mRNA_H-paniculata_contig1770.4222.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1770.4222.1
Unique NamemRNA_H-paniculata_contig1770.4222.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1770.4222.1 vs. uniprot
Match: A0A6H5JDT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT1_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.630e-19
Identity = 50/88 (56.82%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:   40 VISPLSPGNR-RRHRPAWVFDTSAASSRREAQAFDVLEQARQVEMFIVRGQRKYEILAPRWRGMTGKRLLKLEYGERLGRAKRGRSRQ 300
              S  +PG R R+  P WVFDTS A S+ EA+A  VLE+ARQVE FI+ G  K +ILAPRWR MTGKRLL+LE+G+R+G A + + R+
Sbjct:  434 AASAGTPGVRARKPCPRWVFDTSTAISKSEAKAHGVLEEARQVEAFIINGGEKQKILAPRWRSMTGKRLLRLEHGQRMGLAAKVKGRR 521
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1770.4222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDT1_9PHAE2.630e-1956.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1770contigH-paniculata_contig1770:1796..2983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGamma-tocopherol methyltransferase
Ec32 orthologEc-18_000910.2
Exons2
Model size387
Cds size384
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929383.517111-CDS-H-paniculata_contig1770:1795..19481622929383.517111-CDS-H-paniculata_contig1770:1795..1948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1770 1796..1948 +
1691480839.554569-CDS-H-paniculata_contig1770:1795..19481691480839.554569-CDS-H-paniculata_contig1770:1795..1948Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1770 1796..1948 +
1622929383.5350132-CDS-H-paniculata_contig1770:2750..29811622929383.5350132-CDS-H-paniculata_contig1770:2750..2981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1770 2751..2981 +
1691480839.5629396-CDS-H-paniculata_contig1770:2750..29811691480839.5629396-CDS-H-paniculata_contig1770:2750..2981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1770 2751..2981 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1770.4222.1prot_H-paniculata_contig1770.4222.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1770 1796..2981 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1770.4222.1

>prot_H-paniculata_contig1770.4222.1 ID=prot_H-paniculata_contig1770.4222.1|Name=mRNA_H-paniculata_contig1770.4222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
EVSGGGDNESGVSVISPLSPGNRRRHRPAWVFDTSAASSRREAQAFDVLE
QARQVEMFIVRGQRKYEILAPRWRGMTGKRLLKLEYGERLGRAKRGRSRQ
GSPGGADKLEGTGRSTGARVETREAPLS
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mRNA from alignment at H-paniculata_contig1770:1796..2983+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1770.4222.1 ID=mRNA_H-paniculata_contig1770.4222.1|Name=mRNA_H-paniculata_contig1770.4222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1188bp|location=Sequence derived from alignment at H-paniculata_contig1770:1796..2983+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTCAGTGGCGGTGGTGATAACGAATCAGGGGTCTCGGTAATATCGCC
CTTGTCTCCAGGCAACAGGCGCCGTCATAGACCCGCCTGGGTGTTCGACA
CGAGTGCAGCTAGTTCCAGAAGGGAAGCGCAAGCCTTTGATGTGCTGGAA
CAGGTGGGTGCTATACTGTGGCACCCGCCGGCGGGTTCGGACACGTTTGC
AATTTTCTCTTCGGAATCTGCAACACGCCTCCTATATCGTAAACCCTTGC
AGCGCTGAGAATGGGTTCGATAGTTATTTTCTAACACACTACAGTGTACT
TGAGCGCTTGCTATTTTCGTATTGTGTTGCAGTTGCACGAGATTGTTTCG
AGCGCACATTCTATTCCTGACCCCAAGCGAGTCGCTCTACGGCGCGGGTC
GGGTACTTTCAGGAATCGCTCTCCTGCGAGCAACTAAACACCCCAAAAAC
CTTGAACCGCCGTGTTTCCTCCTCTGTCGTCTTCTGTTTCGCATTCCGAT
TTGAACCGCTGCCAGCCCTCAAGATAGGATGGATACCCAGTGGCCAAAAG
TCCCTTGCCCTAACCTGTACCCCTTTAGTACATGAAGATATCTAACGGCA
GCAAGAAAGTACCTTCGTAGGCATTAGTTTCAAGATTATTAATGCCGCTT
CGCAGAGATCAAAGAATTGATAAAGGTGCATACATTCAGCATGTCATATT
ATGAGCGAGATATATCCATTTTTTCACCATAGAGGAAGGGTCAACCGCAG
AGCTAAAGCTCTACGGCAGTGACTGTACCAAAACGGACGTTTGCTTATCA
TTTGGAACACACACACACACACACACACACACACACACACACAAACATGC
GCAATCTCGCAAGAACAAGCACAGCTTCAGTAGTAGTGGTCGAGGAGAAA
GCTTTTGCAACACTCTCGTGCTATCAATTAACCGCGCTAATCGTTCAAAC
CTTAGGCTCGACAAGTGGAAATGTTCATCGTCAGAGGGCAACGAAAATAT
GAGATACTCGCGCCTCGATGGCGTGGCATGACGGGCAAACGCCTGCTGAA
GTTGGAGTACGGGGAGCGACTAGGCAGAGCGAAGCGGGGTCGCAGCCGCC
AAGGATCGCCTGGCGGAGCTGACAAACTAGAAGGCACGGGTAGGTCCACG
GGAGCGCGTGTCGAGACGAGAGAAGCCCCCCTCAGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1770:1796..2983+

>mRNA_H-paniculata_contig1770.4222.1 ID=mRNA_H-paniculata_contig1770.4222.1|Name=mRNA_H-paniculata_contig1770.4222.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig1770:1796..2983+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGTCAGTGGCGGTGGTGATAACGAATCAGGGGTCTCGGTAATATCGCC
CTTGTCTCCAGGCAACAGGCGCCGTCATAGACCCGCCTGGGTGTTCGACA
CGAGTGCAGCTAGTTCCAGAAGGGAAGCGCAAGCCTTTGATGTGCTGGAA
CAGGAAGTCAGTGGCGGTGGTGATAACGAATCAGGGGTCTCGGTAATATC
GCCCTTGTCTCCAGGCAACAGGCGCCGTCATAGACCCGCCTGGGTGTTCG
ACACGAGTGCAGCTAGTTCCAGAAGGGAAGCGCAAGCCTTTGATGTGCTG
GAACAGGCTCGACAAGTGGAAATGTTCATCGTCAGAGGGCAACGAAAATA
TGAGATACTCGCGCCTCGATGGCGTGGCATGACGGGCAAACGCCTGCTGA
AGTTGGAGTACGGGGAGCGACTAGGCAGAGCGAAGCGGGGTCGCAGCCGC
CAAGGATCGCCTGGCGGAGCTGACAAACTAGAAGGCACGGGTAGGTCCAC
GGGAGCGCGTGTCGAGACGAGAGAAGCCCCCCTCAGTGCTCGACAAGTGG
AAATGTTCATCGTCAGAGGGCAACGAAAATATGAGATACTCGCGCCTCGA
TGGCGTGGCATGACGGGCAAACGCCTGCTGAAGTTGGAGTACGGGGAGCG
ACTAGGCAGAGCGAAGCGGGGTCGCAGCCGCCAAGGATCGCCTGGCGGAG
CTGACAAACTAGAAGGCACGGGTAGGTCCACGGGAGCGCGTGTCGAGACG
AGAGAAGCCCCCCTCAGT
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