mRNA_H-paniculata_contig17688.4214.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17688.4214.1
Unique NamemRNA_H-paniculata_contig17688.4214.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.860e-20
Identity = 54/132 (40.91%), Postives = 79/132 (59.85%), Query Frame = 1
Query:  259 VMDMHRLLAHASQQITRDTVETAGVVLTGEWGACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLK--IDAIRMDNG 648
            V D H +  HA + + R T +  G+ LTG+  AC GCS GKA R A+   T   +     R++V+LGG  GVAS+GG  Y MIL DD++R   + F++ +SDA +A +S++A  V   G+   I+ +R DNG
Sbjct:  393 VNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLAN-VRADGIPSLIEIVRSDNG 523          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A1Y1LP39_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LP39_PHOPY)

HSP 1 Score: 87.0 bits (214), Expect = 4.460e-16
Identity = 51/134 (38.06%), Postives = 69/134 (51.49%), Query Frame = 1
Query:  259 VMDMHRLLAHAS-QQITRDTVETAGVVLTGEWGACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVY 657
            +M  HR LAH S   + R      G+  +G   AC  C  GK HR    +K   RAT   E L+ DL GPM V S+GG+ YV+ L+DDY+R+  V F+K +++    L  +        G +I AIR D G  Y
Sbjct:   90 IMLWHRRLAHLSCGGLDRLRNMVQGLEYSGTMEACVSCIKGKQHRLPFPQKKVHRATEVLELLHSDLCGPMNVPSIGGARYVLTLIDDYTRMTFVSFLKTKNEVFTKLSEFRTYIENQTGKRIKAIRSDRGGEY 223          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A0J7K9E1_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K9E1_LASNI)

HSP 1 Score: 81.6 bits (200), Expect = 3.290e-14
Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:  358 CKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVY 657
            C GC  GK+ +    +   +++    E ++ DL GPM V S+GGS Y+M L+DDYSR   V F+K + +A   ++++I++    KGLKI   R DNG  Y
Sbjct:  226 CHGCCIGKSTKVPCKRINGRQSRGILELIHSDLCGPMSVKSIGGSRYIMTLIDDYSRKTMVYFLKSKDEAVHNIKNFISKVERDKGLKIKRFRSDNGLEY 325          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A6H5KVT7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT7_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 4.160e-14
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:  310 DTVETAGVVLTGEWGACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLK--IDAIRMDNG 648
            D     G+ LTG+  A  GCS GK  R A+   T   +     R++VDLGG  GVAS+GG  Y MIL DD++R   + F++ +SDA +  +S++A  V   G+   I+ +R DNG
Sbjct:  238 DWYADTGIELTGKMHAYSGCSMGKGIRKAIAHVTTNGSDKKLGRVFVDLGGKKGVASIGGKHYPMILKDDFTRRARMYFLRSKSDAGSVFRSFLAN-VRADGIPSLIEIVRSDNG 351          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER)

HSP 1 Score: 77.0 bits (188), Expect = 1.340e-12
Identity = 44/140 (31.43%), Postives = 71/140 (50.71%), Query Frame = 1
Query:  271 HRLLAHASQQ----ITRDTVETAGVVLTGEWGACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVYSARKRSH 678
            HR + H +++    ++R   +     L  E   C  C TGK  R       +++++   + ++VDL GP+ V SLGGS Y++ +VDD+SR   V F+K + +A   L  YI +     G K+  +R DNG  +  R   H
Sbjct:  428 HRRMGHLNRETLVRMSRTEADRGMPKLKQEDFECVPCITGKHSRNPFNPSQERQSSSLLDLVHVDLCGPLPVCSLGGSRYILAVVDDHSRRITVRFLKSKDEAAEILTEYINQVERQTGSKVKRVRTDNGTEFVNRGLQH 567          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A5E4G7P4_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G7P4_PRUDU)

HSP 1 Score: 76.6 bits (187), Expect = 1.720e-12
Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  352 GACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVYSA 663
            G C+GC  GK HR    +   +RAT   E ++VDL GPM   S+ G+ Y M+L+DD+SR+  V F++ +SDA    + + A      G KI  +R D G  + +
Sbjct:  520 GVCEGCQFGKQHREEFPRNQAQRATAPLELVHVDLCGPMRNDSIAGNKYFMLLIDDFSRMIWVYFLRYKSDAFNCFRKFKAMTELQSGFKIKCLRSDRGGEFKS 623          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A5H2Y546_PRUDU (Uncharacterized protein n=4 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2Y546_PRUDU)

HSP 1 Score: 76.6 bits (187), Expect = 1.840e-12
Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  352 GACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVYSA 663
            G C+GC  GK HR    +   +RAT   E ++VDL GPM   S+ G+ Y M+L+DD+SR+  V F++ +SDA    + + A      G KI  +R D G  + +
Sbjct:  520 GVCEGCQFGKQHREEFPRNQAQRATAPLELVHVDLCGPMRNDSIAGNKYFMLLIDDFSRMIWVYFLRYKSDAFNCFRKFKAMTELQSGFKIKCLRSDRGGEFKS 623          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A6H5KU45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU45_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.180e-11
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  286 HASQQITRDTVETAGVVLTG-EWGACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEY 600
            HA +++ RDT +  GV LTG     C  CS  K     V   T  RA     R+++DLGG M +AS+GGS + + +V D++R   V F+K++SDA    + ++A+Y
Sbjct: 1262 HAHEKLLRDTAKQQGVQLTGGPLLPCLSCSISKGQVKPVGTSTSTRAVKKLVRIFLDLGGKMKIASIGGSLFTLKIVCDHTRWTRVFFLKRKSDAAEKFKHFLADY 1367          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A836F4N7_9HYME (POLX protein (Fragment) n=1 Tax=Pseudoatta argentina TaxID=621737 RepID=A0A836F4N7_9HYME)

HSP 1 Score: 73.9 bits (180), Expect = 1.340e-11
Identity = 42/144 (29.17%), Postives = 72/144 (50.00%), Query Frame = 1
Query:  229 KAENEANTLAVMDMHRLLAHASQQITRDTVETAGVVLTGEW----GACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNG 648
            K E  A T  +   H+   H +++I  +  +   V+   E       C+ C  GK  R A  + T ++     E  ++DL GP+  +S GG  Y+  ++DDYSR+  ++F+K++ +A+  L+  I       G+K+  IR DNG
Sbjct:  278 KNEQAARTSEIDIWHKRFGHTNKKINEEMKKEDLVIGLKETDKMISQCESCVEGKMCRKAHPRLTHRKTKKIMELWHIDLVGPINPSSYGGKRYIFTIIDDYSRVIFIDFLKEKKEASEKLKKLILLKENQTGMKLKGIRSDNG 421          
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A4Y1RL02_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RL02_PRUDU)

HSP 1 Score: 73.6 bits (179), Expect = 1.810e-11
Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  352 GACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVYSA 663
            G C GC  GK HR    K    RA+   E ++VDL GPM   S+ G+ YVM+L+DD +R+  V F++ +SDA    + + +      GLK+  +R D G  +++
Sbjct:   93 GVCDGCQFGKQHREWFPKNQAWRASNPLELVHVDLCGPMQNESIAGNKYVMLLIDDCTRMVWVYFLRYKSDALNCFRKFKSMVELQSGLKVKCLRSDKGGEFTS 196          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JH25_9PHAE2.860e-2040.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1LP39_PHOPY4.460e-1638.06Integrase catalytic domain-containing protein (Fra... [more]
A0A0J7K9E1_LASNI3.290e-1439.00Retrovirus-related pol polyprotein from transposon... [more]
A0A6H5KVT7_9PHAE4.160e-1440.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A293MM55_ORNER1.340e-1231.43Reverse transcriptase, gag, polyprotein (Fragment)... [more]
A0A5E4G7P4_PRUDU1.720e-1237.50PREDICTED: Retrovirus-related Pol poly from transp... [more]
A0A5H2Y546_PRUDU1.840e-1237.50Uncharacterized protein n=4 Tax=Prunus dulcis TaxI... [more]
A0A6H5KU45_9PHAE1.180e-1137.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836F4N7_9HYME1.340e-1129.17POLX protein (Fragment) n=1 Tax=Pseudoatta argenti... [more]
A0A4Y1RL02_PRUDU1.810e-1136.54Transposable element protein n=1 Tax=Prunus dulcis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17688contigH-paniculata_contig17688:1005..1690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.9
Seed ortholog evalue8.3e-11
Seed eggNOG ortholog102107.XP_008237766.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.NB-ARC domain
EggNOG OGs3894G@33090,3GY0K@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size686
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17688.4214.1prot_H-paniculata_contig17688.4214.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17688 1149..1685 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929382.2734654-UTR-H-paniculata_contig17688:1004..11481622929382.2734654-UTR-H-paniculata_contig17688:1004..1148Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17688 1005..1148 +
1691480839.1100667-UTR-H-paniculata_contig17688:1004..11481691480839.1100667-UTR-H-paniculata_contig17688:1004..1148Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17688 1005..1148 +
1622929382.3341675-UTR-H-paniculata_contig17688:1685..16901622929382.3341675-UTR-H-paniculata_contig17688:1685..1690Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17688 1686..1690 +
1691480839.1339335-UTR-H-paniculata_contig17688:1685..16901691480839.1339335-UTR-H-paniculata_contig17688:1685..1690Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17688 1686..1690 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929382.300378-CDS-H-paniculata_contig17688:1148..16851622929382.300378-CDS-H-paniculata_contig17688:1148..1685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17688 1149..1685 +
1691480839.12541-CDS-H-paniculata_contig17688:1148..16851691480839.12541-CDS-H-paniculata_contig17688:1148..1685Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17688 1149..1685 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17688.4214.1

>prot_H-paniculata_contig17688.4214.1 ID=prot_H-paniculata_contig17688.4214.1|Name=mRNA_H-paniculata_contig17688.4214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp
MIESSDDSPNRARIETIIANQYNRLQQQKAENEANTLAVMDMHRLLAHAS
QQITRDTVETAGVVLTGEWGACKGCSTGKAHRFAVLKKTDKRATWAAERL
YVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIA
EYVTPKGLKIDAIRMDNGWVYSARKRSH*
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mRNA from alignment at H-paniculata_contig17688:1005..1690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17688.4214.1 ID=mRNA_H-paniculata_contig17688.4214.1|Name=mRNA_H-paniculata_contig17688.4214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=686bp|location=Sequence derived from alignment at H-paniculata_contig17688:1005..1690+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCCGGGGAAGAATCCACATAATTCCGTTTGCGGGTGGACCGGGTCGCCA ATGACTTGGAGCGGCTTGGGAGAACCGTCGACGAAGATGACAGGAATCTG GCGGTAGTGAACGGGCTATCACCAGAGTATGACATTGAGAGGAGATGATC GAGAGCAGCGATGACTCGCCAAATAGAGCGCGCATCGAAACGATCATCGC AAACCAGTATAACAGGCTTCAGCAGCAGAAAGCCGAGAACGAAGCAAACA CACTGGCCGTCATGGACATGCACCGACTGCTTGCGCATGCGAGCCAGCAG ATCACAAGGGATACGGTGGAAACGGCCGGCGTCGTACTGACGGGTGAATG GGGGGCCTGCAAAGGATGCTCTACTGGGAAGGCTCACCGATTCGCCGTGC TGAAAAAGACCGACAAGCGAGCCACATGGGCTGCGGAGCGCCTATACGTC GACCTGGGCGGACCCATGGGAGTAGCCAGCTTGGGCGGTAGTTCGTATGT GATGATCCTCGTCGACGACTACTCGCGGCTCCAGGCTGTCGAGTTCATCA AGAAGGAGAGCGACGCCACTGCAGCTCTCCAGAGCTACATCGCCGAATAC GTCACGCCGAAGGGACTCAAGATCGACGCCATTCGCATGGACAACGGCTG GGTCTACTCCGCGAGAAAACGATCGCATTGATGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig17688:1005..1690+

>mRNA_H-paniculata_contig17688.4214.1 ID=mRNA_H-paniculata_contig17688.4214.1|Name=mRNA_H-paniculata_contig17688.4214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig17688:1005..1690+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCGAGAGCAGCGATGACTCGCCAAATAGAGCGCGCATCGAAACGAT
CATCGCAAACCAGTATAACAGGCTTCAGCAGCAGAAAGCCGAGAACGAAG
CAAACACACTGGCCGTCATGGACATGCACCGACTGCTTGCGCATGCGAGC
CAGCAGATCACAAGGGATACGGTGGAAACGGCCGGCGTCGTACTGACGGG
TGAATGGGGGGCCTGCAAAGGATGCTCTACTGGGAAGGCTCACCGATTCG
CCGTGCTGAAAAAGACCGACAAGCGAGCCACATGGGCTGCGGAGCGCCTA
TACGTCGACCTGGGCGGACCCATGGGAGTAGCCAGCTTGGGCGGTAGTTC
GTATGTGATGATCCTCGTCGACGACTACTCGCGGCTCCAGGCTGTCGAGT
TCATCAAGAAGGAGAGCGACGCCACTGCAGCTCTCCAGAGCTACATCGCC
GAATACGTCACGCCGAAGGGACTCAAGATCGACGCCATTCGCATGGACAA
CGGCTGGGTCTACTCCGCGAGAAAACGATCGCATTGAATGATCGAGAGCA
GCGATGACTCGCCAAATAGAGCGCGCATCGAAACGATCATCGCAAACCAG
TATAACAGGCTTCAGCAGCAGAAAGCCGAGAACGAAGCAAACACACTGGC
CGTCATGGACATGCACCGACTGCTTGCGCATGCGAGCCAGCAGATCACAA
GGGATACGGTGGAAACGGCCGGCGTCGTACTGACGGGTGAATGGGGGGCC
TGCAAAGGATGCTCTACTGGGAAGGCTCACCGATTCGCCGTGCTGAAAAA
GACCGACAAGCGAGCCACATGGGCTGCGGAGCGCCTATACGTCGACCTGG
GCGGACCCATGGGAGTAGCCAGCTTGGGCGGTAGTTCGTATGTGATGATC
CTCGTCGACGACTACTCGCGGCTCCAGGCTGTCGAGTTCATCAAGAAGGA
GAGCGACGCCACTGCAGCTCTCCAGAGCTACATCGCCGAATACGTCACGC
CGAAGGGACTCAAGATCGACGCCATTCGCATGGACAACGGCTGGGTCTAC
TCCGCGAGAAAACGATCGCATTGA
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