mRNA_H-paniculata_contig1778.4248.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1778.4248.1 vs. uniprot
Match: D7G8F3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F3_ECTSI) HSP 1 Score: 210 bits (534), Expect = 9.840e-57 Identity = 135/322 (41.93%), Postives = 178/322 (55.28%), Query Frame = 2
Query: 1640 MEQALRALNIPLTALSCAEGEIPSALALWCNNP-------NAKKPMETAVRTSPQEAAAAGRVHIAITNECYHPRHLWLAELAAKALPSV-ALYTVDSCSCCPINTFHG---RRTANPSAGG--SVASKEELRRAQDGVLKTVCTELVYRPRLPLEARLQTPVFLGGIGGRAAVPPGFAVDSVRSSMPAYASLDWGILRSLSAQRFPGFGKPFAPSDRSSTTNPSTQDFIALMGGGERAADEVLRQTLEFAFALGASESKPKGAGEAINN---------------GNLQNEISGVGFGGALLHLLRVGSISSLYVVQALLGR 2521
ME LRALN+PL A+SC +GEIPSAL WC N+ + A + + + G HI I +ECYHP L L+E AL ALY VDS P+NT G R + GG V S EE R+ QDG L V +L RPRLPL+ +LQ F+GG G RA +P F + + ++ A A +DW LR +SA+RFPGFGKP PS+ +S S +D I++ GGGER + LRQT+ A A + G G ++ G L++E +G+GFGG+LLH LR+GS+SSL VVQA + R
Sbjct: 1 MEGTLRALNVPLVAISCVDGEIPSALTCWCRGSRDGGAADNSSESDTAATGATTKRSPMEGSAHITIMDECYHPTQLSLSEKVRDALRGTGALYAVDSSCVYPVNTSGGGGTRAGVGAATGGVTGVLSPEEFRQTQDGCLPAVLADLTIRPRLPLKPQLQNQTFVGG-GERAMLPREFQLGAGATASSAIA-VDWDKLREISARRFPGFGKPI-PSELAS----SDKDLISIFGGGERVGEMALRQTVHLAVASTPDGQRSAGTGVGSSSHTDGNGGLPPPEGICGRLESETAGLGFGGSLLHFLRLGSVSSLSVVQARIHR 315
BLAST of mRNA_H-paniculata_contig1778.4248.1 vs. uniprot
Match: L1JJB5_GUITC (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JJB5_GUITC) HSP 1 Score: 68.2 bits (165), Expect = 6.820e-8 Identity = 60/206 (29.13%), Postives = 87/206 (42.23%), Query Frame = 2
Query: 1289 FCNEEWPTRVKERRRILRFPSRGEPP-GTRILYWVRGSFRVRDNLALSVAMWLSRELQMPLQALTFVDPTIGRAATLSCPSDKEHQPRKQHVSPSTHGYDTATPLPFRMAVESSALCEMEQALRALNIPLTALSCAEGEIPSALAL-WCNNPNAKKPME-------TAVRTSPQEAAAAGRVHIAITNECYHPRHLWLAELAAKAL 1879
E WP +K R R FP G ILY +R S RV DNLALS A+W+S +L++PL A+ R + + K+ RK+ A E+SA+C + AL AL++PL E E P L + W + + V+ P + H I ++ P+HL+ A LA + L
Sbjct: 68 LVRERWPAAIKLRSRCFSFPKPSHRRNGRHILYLIRKSRRVCDNLALSHALWISDKLKLPLLAMVVTQREGDREGNGTSETTKKRISRKR-------------------AFETSAICSLRHALAALHVPLIGF---ETESPWVLLVQWAVVTETHMIIADDVDFDPSLVKAPPDDVEFPCPFH-GIDSDSIFPQHLYAASLAEETL 250 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1778.4248.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1778.4248.1 >prot_H-paniculata_contig1778.4248.1 ID=prot_H-paniculata_contig1778.4248.1|Name=mRNA_H-paniculata_contig1778.4248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1069bp MSEKPTRYKRARLFKEDPCILPGFGVVFPLDTCPQDLTIFKSVARPTCTHback to top mRNA from alignment at H-paniculata_contig1778:8408..17281+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1778.4248.1 ID=mRNA_H-paniculata_contig1778.4248.1|Name=mRNA_H-paniculata_contig1778.4248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=8874bp|location=Sequence derived from alignment at H-paniculata_contig1778:8408..17281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1778:8408..17281+ >mRNA_H-paniculata_contig1778.4248.1 ID=mRNA_H-paniculata_contig1778.4248.1|Name=mRNA_H-paniculata_contig1778.4248.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6414bp|location=Sequence derived from alignment at H-paniculata_contig1778:8408..17281+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |