mRNA_H-paniculata_contig17750.4240.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17750.4240.1
Unique NamemRNA_H-paniculata_contig17750.4240.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17750.4240.1 vs. uniprot
Match: D7G626_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G626_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.440e-16
Identity = 69/149 (46.31%), Postives = 82/149 (55.03%), Query Frame = 1 
Query:  316 GHPRYLSFKILAGNVALGEKVAPGSKEIEAATRRMPSTTAMSHASAAHVRDAQTQALRAQRQQFQESSSRSYSHSMSFSPPVEGGSNASSGRTRRFTTAGDGTTINFAATDGATEAELKRRSSGRAGIGRRSFRGMRRIMGKKVTPPDS 762
            GHPRY +FKIL GN ALGE+VAP  KE+EAA RR PS  AM HAS AH +  Q +  RAQ              S S  P   G   +++GR        D   I  +AT   T  E KR + GR  +GR+  RGM+RIMGKK TPP S
Sbjct:  645 GHPRYRAFKILPGNFALGERVAPNEKEVEAAARRKPSRNAMEHASGAHAQS-QLKQNRAQXXXXXXXXXXXXXXSASMGP--NGSPTSTTGR--------DSIGIPRSATAEMTVEETKRSTFGRNSLGRK-LRGMKRIMGKKSTPPTS 781
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17750.4240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G626_ECTSI1.440e-1646.31Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17750contigH-paniculata_contig17750:1485..4963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size843
Cds size843
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929387.3846986-CDS-H-paniculata_contig17750:1484..15211622929387.3846986-CDS-H-paniculata_contig17750:1484..1521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17750 1485..1521 -
1691480840.8316252-CDS-H-paniculata_contig17750:1484..15211691480840.8316252-CDS-H-paniculata_contig17750:1484..1521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17750 1485..1521 -
1622929387.395672-CDS-H-paniculata_contig17750:1699..18661622929387.395672-CDS-H-paniculata_contig17750:1699..1866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17750 1700..1866 -
1691480840.8410513-CDS-H-paniculata_contig17750:1699..18661691480840.8410513-CDS-H-paniculata_contig17750:1699..1866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17750 1700..1866 -
1622929387.4091733-CDS-H-paniculata_contig17750:2237..24081622929387.4091733-CDS-H-paniculata_contig17750:2237..2408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17750 2238..2408 -
1691480840.8499565-CDS-H-paniculata_contig17750:2237..24081691480840.8499565-CDS-H-paniculata_contig17750:2237..2408Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17750 2238..2408 -
1622929387.4228284-CDS-H-paniculata_contig17750:3155..33311622929387.4228284-CDS-H-paniculata_contig17750:3155..3331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17750 3156..3331 -
1691480840.858935-CDS-H-paniculata_contig17750:3155..33311691480840.858935-CDS-H-paniculata_contig17750:3155..3331Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17750 3156..3331 -
1622929387.4331887-CDS-H-paniculata_contig17750:3857..39291622929387.4331887-CDS-H-paniculata_contig17750:3857..3929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17750 3858..3929 -
1691480840.867581-CDS-H-paniculata_contig17750:3857..39291691480840.867581-CDS-H-paniculata_contig17750:3857..3929Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17750 3858..3929 -
1622929387.4463925-CDS-H-paniculata_contig17750:4233..43771622929387.4463925-CDS-H-paniculata_contig17750:4233..4377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17750 4234..4377 -
1691480840.877397-CDS-H-paniculata_contig17750:4233..43771691480840.877397-CDS-H-paniculata_contig17750:4233..4377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17750 4234..4377 -
1622929387.4606144-CDS-H-paniculata_contig17750:4887..49631622929387.4606144-CDS-H-paniculata_contig17750:4887..4963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17750 4888..4963 -
1691480840.8879366-CDS-H-paniculata_contig17750:4887..49631691480840.8879366-CDS-H-paniculata_contig17750:4887..4963Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17750 4888..4963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17750.4240.1prot_H-paniculata_contig17750.4240.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17750 1485..4963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17750.4240.1

>prot_H-paniculata_contig17750.4240.1 ID=prot_H-paniculata_contig17750.4240.1|Name=mRNA_H-paniculata_contig17750.4240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=281bp
GALPPELGKLKKLQRFNAGHNIGISGTLPPEMCRMAQLVLLDLRHNKITG
KIPPLFGRLTNLQQLWLQNNQLTEDIPPELARLPRLQMLHLANNKLAGVI
PKALRGHPRYLSFKILAGNVALGEKVAPGSKEIEAATRRMPSTTAMSHAS
AAHVRDAQTQALRAQRQQFQESSSRSYSHSMSFSPPVEGGSNASSGRTRR
FTTAGDGTTINFAATDGATEAELKRRSSGRAGIGRRSFRGMRRIMGKKVT
PPDSPTPSTAYGEGQPPEQEGGTGGGGAGWV
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mRNA from alignment at H-paniculata_contig17750:1485..4963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17750.4240.1 ID=mRNA_H-paniculata_contig17750.4240.1|Name=mRNA_H-paniculata_contig17750.4240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3479bp|location=Sequence derived from alignment at H-paniculata_contig17750:1485..4963- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCTCTGCCACCGGAGCTCGGCAAGCTGAAGAAGCTGCAGCGGTTCAA
CGCGGGTCACAACATCGGCATTTCCGGTGAGGTCTCGTTCATGTATGCCG
GATAAAGAGGATTTGTGTGTGTGTTTTTAACAGAGTTTTTCGTGAGTAGC
TTGTATCACAAATTTGGTCAATTGAAGCACTTTGTAAACCGGTTGTTTTG
TCATTCGATTCGCTTTTTGTGTCATATAGATGGTCTGGCTATAGAATTTA
CCTCCATGTTCGTTGTGTAGTGTTTTACGTAGTGCTAATTGCTGTTCGGG
TGGTGCTCATGAAGGGTGTTCATTTGACTACGTTTTGCATGCAGCAGCGC
GTACGACTGTACTCCACTATTGTTTGTTCATCTACATATTTTGTTATTAT
TTATAAAGCCACGGTCACGTCAGCCCGTGCAGTTCGTGCTTGTCCTGGTC
CCGTAGACTTGGGGTATAAAGTAAAAACCTACTCCGAAACGACAACTACA
ATGACCTTATACACCCTTCTACGCCGTACTAATGAATATGATGTTTTTTG
TTTTGTTATTTTCCATTGTGTGGTTTTTTCCCTCAGGAACCCTGCCACCA
GAGATGTGCCGAATGGCCCAGCTGGTGCTGCTGGACCTGAGGCACAACAA
GATCACCGGAAAGATCCCACCTTTGTTTGGCCGACTCACGAATCTTCAGC
AGCTGTGGCTGCAGAACAATCAGCTTACGGGTAATGGGAAGTCAGGATAC
TTTAGTAGTTCTGGTCTCACTGTTTTTGTGTCTCGATGTAGATAGATAGA
CTCAAGCCTTAAGCCCTCATCACGGACCATCGCTTCTTTTGAGGGTCGTT
TAGAATCATGATGTTGGGGGAAAAAAAAAAAAAAGTGTCATAGTGATGCT
CCCCATATGAATGCCAGTAGTACTTGTACGCGCTAATTTTGACGAGCACT
ATTTTGCCGTGTTTTTTTTTTTTTTCAACTTTGGAGTGATTTTTTTTTTC
CCTTTTTTTTTTTTTTCTCCACTCTCTTTTCCAGAGGACATTCCCCCGGA
GCTGGCTCGCCTTCCCAGGCTGCAAATGCTTCACCTAGCCAACAACAAGC
TTGCCGGTATGTGTTGTCGATATCATTACGAAAATGTATTCCGGAGTTAC
CACTCATGAAAATGTTGGATTGAAGAGGTGTACAGGAGTATTTACTTCGC
CGATGAGGTCGAGGGTACCAACAGAATGGTAGACATGTCCATGTTTAAAA
TGTGGAATATCCACCAAACTACATGCTGCATCAAAATGACCAAACGTGAA
ACACTGGCTGTACGTACGGTTGAAACAGAAGTTTAGGATTGACCGAAACA
AATCTAGGGCCTCTAAAATAAACCTGAGTCGTACAGTAGTAGCAGCATGA
AGTGTTCCCCATTTCACCACTTTTGTAGTCGATGAATATACGTCTGTCTG
CCTACTACCCTGTTCATCCTTAACCAGGAGGTATATTATAAACTTGACTA
TATACTACTGACTATGGCGGTAGGTTAAGCCACGGGTACCCTACCCTGCG
TAGCCGCTCTTCGTTGATCCATGCAGGTAGACGTATGTATTGTCACCCTT
TTCTTCGTGTGCCCCTATATTGACCTCTGCAGGGGTCATCCCTAAGGCTC
TGCGCGGCCACCCCCGGTACTTGTCGTTCAAAATTCTGGCGGGAAACGTG
GCTTTGGGCGAGAAGGTTGCCCCCGGCAGCAAGGAGATCGAGGCAGCCAC
GCGTAGGATGCCGTCCACCACCGCTATGTCCCACGCGTCGGCGGCACATG
TGCGTGATGTTCTTACCGGTGGAATTTGTTTTTCCGTGCTCCGCGAAATC
ATCCAAACTATATGTACTTTGTACTCTCAGTTATTTCAATACTGGTACAT
GCAGTAATCAACGAACAGAGTCATCGTACGGTAGGAGAGGGGGGGGGGGG
GGTATATTGTTTAACGAAGGCCGCTTCGCAAAAGCGGCGCAATAATAACG
CAAATCTAAGCTATGTCAATTGCATGTATTTGTGCATCCCTAAAGGTGCA
CAGTCCACGAGTTGAAATGGGATTTCTATTTAAAGGGGGGGGGGGGGGCA
ACAAATGCAAAAATAAAAACATTAATAAGAAACTGCCCGATTCCCTTCTC
CACAGCAGCTCCTTCGTTAAACGAAGCGACTCAAATCCCCCCGCCCTTCC
CCCCCTACCGTAGGATGACTCAACAAGCCAAGTTAGGGGGCAATTTGCCT
CGAGATGGAAGTGCGATATCAGGATCGAGTGACTACGAGTCTGTGCATTC
CTTACCCTTAGTTCTGCCCCCAGACCATGCCAGTGGTGTGTCTTCTGGGG
GGAGCGTGATACTGACGCCATGATGTCGTTTCGAAAAGAGAGAAGGATGA
TGATGATGATGATGATGCACTGAACGTGCGCTGGATTGCCTCCGACTGAT
AAGTTTTTGTTCGTTGCGCCCGCGTCCGTATTGTAACGTGCAACATTGTT
GCTCCATTTCAATCGTTTCATACTGAATCGTATCGGATTGGATCGGACAT
ACAAGGCACAAACGCAGGCACTGAGGGCGCAGCGGCAACAGTTCCAAGAA
TCTTCTTCTAGGTCGTACTCGCATTCCATGTCATTCTCCCCGCCTGTAGA
GGGTGGCTCAAACGCTAGCAGCGGCAGGACGCGAAGGTTCACCACGGCGG
GCGATGGGACGACTATAAACTTTGCAGTGAGAATGATGAGCCTCGAGACC
AAAACAAAGTGAACTTGGTGACGACCTCATGAGTAGTTGTACACAGGTCC
CTTGCGTAACTGGTTTGAGGGATAGATACGTGGGTTTGGAGAGTCAATTT
GGCGACGACGATCAAGCACGCGTCCAGAAGATGCTCGTGCCTGTTGAGTT
GTTTCACTTGTTGTATTATTGTTCTTTTTTCGTCTTCCGCTTTCTCTCGT
GAAGTTACGACGCAAAATATTTTCGCTCTATATTCATTATTCTGCGTTTT
CATGAAGATATTCTCTTCTGGTCAAGCCCCGTCTCTCCTCTCCTCTCACT
TCATCTTCCCTCCCTCCCTTCCTTTCTGGCCTTGCTTTCAACCGAAGGCA
ACTGACGGAGCGACAGAGGCAGAGCTGAAGCGCCGCAGCAGCGGCCGCGC
TGGCATCGGCCGCCGATCATTCCGCGGCATGAGACGCATTATGGGCAAAA
AAGTCACCCCCCCGGACAGCCCCACCCCGTCCACCGCCTACGGCGAGGGG
CAGCCCCCGGAGCAGTCCCCGAGCCTGGCCGGCCGGGTGCTGATCCCGCA
CAGCGCCGCCTTTTCATCTCCGCCTGGCGAGAGCGAGCGGATGAGTGAGT
CTTCGACCAGCGCACCAAACTCTAGACCATCCTCGAGCACCAGGATTTCG
GCCGTGGGAAAGGCATTCCTCGAAGTGCCTCAAGTGGGTGAGGGAAGGGG
GGACAGGGGGGGGCGGTGCGGGGTGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig17750:1485..4963-

>mRNA_H-paniculata_contig17750.4240.1 ID=mRNA_H-paniculata_contig17750.4240.1|Name=mRNA_H-paniculata_contig17750.4240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1686bp|location=Sequence derived from alignment at H-paniculata_contig17750:1485..4963- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCTCTGCCACCGGAGCTCGGCAAGCTGAAGAAGCTGCAGCGGTTCAA
CGCGGGTCACAACATCGGCATTTCCGGGTGCTCTGCCACCGGAGCTCGGC
AAGCTGAAGAAGCTGCAGCGGTTCAACGCGGGTCACAACATCGGCATTTC
CGGAACCCTGCCACCAGAGATGTGCCGAATGGCCCAGCTGGTGCTGCTGG
ACCTGAGGCACAACAAGATCACCGGAAAGATCCCACCTTTGTTTGGCCGA
CTCACGAATCTTCAGCAGCTGTGGCTGCAGAACAATCAGCTTACGGGAAC
CCTGCCACCAGAGATGTGCCGAATGGCCCAGCTGGTGCTGCTGGACCTGA
GGCACAACAAGATCACCGGAAAGATCCCACCTTTGTTTGGCCGACTCACG
AATCTTCAGCAGCTGTGGCTGCAGAACAATCAGCTTACGGAGGACATTCC
CCCGGAGCTGGCTCGCCTTCCCAGGCTGCAAATGCTTCACCTAGCCAACA
ACAAGCTTGCCGAGGACATTCCCCCGGAGCTGGCTCGCCTTCCCAGGCTG
CAAATGCTTCACCTAGCCAACAACAAGCTTGCCGGGGTCATCCCTAAGGC
TCTGCGCGGCCACCCCCGGTACTTGTCGTTCAAAATTCTGGCGGGAAACG
TGGCTTTGGGCGAGAAGGTTGCCCCCGGCAGCAAGGAGATCGAGGCAGCC
ACGCGTAGGATGCCGTCCACCACCGCTATGTCCCACGCGTCGGCGGCACA
TGTGCGTGATGGGTCATCCCTAAGGCTCTGCGCGGCCACCCCCGGTACTT
GTCGTTCAAAATTCTGGCGGGAAACGTGGCTTTGGGCGAGAAGGTTGCCC
CCGGCAGCAAGGAGATCGAGGCAGCCACGCGTAGGATGCCGTCCACCACC
GCTATGTCCCACGCGTCGGCGGCACATGTGCGTGATGCACAAACGCAGGC
ACTGAGGGCGCAGCGGCAACAGTTCCAAGAATCTTCTTCTAGGTCGTACT
CGCATTCCATGTCATTCTCCCCGCCTGTAGAGGGTGGCTCAAACGCTAGC
AGCGGCAGGACGCGAAGGTTCACCACGGCGGGCGATGGGACGACTATAAA
CTTTGCAGCACAAACGCAGGCACTGAGGGCGCAGCGGCAACAGTTCCAAG
AATCTTCTTCTAGGTCGTACTCGCATTCCATGTCATTCTCCCCGCCTGTA
GAGGGTGGCTCAAACGCTAGCAGCGGCAGGACGCGAAGGTTCACCACGGC
GGGCGATGGGACGACTATAAACTTTGCAGCAACTGACGGAGCGACAGAGG
CAGAGCTGAAGCGCCGCAGCAGCGGCCGCGCTGGCATCGGCCGCCGATCA
TTCCGCGGCATGAGACGCATTATGGGCAAAAAAGTCACCCCCCCGGACAG
CCCCACCCCGTCCACCGCCTACGGCGAGGGGCAGCCCCCGGAGCAGCAAC
TGACGGAGCGACAGAGGCAGAGCTGAAGCGCCGCAGCAGCGGCCGCGCTG
GCATCGGCCGCCGATCATTCCGCGGCATGAGACGCATTATGGGCAAAAAA
GTCACCCCCCCGGACAGCCCCACCCCGTCCACCGCCTACGGCGAGGGGCA
GCCCCCGGAGCAGGAAGGGGGGACAGGGGGGGGCGGTGCGGGGTGGGTGG
GAAGGGGGGACAGGGGGGGGCGGTGCGGGGTGGGTG
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