mRNA_H-paniculata_contig17768.4243.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17768.4243.1
Unique NamemRNA_H-paniculata_contig17768.4243.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17768.4243.1 vs. uniprot
Match: A0A6H5KUL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUL2_9PHAE)

HSP 1 Score: 322 bits (824), Expect = 2.690e-102
Identity = 176/255 (69.02%), Postives = 200/255 (78.43%), Query Frame = 1
Query:    1 QVKPTLDDKVSLMIVMCVVFLGDTARGIFFPTLWTYVKSMGGDRITLGYCVGAFSLGR---VMISPYFGRLSTKHGYRSVLMGASGIIFCGAIAYVLADNNASLIAAQILLGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFVLHGKRIMIVGSWVVLNQFTAPAFVMAASAAILSGLLYGVFQDSLPKPK------------KKGKPSEPTAALTA-SDISAAKYLIGAPSDVSL 717
            +V PTLDDK SL+IVMCVVFLGDTARGIFFPTLW YV++MGGDRITLGY VGAFS GR   VMISPYFG LSTKHGYR VLM ASG+I  GA+AY LA   A+LI AQI++GVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPF+GGFLSF++  +RI ++G ++VL  FTAPA+VM  +A +L  LL  VF+DS+PK K            KK  P   T A  A S  SAAKYL+GAPS+VSL
Sbjct:  160 KVSPTLDDKASLVIVMCVVFLGDTARGIFFPTLWKYVQAMGGDRITLGYSVGAFSFGRQVAVMISPYFGGLSTKHGYRKVLMVASGLIALGALAYALAWTTAALIGAQIIMGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFVGGFLSFLIKDRRIPLLGEFLVLTSFTAPAYVMVVAALLLFTLLKLVFEDSIPKGKSTKTSKQVKASTKKSTPLVKTEAEIAYSSGSAAKYLMGAPSEVSL 414          
BLAST of mRNA_H-paniculata_contig17768.4243.1 vs. uniprot
Match: D8LGE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGE0_ECTSI)

HSP 1 Score: 303 bits (776), Expect = 6.050e-97
Identity = 166/240 (69.17%), Postives = 187/240 (77.92%), Query Frame = 1
Query:   46 MCVVFLGDTARGIFFPTLWTYVKSMGGDRITLGYCVGAFSLGR---VMISPYFGRLSTKHGYRSVLMGASGIIFCGAIAYVLADNNASLIAAQILLGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFVLHGKRIMIVGSWVVLNQFTAPAFVMAASAAILSGLLYGVFQDSLPKPK------------KKGKPSEPTAALTA-SDISAAKYLIGAPSDVSL 717
            MCVVFLGDTARGIFFPTLW YV++MGGDRITLGY VGAFSLGR   VMISPYFG LSTKHGYR VLM ASG+I  GA+AY LA   A+LI AQI++GVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPF+GGFLSF++  +RI ++G ++VL  FTAPA+VM  +A +L  LL  VF+DS+P  K            KK  P   T A  A S  SAAKYL+GAPSDVSL
Sbjct:    1 MCVVFLGDTARGIFFPTLWKYVQAMGGDRITLGYSVGAFSLGRQVAVMISPYFGGLSTKHGYRKVLMVASGVIALGALAYALAWTTAALIGAQIIMGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFVGGFLSFLIKDRRIPLLGEFLVLTSFTAPAYVMIVAALVLFALLKLVFEDSIPNGKPTKTSKQVKVSTKKSTPLVKTEAEMAYSSGSAAKYLMGAPSDVSL 240          
BLAST of mRNA_H-paniculata_contig17768.4243.1 vs. uniprot
Match: D8LI50_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI50_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 5.390e-77
Identity = 133/239 (55.65%), Postives = 174/239 (72.80%), Query Frame = 1
Query:    1 QVKPTLDDKVSLMIVMCVVFLGDTARGIFFPTLWTYVKSMGGDRITLGYCVGAFSLGRVMISPYFGRLSTKHGYRSVLMGASGIIFCGAIAYVLADNNASLIAAQILLGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFVLHGKRIMIVGSWVVLNQFTAPAFVMAASAAILSGLLYGVFQDSLPKPKKKGKPSEPTAALTASDISAAKYLIGAPSDVSL 717
            +V+PTLDDK S  +V+  V L DTARGIFFPTLWT+V  +GGD+I LGYCVGAFSLGR ++SP FGR+ST+HGYR  L+ ++ ++  G + Y +AD+  ++  +Q+ LGVGSGTLGVTR YVADK+T EQRTYLLAYTTAVQYAGFT MP LGGF S++L    I ++G +++L QFTAPAF +AA + +L  LL+ VFQD + +     KP++ T        S+AK L G  S V+L
Sbjct:   84 EVRPTLDDKASFAVVLGDVLLVDTARGIFFPTLWTHVSQLGGDKIALGYCVGAFSLGRTLMSPVFGRMSTEHGYRRALLISTALVSFGTLFYAVADSVFTVFLSQVFLGVGSGTLGVTRGYVADKTTKEQRTYLLAYTTAVQYAGFTVMPSLGGFFSYLLGSTEIPLLGRFLMLTQFTAPAFFVAAMSTVLFLLLWFVFQDGIEQ-----KPAKTT--------SSAKELSGTASGVTL 309          
BLAST of mRNA_H-paniculata_contig17768.4243.1 vs. uniprot
Match: D7FUX3_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUX3_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 2.760e-68
Identity = 117/214 (54.67%), Postives = 156/214 (72.90%), Query Frame = 1
Query:   31 SLMIVMCVVFLGDTARGIFFPTLWTYVKSMGGDRITLGYCVGAFSLGRVMISPYFGRLSTKHGYRSVLMGASGIIFCGAIAYVLADNNASLIAAQILLGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFVLHGKRIMIVGSWVVLNQFTAPAFVMAASAAILSGLLYGVFQDSLPKPKKKGKPSEPTAALTASDI 672
            S  IV+  + L DTARGIFFPTLWT+V  +GGD+I LGYCVGAFSLGR ++SP FGR+ST+HGYR   + ++ +I   ++ Y +AD+  ++  +Q+ LG+GSGTLGVTRAYVADK+T EQRTYLLAYTT+VQYAG T MP LGGF S++L    I ++G +++L QFTAPAF +AA + +L  LL+ VFQD + +   K   S    + TAS +
Sbjct:   14 SRSIVLGNLLLIDTARGIFFPTLWTHVIQLGGDKIALGYCVGAFSLGRTLLSPVFGRMSTEHGYRRAFLISTVLIPFASLFYAVADSVLTVFLSQLFLGMGSGTLGVTRAYVADKTTKEQRTYLLAYTTSVQYAGLTVMPILGGFFSYLLGSTEIPLLGRFLLLTQFTAPAFFVAAMSTVLFLLLWSVFQDGIEQKPAKTSSSGKELSGTASGV 227          
BLAST of mRNA_H-paniculata_contig17768.4243.1 vs. uniprot
Match: A0A7S3UZ09_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UZ09_HETAK)

HSP 1 Score: 197 bits (500), Expect = 7.470e-57
Identity = 106/219 (48.40%), Postives = 144/219 (65.75%), Query Frame = 1
Query:   22 DKVSLMIVMCVVFLGDTARGIFFPTLWTYVKSMGGDRITLGYCVGAFSLGRVMISPYFGRLSTKHGYRSVLMGASGIIFCGAIAYVLADNNASLIAAQILLGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFVLHGKRIMIVGSWVVLNQFTAPAFVMAASAAILSGLLYGVFQDSLPKPKKK--GKPSEPTAALTASDI 672
            D VS +++  VVF+GDTARG+ FPTLW  V  +GG  +T G+ V AFS GRV+ SP+FG++ST +GY+ VL  A+ ++  G   Y  A N   LIA Q+++G+GSGTLGVTRAYVAD ST   RT L+AY TA+QY GFT  P +GG LS++L  + + ++   + L Q+TAPA +MAA A +   LL G F+D +P  +      PS P  AL AS +
Sbjct:   45 DWVSFLVIGFVVFIGDTARGLMFPTLWPLVSKLGGTELTQGFTVAAFSFGRVLSSPHFGKMSTDYGYKKVLTFAACVMIAGCFLYATAQNCYWLIAGQVVIGLGSGTLGVTRAYVADNSTKRSRTVLMAYLTALQYGGFTVTPCVGGLLSYLLGDRELSLLPG-LSLTQYTAPALLMAALALVAIALLAGPFRDYVPAERAALARPPSRP--ALPASSV 260          
BLAST of mRNA_H-paniculata_contig17768.4243.1 vs. uniprot
Match: A0A7R9U9D1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9D1_9STRA)

HSP 1 Score: 179 bits (453), Expect = 1.450e-51
Identity = 97/195 (49.74%), Postives = 130/195 (66.67%), Query Frame = 1
Query:   31 SLMIVMCVVFLGDTARGIFFPTLWTYVKSMGGDRITLGYCVGAFSLGRVMISPYFGRLSTKHGYRSVLMGASGIIFCGAIAYVLADNNASLIAAQILLGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFVLHGKRIMI----VGSWVVLNQFTAPAFVMAASAAILSGLLYGVFQD 603
            S  ++  VV LGD+ARG+ FPTLW  V+S+GGDR T G+ VGAFSLGR + SP+ GR S + G++  L   S II  G + Y  A + +SL+ AQIL+GVGSG+LGVTRAYVA+ S+P  RT LLAY TAVQY GFTC PF+G  L+  + G  +++     G   V+++F AP F+ A  A + + LL  VF +
Sbjct:   93 SAAVICAVVLLGDSARGVMFPTLWPLVESLGGDRSTNGFMVGAFSLGRAISSPFIGRASVRMGFQRTLSLCSLIICLGGLLYGTATSISSLLVAQILIGVGSGSLGVTRAYVAELSSPSTRTVLLAYLTAVQYCGFTCTPFIGALLT-QIFGDGVLLGRDRAGHEWVVDKFNAPGFLTAIWAMVNAVLLLVVFAE 286          
BLAST of mRNA_H-paniculata_contig17768.4243.1 vs. uniprot
Match: A0A7S1XVC4_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVC4_9STRA)

HSP 1 Score: 181 bits (459), Expect = 3.350e-50
Identity = 95/191 (49.74%), Postives = 125/191 (65.45%), Query Frame = 1
Query:   31 SLMIVMCVVFLGDTARGIFFPTLWTYVKSMGGDRITLGYCVGAFSLGRVMISPYFGRLSTKHGYRSVLMGASGIIFCGAIAYVLADNNASLIAAQILLGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFVLHGKRIMIVGSWVVLNQFTAPAFVMAASAAILSGLLYGVFQD 603
            S +I+  VV LGD+ARGI FPTLW  V+S+GGDR   GY VG+FS GR + SP  GR S KHGY++ L   S +I  G   Y  A N   LIA QIL+G+GSG+LGVTRAYVA+ S+P  RT LLAY TAVQY GFTC PF+G  L+++  G     + + V +++F AP +  +  A   + LL+  F++
Sbjct:  119 SALIICLVVLLGDSARGIMFPTLWPLVQSLGGDRTVHGYTVGSFSFGRALASPCIGRWSGKHGYKATLGICSLVICLGGFVYATARNLPMLIAGQILIGIGSGSLGVTRAYVAELSSPASRTVLLAYLTAVQYCGFTCTPFIGAILTYIFGGGYT--IANLVEVDKFNAPGYFTSLWAISNAILLFVAFRE 307          
BLAST of mRNA_H-paniculata_contig17768.4243.1 vs. uniprot
Match: A0A836C8M5_9STRA (Major facilitator superfamily domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8M5_9STRA)

HSP 1 Score: 175 bits (443), Expect = 4.770e-48
Identity = 100/210 (47.62%), Postives = 134/210 (63.81%), Query Frame = 1
Query:   16 LDDKVSLMIVMCVVFLGDTARGIFFPTLWTYVKSMGGDRITLGYCVGAFSLGRVMISPYFGRLSTKHGYRSVLMGASGIIFCGAIAYVLADNNASLIAAQILLGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFVL------HGKRIMIVGSWVVL--NQFTAPAFVMAASAAILSGLLYGVFQDSLPKPK 621
            L D  SL  ++ VV +GDTARGI FPTL +YV  MGG++ TLG  V  FSLGRV+ SP  G+ ST++G R VL  A   +  GAI Y LA + A LIAAQ+++G+GSGTLGVTR YVAD++   +RT +LA  TAVQY GF C P LG  L   +       G    + G WV L  +QFTAP +++A ++A ++ L++   +D+ P  K
Sbjct:   50 LADYKSLATILTVVLIGDTARGIVFPTLSSYVILMGGNKSTLGAAVAGFSLGRVIASPLLGKWSTQYGCRRVLAAALSALSLGAILYALASSTAWLIAAQVMMGLGSGTLGVTRGYVADRTPNARRTGMLAMLTAVQYGGFACTPLLGAMLCRAIGDGAWGFGHHFAL-GGWVRLEWSQFTAPGYLLAGASAAVALLVWLCLEDAAPAAK 258          
BLAST of mRNA_H-paniculata_contig17768.4243.1 vs. uniprot
Match: A0A7S2V0P8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V0P8_9STRA)

HSP 1 Score: 172 bits (435), Expect = 7.520e-47
Identity = 99/214 (46.26%), Postives = 133/214 (62.15%), Query Frame = 1
Query:    7 KPTLDDKVSLMIVMCV----VFLGDTARGIFFPTLWTYVKSMGGDRITLGYCVGAFSLGRVMISPYFGRLSTKHGYRSVLMGASGIIFCGAIAYVLADNNASLIAAQILLGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFLSFVLHGKRIMIVGSWVVLNQFTAPAFVMAASAAILSGLLYG-VFQDSLPKPKKKGK 633
            +PT D  +  M   CV    V +GD ARG+ FPTLW  V+S+GGDR T GYCV AFS GR+  SPYFG+LST+ GY+ VL+ A  I   G + Y  A +   L+  Q ++G G+GTLGVTRAYVAD ++  QRT  +AY TA+QYAGFT  P LG   + +L G      G + V ++F+APA+     AA+L GLL    F + +P  +++ K
Sbjct:   55 EPTKDGGIKNMKSFCVIAYMVLVGDAARGLMFPTLWPLVESLGGDRSTQGYCVAAFSFGRIFASPYFGQLSTEKGYKDVLLIAIAITVVGCLTYAHATSTWLLMVGQCVMGFGAGTLGVTRAYVADNTSSAQRTTYIAYITALQYAGFTVCPSLGAAFTLLL-GDDTYSWGPFQV-SKFSAPAY-FHIGAALLGGLLLQFAFDNYIPTARQRAK 265          
BLAST of mRNA_H-paniculata_contig17768.4243.1 vs. uniprot
Match: A0A7S1ZB43_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZB43_TRICV)

HSP 1 Score: 167 bits (424), Expect = 4.170e-45
Identity = 96/199 (48.24%), Postives = 119/199 (59.80%), Query Frame = 1
Query:   16 LDDKVSLMIVMCVVFLGDTARGIFFPTLWTYVKSMGGDRITLGYCVGAFSLGRVMISPYFGRLSTKHGYRSVLMGASGIIFCGAIAYVLADNNAS---LIAAQILLGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMPFLGGFL-SFVLHGKRIMIVGSWVVLNQFTAPAFVMAASAAILSGLLYGVFQ 600
            + DK    IV  V+ +GD +RG+FFPT+W  V+ +GGD +TLGY V AFS GR+M SP FG  S  HGY   L+ +  I+  G + Y    N A    LI  Q +LGVGSGTLGVTRA+VAD +    RT  +A+ TAVQYAGFT  PF G F     + G R +  G + VLN FTAPA+ MA    I   LL   FQ
Sbjct:  136 ISDKTGFFIVCLVILIGDMSRGVFFPTMWPLVQHVGGDTVTLGYSVAAFSFGRIMSSPLFGSWSVTHGYTKTLILSVSILAMGTLLYSQVYNVAKPEFLIFGQTILGVGSGTLGVTRAFVADVTPNRNRTTYMAWLTAVQYAGFTVTPFFGAFFYKIFMDGDRELRSGIF-VLNGFTAPAYFMALICFITLILLVTKFQ 333          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17768.4243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUL2_9PHAE2.690e-10269.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGE0_ECTSI6.050e-9769.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LI50_ECTSI5.390e-7755.65MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FUX3_ECTSI2.760e-6854.67MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3UZ09_HETAK7.470e-5748.40Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7R9U9D1_9STRA1.450e-5149.74Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7S1XVC4_9STRA3.350e-5049.74Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A836C8M5_9STRA4.770e-4847.62Major facilitator superfamily domain-containing pr... [more]
A0A7S2V0P8_9STRA7.520e-4746.26Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1ZB43_TRICV4.170e-4548.24Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17768contigH-paniculata_contig17768:2903..4785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score256.5
Seed ortholog evalue1.2e-65
Seed eggNOG ortholog2880.D8LI50
KEGG koko:K12307
KEGG TC2.A.1
KEGG Pathwayko04142,map04142
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.major facilitator superfamily
EggNOG OGsKOG2325@1,KOG2325@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_005250.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons3
Model size717
Cds size717
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17768.4243.1prot_H-paniculata_contig17768.4243.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17768 2903..4785 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929387.8691516-CDS-H-paniculata_contig17768:2902..30751622929387.8691516-CDS-H-paniculata_contig17768:2902..3075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17768 2903..3075 +
1691480841.0991101-CDS-H-paniculata_contig17768:2902..30751691480841.0991101-CDS-H-paniculata_contig17768:2902..3075Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17768 2903..3075 +
1622929387.881462-CDS-H-paniculata_contig17768:3445..36881622929387.881462-CDS-H-paniculata_contig17768:3445..3688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17768 3446..3688 +
1691480841.1097062-CDS-H-paniculata_contig17768:3445..36881691480841.1097062-CDS-H-paniculata_contig17768:3445..3688Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17768 3446..3688 +
1622929387.8957667-CDS-H-paniculata_contig17768:4484..47851622929387.8957667-CDS-H-paniculata_contig17768:4484..4785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17768 4485..4785 +
1691480841.1179075-CDS-H-paniculata_contig17768:4484..47851691480841.1179075-CDS-H-paniculata_contig17768:4484..4785Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17768 4485..4785 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17768.4243.1

>prot_H-paniculata_contig17768.4243.1 ID=prot_H-paniculata_contig17768.4243.1|Name=mRNA_H-paniculata_contig17768.4243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=239bp
QVKPTLDDKVSLMIVMCVVFLGDTARGIFFPTLWTYVKSMGGDRITLGYC
VGAFSLGRVMISPYFGRLSTKHGYRSVLMGASGIIFCGAIAYVLADNNAS
LIAAQILLGVGSGTLGVTRAYVADKSTPEQRTYLLAYTTAVQYAGFTCMP
FLGGFLSFVLHGKRIMIVGSWVVLNQFTAPAFVMAASAAILSGLLYGVFQ
DSLPKPKKKGKPSEPTAALTASDISAAKYLIGAPSDVSL
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mRNA from alignment at H-paniculata_contig17768:2903..4785+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17768.4243.1 ID=mRNA_H-paniculata_contig17768.4243.1|Name=mRNA_H-paniculata_contig17768.4243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1883bp|location=Sequence derived from alignment at H-paniculata_contig17768:2903..4785+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTCAAACCGACGCTTGACGACAAGGTATCTTTGATGATCGTGATGTG TGTTGTATTCTTGGGAGACACAGCCCGTGGCATCTTCTTCCCGACTTTAT GGACGTACGTGAAGAGCATGGGTGGAGACCGTATCACCCTGGGATACTGC GTGGGGGCCTTCAGCCTCGGCAGGTGCACGTGGCGGGGATAAGTAATTTT TGGTCGCGACCCGAAAAGGCAAAACCGTGCTGAATAGGTTGCATCGAATA TACACAACAAGATTGATACCTAACAGTCCGTGTGTGCCTCGACGGCCATG CTATGTCTTGGACGTGATATGACGTTGGTAGCCAAGTCTATTCACTAGTT TTCGGGAGAAACAACATAGCTAGGCAGAACAGCGTGCATTTGTCGACGAG CAGCTTGTCTGCTTTCACCTAACACCCCCGTCACAGACTTGATTCCTCTT TTCCCCTCTCGTCGCCCGCGGCGTGTCCTCAGTCATCGCTGATCGTCATG GCACCAAGTATTCGTGTGTTGCTGTCGGGTTCTTCTCTTTCAGGGTGATG ATCTCGCCTTATTTTGGAAGGCTGTCGACCAAACACGGATACCGGTCGGT ACTAATGGGCGCCAGCGGGATAATATTTTGCGGGGCAATAGCGTACGTCC TCGCCGATAACAACGCCTCCCTCATCGCGGCGCAGATCCTCCTCGGCGTC GGCAGCGGGACTCTAGGAGTGACGAGGGCCTACGTGGCTGACAAGTCGAC CCCGGAGCAGCGAACCTACCTTCTGGCTTACACAACGTACGCGTCAGGTT AAGGTCATAACCTACAGTCGTGTGCGCTCTTTGGTTTGGCAAAAGTCTAT TGGCATGGCGTATGATTAGAGCCTTGCTTGAAGTGAGCCCGGTCTCGGTA TGTATCACCTCACCTCATTGCCCTCGTATTCTTGCGCCCCACATCTTTTA GAACAGTAGGTTGATGACAACCTATACACACCAGGTACCTTTGTGTCAGG TGTCGAGCTAATAATGACATTACCCTATGAATATGAGTCTCTGCACTTGT TCATGCGGTAGTGCGGAAATGATTAATATATATTTTACGTCAATAGTATC TTCTGGCGGTACATACTTTGGGGTGAATGGTTGATTCGTAGCTGTAGATT AAGAAAAATACAATCTACACGACTCTTGACATCGTGAGGGCACTCTGCAA ACGGTTGGTATAATAGTGTGAGACTCTTCCGTTGCCCTATTCATTTAATG AGCATAATGCAGTCTATGGATCCTGCTACTTCTTTGACCCGCGAGTGATC CATAGTTTCGCACTCCCTGTTGTGCTGTCCCGTGTGCCACCACAATTCTT AAGATGTTGTGAATCAAGGTAATAGCACTCCAATTCGCAATAAACGAAAT ATACCTGGGTATACCTCAACACACTTCGTTCATGAAAGCCAAGTGTAAAA ATGATATATTTACAATGTTCCAAGGTTCTGAGCCTTCTCCTCTGGCATAT GCAATCTTCCACACAGTACGCCCGCTGCTCCCGTCTTTTCTCCTCCCCCC TCTCCCCCCCCCTCTCCCTCCTCAACCGACAGTGCCGTGCAGTATGCCGG TTTCACCTGCATGCCGTTCCTCGGTGGGTTTCTGTCGTTCGTCCTCCACG GCAAACGAATCATGATCGTAGGCAGCTGGGTTGTCCTCAATCAATTTACA GCTCCTGCTTTTGTCATGGCAGCGTCTGCTGCGATCCTATCGGGGTTGCT CTACGGCGTGTTCCAGGATAGCCTCCCCAAGCCGAAGAAGAAGGGAAAGC CTTCGGAGCCCACGGCGGCCCTGACGGCCTCGGATATATCTGCCGCAAAG TACCTTATCGGCGCCCCCAGTGATGTCTCCCTC
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Coding sequence (CDS) from alignment at H-paniculata_contig17768:2903..4785+

>mRNA_H-paniculata_contig17768.4243.1 ID=mRNA_H-paniculata_contig17768.4243.1|Name=mRNA_H-paniculata_contig17768.4243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1434bp|location=Sequence derived from alignment at H-paniculata_contig17768:2903..4785+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTCAAACCGACGCTTGACGACAAGGTATCTTTGATGATCGTGATGTG
TGTTGTATTCTTGGGAGACACAGCCCGTGGCATCTTCTTCCCGACTTTAT
GGACGTACGTGAAGAGCATGGGTGGAGACCGTATCACCCTGGGATACTGC
GTGGGGGCCTTCAGCCTCGGCAGCAGGTCAAACCGACGCTTGACGACAAG
GTATCTTTGATGATCGTGATGTGTGTTGTATTCTTGGGAGACACAGCCCG
TGGCATCTTCTTCCCGACTTTATGGACGTACGTGAAGAGCATGGGTGGAG
ACCGTATCACCCTGGGATACTGCGTGGGGGCCTTCAGCCTCGGCAGGGTG
ATGATCTCGCCTTATTTTGGAAGGCTGTCGACCAAACACGGATACCGGTC
GGTACTAATGGGCGCCAGCGGGATAATATTTTGCGGGGCAATAGCGTACG
TCCTCGCCGATAACAACGCCTCCCTCATCGCGGCGCAGATCCTCCTCGGC
GTCGGCAGCGGGACTCTAGGAGTGACGAGGGCCTACGTGGCTGACAAGTC
GACCCCGGAGCAGCGAACCTACCTTCTGGCTTACACAACGGTGATGATCT
CGCCTTATTTTGGAAGGCTGTCGACCAAACACGGATACCGGTCGGTACTA
ATGGGCGCCAGCGGGATAATATTTTGCGGGGCAATAGCGTACGTCCTCGC
CGATAACAACGCCTCCCTCATCGCGGCGCAGATCCTCCTCGGCGTCGGCA
GCGGGACTCTAGGAGTGACGAGGGCCTACGTGGCTGACAAGTCGACCCCG
GAGCAGCGAACCTACCTTCTGGCTTACACAACTGCCGTGCAGTATGCCGG
TTTCACCTGCATGCCGTTCCTCGGTGGGTTTCTGTCGTTCGTCCTCCACG
GCAAACGAATCATGATCGTAGGCAGCTGGGTTGTCCTCAATCAATTTACA
GCTCCTGCTTTTGTCATGGCAGCGTCTGCTGCGATCCTATCGGGGTTGCT
CTACGGCGTGTTCCAGGATAGCCTCCCCAAGCCGAAGAAGAAGGGAAAGC
CTTCGGAGCCCACGGCGGCCCTGACGGCCTCGGATATATCTGCCGCAAAG
TACCTTATCGGCGCCCCCAGTGATGTCTCCCTCTGCCGTGCAGTATGCCG
GTTTCACCTGCATGCCGTTCCTCGGTGGGTTTCTGTCGTTCGTCCTCCAC
GGCAAACGAATCATGATCGTAGGCAGCTGGGTTGTCCTCAATCAATTTAC
AGCTCCTGCTTTTGTCATGGCAGCGTCTGCTGCGATCCTATCGGGGTTGC
TCTACGGCGTGTTCCAGGATAGCCTCCCCAAGCCGAAGAAGAAGGGAAAG
CCTTCGGAGCCCACGGCGGCCCTGACGGCCTCGGATATATCTGCCGCAAA
GTACCTTATCGGCGCCCCCAGTGATGTCTCCCTC
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