prot_H-paniculata_contig17750.4240.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17750.4240.1
Unique Nameprot_H-paniculata_contig17750.4240.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length281
Homology
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BLAST of mRNA_H-paniculata_contig17750.4240.1 vs. uniprot
Match: D7G626_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G626_ECTSI)

HSP 1 Score: 90.1 bits (222), Expect = 1.440e-16
Identity = 69/149 (46.31%), Postives = 82/149 (55.03%), Query Frame = 0 
Query:  106 GHPRYLSFKILAGNVALGEKVAPGSKEIEAATRRMPSTTAMSHASAAHVRDAQTQALRAQRQQFQESSSRSYSHSMSFSPPVEGGSNASSGRTRRFTTAGDGTTINFAATDGATEAELKRRSSGRAGIGRRSFRGMRRIMGKKVTPPDS 254
            GHPRY +FKIL GN ALGE+VAP  KE+EAA RR PS  AM HAS AH +  Q +  RAQ              S S  P   G   +++GR        D   I  +AT   T  E KR + GR  +GR+  RGM+RIMGKK TPP S
Sbjct:  645 GHPRYRAFKILPGNFALGERVAPNEKEVEAAARRKPSRNAMEHASGAHAQS-QLKQNRAQXXXXXXXXXXXXXXSASMGP--NGSPTSTTGR--------DSIGIPRSATAEMTVEETKRSTFGRNSLGRK-LRGMKRIMGKKSTPPTS 781
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17750.4240.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G626_ECTSI1.440e-1646.31Hypothetical leucine rich repeat protein n=2 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 83..106
e-value: 4.2
score: 16.3
coord: 35..58
e-value: 300.0
score: 1.1
coord: 59..82
e-value: 11.0
score: 12.8
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 37..96
e-value: 2.5E-9
score: 36.8
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 37..59
score: 6.849
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 61..84
score: 7.427
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 85..106
score: 5.017
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1..129
e-value: 5.1E-31
score: 109.5
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 1..81
NoneNo IPR availablePANTHERPTHR46662FAMILY NOT NAMEDcoord: 21..108
NoneNo IPR availablePANTHERPTHR46662:SF12RECEPTOR-LIKE PROTEIN 4coord: 21..108
NoneNo IPR availablePANTHERPTHR46662:SF12RECEPTOR-LIKE PROTEIN 4coord: 1..81
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 2..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17750contigH-paniculata_contig17750:1485..4963 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17750.4240.1mRNA_H-paniculata_contig17750.4240.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17750 1485..4963 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17750.4240.1 ID=prot_H-paniculata_contig17750.4240.1|Name=mRNA_H-paniculata_contig17750.4240.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=281bp
GALPPELGKLKKLQRFNAGHNIGISGTLPPEMCRMAQLVLLDLRHNKITG
KIPPLFGRLTNLQQLWLQNNQLTEDIPPELARLPRLQMLHLANNKLAGVI
PKALRGHPRYLSFKILAGNVALGEKVAPGSKEIEAATRRMPSTTAMSHAS
AAHVRDAQTQALRAQRQQFQESSSRSYSHSMSFSPPVEGGSNASSGRTRR
FTTAGDGTTINFAATDGATEAELKRRSSGRAGIGRRSFRGMRRIMGKKVT
PPDSPTPSTAYGEGQPPEQEGGTGGGGAGWV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR001611Leu-rich_rpt
IPR032675LRR_dom_sf