mRNA_H-paniculata_contig17688.4214.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A6H5JH25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH25_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 2.860e-20 Identity = 54/132 (40.91%), Postives = 79/132 (59.85%), Query Frame = 1
Query: 259 VMDMHRLLAHASQQITRDTVETAGVVLTGEWGACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLK--IDAIRMDNG 648
V D H + HA + + R T + G+ LTG+ AC GCS GKA R A+ T + R++V+LGG GVAS+GG Y MIL DD++R + F++ +SDA +A +S++A V G+ I+ +R DNG
Sbjct: 393 VNDFHNIYGHAHEGMLRTTAKRLGIELTGKMHACSGCSMGKAIRKAIAHVTTNSSDKKLGRVFVNLGGKKGVASIGGKHYPMILKDDFTRRAWMYFLRSKSDAGSAFRSFLAN-VRADGIPSLIEIVRSDNG 523
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A1Y1LP39_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LP39_PHOPY) HSP 1 Score: 87.0 bits (214), Expect = 4.460e-16 Identity = 51/134 (38.06%), Postives = 69/134 (51.49%), Query Frame = 1
Query: 259 VMDMHRLLAHAS-QQITRDTVETAGVVLTGEWGACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVY 657
+M HR LAH S + R G+ +G AC C GK HR +K RAT E L+ DL GPM V S+GG+ YV+ L+DDY+R+ V F+K +++ L + G +I AIR D G Y
Sbjct: 90 IMLWHRRLAHLSCGGLDRLRNMVQGLEYSGTMEACVSCIKGKQHRLPFPQKKVHRATEVLELLHSDLCGPMNVPSIGGARYVLTLIDDYTRMTFVSFLKTKNEVFTKLSEFRTYIENQTGKRIKAIRSDRGGEY 223
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A0J7K9E1_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K9E1_LASNI) HSP 1 Score: 81.6 bits (200), Expect = 3.290e-14 Identity = 39/100 (39.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query: 358 CKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVY 657
C GC GK+ + + +++ E ++ DL GPM V S+GGS Y+M L+DDYSR V F+K + +A ++++I++ KGLKI R DNG Y
Sbjct: 226 CHGCCIGKSTKVPCKRINGRQSRGILELIHSDLCGPMSVKSIGGSRYIMTLIDDYSRKTMVYFLKSKDEAVHNIKNFISKVERDKGLKIKRFRSDNGLEY 325
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A6H5KVT7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVT7_9PHAE) HSP 1 Score: 80.9 bits (198), Expect = 4.160e-14 Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 310 DTVETAGVVLTGEWGACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLK--IDAIRMDNG 648
D G+ LTG+ A GCS GK R A+ T + R++VDLGG GVAS+GG Y MIL DD++R + F++ +SDA + +S++A V G+ I+ +R DNG
Sbjct: 238 DWYADTGIELTGKMHAYSGCSMGKGIRKAIAHVTTNGSDKKLGRVFVDLGGKKGVASIGGKHYPMILKDDFTRRARMYFLRSKSDAGSVFRSFLAN-VRADGIPSLIEIVRSDNG 351
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A293MM55_ORNER (Reverse transcriptase, gag, polyprotein (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MM55_ORNER) HSP 1 Score: 77.0 bits (188), Expect = 1.340e-12 Identity = 44/140 (31.43%), Postives = 71/140 (50.71%), Query Frame = 1
Query: 271 HRLLAHASQQ----ITRDTVETAGVVLTGEWGACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVYSARKRSH 678
HR + H +++ ++R + L E C C TGK R +++++ + ++VDL GP+ V SLGGS Y++ +VDD+SR V F+K + +A L YI + G K+ +R DNG + R H
Sbjct: 428 HRRMGHLNRETLVRMSRTEADRGMPKLKQEDFECVPCITGKHSRNPFNPSQERQSSSLLDLVHVDLCGPLPVCSLGGSRYILAVVDDHSRRITVRFLKSKDEAAEILTEYINQVERQTGSKVKRVRTDNGTEFVNRGLQH 567
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A5E4G7P4_PRUDU (PREDICTED: Retrovirus-related Pol poly from transposon n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A5E4G7P4_PRUDU) HSP 1 Score: 76.6 bits (187), Expect = 1.720e-12 Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = 1
Query: 352 GACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVYSA 663
G C+GC GK HR + +RAT E ++VDL GPM S+ G+ Y M+L+DD+SR+ V F++ +SDA + + A G KI +R D G + +
Sbjct: 520 GVCEGCQFGKQHREEFPRNQAQRATAPLELVHVDLCGPMRNDSIAGNKYFMLLIDDFSRMIWVYFLRYKSDAFNCFRKFKAMTELQSGFKIKCLRSDRGGEFKS 623
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A5H2Y546_PRUDU (Uncharacterized protein n=4 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2Y546_PRUDU) HSP 1 Score: 76.6 bits (187), Expect = 1.840e-12 Identity = 39/104 (37.50%), Postives = 58/104 (55.77%), Query Frame = 1
Query: 352 GACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVYSA 663
G C+GC GK HR + +RAT E ++VDL GPM S+ G+ Y M+L+DD+SR+ V F++ +SDA + + A G KI +R D G + +
Sbjct: 520 GVCEGCQFGKQHREEFPRNQAQRATAPLELVHVDLCGPMRNDSIAGNKYFMLLIDDFSRMIWVYFLRYKSDAFNCFRKFKAMTELQSGFKIKCLRSDRGGEFKS 623
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A6H5KU45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU45_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 1.180e-11 Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 1
Query: 286 HASQQITRDTVETAGVVLTG-EWGACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEY 600
HA +++ RDT + GV LTG C CS K V T RA R+++DLGG M +AS+GGS + + +V D++R V F+K++SDA + ++A+Y
Sbjct: 1262 HAHEKLLRDTAKQQGVQLTGGPLLPCLSCSISKGQVKPVGTSTSTRAVKKLVRIFLDLGGKMKIASIGGSLFTLKIVCDHTRWTRVFFLKRKSDAAEKFKHFLADY 1367
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A836F4N7_9HYME (POLX protein (Fragment) n=1 Tax=Pseudoatta argentina TaxID=621737 RepID=A0A836F4N7_9HYME) HSP 1 Score: 73.9 bits (180), Expect = 1.340e-11 Identity = 42/144 (29.17%), Postives = 72/144 (50.00%), Query Frame = 1
Query: 229 KAENEANTLAVMDMHRLLAHASQQITRDTVETAGVVLTGEW----GACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNG 648
K E A T + H+ H +++I + + V+ E C+ C GK R A + T ++ E ++DL GP+ +S GG Y+ ++DDYSR+ ++F+K++ +A+ L+ I G+K+ IR DNG
Sbjct: 278 KNEQAARTSEIDIWHKRFGHTNKKINEEMKKEDLVIGLKETDKMISQCESCVEGKMCRKAHPRLTHRKTKKIMELWHIDLVGPINPSSYGGKRYIFTIIDDYSRVIFIDFLKEKKEASEKLKKLILLKENQTGMKLKGIRSDNG 421
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Match: A0A4Y1RL02_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RL02_PRUDU) HSP 1 Score: 73.6 bits (179), Expect = 1.810e-11 Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 1
Query: 352 GACKGCSTGKAHRFAVLKKTDKRATWAAERLYVDLGGPMGVASLGGSSYVMILVDDYSRLQAVEFIKKESDATAALQSYIAEYVTPKGLKIDAIRMDNGWVYSA 663
G C GC GK HR K RA+ E ++VDL GPM S+ G+ YVM+L+DD +R+ V F++ +SDA + + + GLK+ +R D G +++
Sbjct: 93 GVCDGCQFGKQHREWFPKNQAWRASNPLELVHVDLCGPMQNESIAGNKYVMLLIDDCTRMVWVYFLRYKSDALNCFRKFKSMVELQSGLKVKCLRSDKGGEFTS 196 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17688.4214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17688.4214.1 >prot_H-paniculata_contig17688.4214.1 ID=prot_H-paniculata_contig17688.4214.1|Name=mRNA_H-paniculata_contig17688.4214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=179bp MIESSDDSPNRARIETIIANQYNRLQQQKAENEANTLAVMDMHRLLAHASback to top mRNA from alignment at H-paniculata_contig17688:1005..1690+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17688.4214.1 ID=mRNA_H-paniculata_contig17688.4214.1|Name=mRNA_H-paniculata_contig17688.4214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=686bp|location=Sequence derived from alignment at H-paniculata_contig17688:1005..1690+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17688:1005..1690+ >mRNA_H-paniculata_contig17688.4214.1 ID=mRNA_H-paniculata_contig17688.4214.1|Name=mRNA_H-paniculata_contig17688.4214.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1074bp|location=Sequence derived from alignment at H-paniculata_contig17688:1005..1690+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |