL  WC          N+ +    A   + + +   G  HI I +ECYHP  L L+E    AL    ALY VDS    P+NT  G   R     + GG   V S EE R+ QDG L  V  +L  RPRLPL+ +LQ   F+GG G RA +P  F + +  ++  A A +DW  LR +SA+RFPGFGKP  PS+ +S    S +D I++ GGGER  +  LRQT+  A A      +  G G   ++               G L++E +G+GFGG+LLH LR+GS+SSL VVQA + R
Sbjct:    1 MEGTLRALNVPLVAISCVDGEIPSALTCWCRGSRDGGAADNSSESDTAATGATTKRSPMEGSAHITIMDECYHPTQLSLSEKVRDALRGTGALYAVDSSCVYPVNTSGGGGTRAGVGAATGGVTGVLSPEEFRQTQDGCLPAVLADLTIRPRLPLKPQLQNQTFVGG-GERAMLPREFQLGAGATASSAIA-VDWDKLREISARRFPGFGKPI-PSELAS----SDKDLISIFGGGERVGEMALRQTVHLAVASTPDGQRSAGTGVGSSSHTDGNGGLPPPEGICGRLESETAGLGFGGSLLHFLRLGSVSSLSVVQARIHR 315          
BLAST of mRNA_H-paniculata_contig1778.4248.1 vs. uniprot
Match: L1JJB5_GUITC (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JJB5_GUITC)

HSP 1 Score: 68.2 bits (165), Expect = 4.720e-8
Identity = 60/206 (29.13%), Postives = 87/206 (42.23%), Query Frame = 0
Query:  399 FCNEEWPTRVKERRRILRFPSRGEPP-GTRILYWVRGSFRVRDNLALSVAMWLSRELQMPLQALTFVDPTIGRAATLSCPSDKEHQPRKQHVSPSTHGYDTATPLPFRMAVESSALCEMEQALRALNIPLTALSCAEGEIPSALAL-WCNNPNAKKPME-------TAVRTSPQEAAAAGRVHIAITNECYHPRHLWLAELAAKAL 595
               E WP  +K R R   FP       G  ILY +R S RV DNLALS A+W+S +L++PL A+        R    +  + K+   RK+                   A E+SA+C +  AL AL++PL      E E P  L + W         +        + V+  P +       H  I ++   P+HL+ A LA + L
Sbjct:   68 LVRERWPAAIKLRSRCFSFPKPSHRRNGRHILYLIRKSRRVCDNLALSHALWISDKLKLPLLAMVVTQREGDREGNGTSETTKKRISRKR-------------------AFETSAICSLRHALAALHVPLIGF---ETESPWVLLVQWAVVTETHMIIADDVDFDPSLVKAPPDDVEFPCPFH-GIDSDSIFPQHLYAASLAEETL 250          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1778.4248.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8F3_ECTSI5.250e-5741.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
L1JJB5_GUITC4.720e-829.13Photolyase/cryptochrome alpha/beta domain-containi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620coord: 408..605
e-value: 6.7E-12
score: 47.3
NoneNo IPR availableGENE3D1.10.579.10coord: 880..977
e-value: 1.7E-7
score: 33.1
IPR006050DNA photolyase, N-terminalPROSITEPS51645PHR_CRY_ALPHA_BETAcoord: 426..611
score: 11.778
IPR036155Cryptochrome/photolyase, N-terminal domain superfamilySUPERFAMILY52425Cryptochrome/photolyase, N-terminal domaincoord: 427..533

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1778contigH-paniculata_contig1778:8502..15298 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1778.4248.1mRNA_H-paniculata_contig1778.4248.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1778 8408..17281 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1778.4248.1 ID=prot_H-paniculata_contig1778.4248.1|Name=mRNA_H-paniculata_contig1778.4248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1069bp
MSEKPTRYKRARLFKEDPCILPGFGVVFPLDTCPQDLTIFKSVARPTCTH
ATEESGTAASGCQRQQLFPDIDEGLTAEGESRKMLPSNTFTSSSRDGPFV
GGCVEGSDLNSRGADQHNVNETSPALPSCERQDPSTATHALGDELEEDVN
HSLQVSPSIISTPRLCGAETCSSLARQARATEQSVLAVKASEQRSPTTAQ
VGGTVGTSITNALSNNCSPMRSTEVAAAVSSGRGELVLVASDGEKIGCSR
QGTLPQLTAAASDQQSSTLNSGGEEDLSINGASGKREQQHQHPLMTTPPP
AVSMIVSFFKQPVVGTPSPVSDDKRLSSAASSPTIPMSLASLVSGVPGSG
GGRGRDYCTPPGGRACGPSSSIVGRRAAALGPVRKSPVFRRAADGRSRFC
NEEWPTRVKERRRILRFPSRGEPPGTRILYWVRGSFRVRDNLALSVAMWL
SRELQMPLQALTFVDPTIGRAATLSCPSDKEHQPRKQHVSPSTHGYDTAT
PLPFRMAVESSALCEMEQALRALNIPLTALSCAEGEIPSALALWCNNPNA
KKPMETAVRTSPQEAAAAGRVHIAITNECYHPRHLWLAELAAKALPSVAL
YTVDSCSCCPINTFHGRRTANPSAGGSVASKEELRRAQDGVLKTVCTELV
YRPRLPLEARLQTPVFLGGIGGRAAVPPGFAVDSVRSSMPAYASLDWGIL
RSLSAQRFPGFGKPFAPSDRSSTTNPSTQDFIALMGGGERAADEVLRQTL
EFAFALGASESKPKGAGEAINNGNLQNEISGVGFGGALLHLLRVGSISSL
YVVQALLGRSRDESAHRQGVTTRSNAWARLLDSVLNREYFLYRSYFYYQT
QGRAYVSATTASNDHITSRPNLWKVKDWQHLIPSWVNEELQKGQRDMRQH
PYTPEEIKRAGSTVPSSVEDPLFSAIQVRLMHWGRLHPILGPYWARGILG
MMLLPSQAVALVITLAEDLCLGAAHAGDVVPELLADAFDAFKPNVVPSPP
SGIVPPSSSGGSALCTGSGMTQPIFRGLSVPPISSRDSLESALGGAEALA
RFMSPVSILHDRQQLREC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014729Rossmann-like_a/b/a_fold
IPR006050DNA_photolyase_N
IPR036155Crypto/Photolyase_N_sf