prot_H-paniculata_contig17631.4195.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig17631.4195.1
Unique Name	prot_H-paniculata_contig17631.4195.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	183

Homology

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BLAST of mRNA_H-paniculata_contig17631.4195.1 vs. uniprot
Match: D7FP77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP77_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 1.250e-67
Identity = 105/175 (60.00%), Postives = 137/175 (78.29%), Query Frame = 0

Query:    9 SSLSSAHAISISKMTTNGNRGVVASVVWLLIATGLCFPWLVEREDGSKDQTLEKSISWFVMLAFDLGVSTVCVFSLWLRRSAMSMMLLIWGSFCIIGTFLLGSFAMIPAVATMCCCAPELCKLGAADITALNNDFCYIPLDMCMTTPWSFWCFYGGILLAMVSMVLLVNSVAFHH 183
            SS +S+   S S++ +NG  GVV+SV+W++I+ GLCFPWL+E+   SK     KS++WFV+LA DL +  + VFSLW RRS +S+MLLIWG+  I+ TFL+GSFAM+PAVAT+CCCA ELC LGAADI+ L++ FC+  L++CM T WS WC+YGGILLAM S+VLLVNSVA HH
Sbjct:   15 SSFNSSQEFSASRVLSNGTCGVVSSVIWIIISAGLCFPWLLEQPSASKAGDSPKSVAWFVVLAIDLLIGAMSVFSLWFRRSTLSIMLLIWGAGGIVVTFLMGSFAMLPAVATICCCAEELCVLGAADISPLDDSFCHTTLELCMETKWSLWCYYGGILLAMTSIVLLVNSVALHH 189

[Close]

BLAST of mRNA_H-paniculata_contig17631.4195.1 vs. uniprot
Match: A0A6H5JN85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN85_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 1.210e-63
Identity = 108/199 (54.27%), Postives = 138/199 (69.35%), Query Frame = 0

Query:    7 SNSSLSSAHAISISKMTTNGNRGVVASVVWLLIATGLCFPWLVEREDGSKDQTLEKSISWFVMLAFDLGVSTVCVFSLWLRRSAMSMMLLIWGSFCIIGTFLLGSFAMIPAVATM----------------------CCCAPELCKLGAADITALNNDFCYIPLDMCMTTPWSFWCFYGGILLAMVSMVLLVNSVAFHH 183
            S SS +S+   S S++ +NG  GVV+SV+W++I+ GLCFPWL+E+   SK     KS++WFV+LA DL +  + VFSLW RRS +S+MLLIWG+  I+ TFL+GSFAM+PAVATM                      CCCA ELC LGAADI+ L++ FCY  L++CM T WS WC+YGGILLAM S+VLLVNSVA HH
Sbjct:   13 STSSFNSSQEFSASRVLSNGACGVVSSVIWIIISAGLCFPWLLEQPPASKAGDSPKSVAWFVVLAIDLSIGAMSVFSLWFRRSTLSIMLLIWGAGGIVATFLVGSFAMLPAVATMSTSSFTMSTSCATANPVDLGGRCCCAEELCVLGAADISPLDDSFCYTTLELCMETKWSLWCYYGGILLAMTSIVLLVNSVALHH 211

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig17631.4195.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig17631.4195.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FP77_ECTSI	1.250e-67	60.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JN85_9PHAE	1.210e-63	54.27	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 156..181
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 182..183
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..29
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 30..49
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 64..86
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 87..92
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 93..115
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 116..155
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 50..63
None	No IPR available	TMHMM	TMhelix		coord: 159..181
None	No IPR available	TMHMM	TMhelix		coord: 30..49
None	No IPR available	TMHMM	TMhelix		coord: 64..86
None	No IPR available	TMHMM	TMhelix		coord: 93..115

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig17631	contig	H-paniculata_contig17631:238..1521 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig17631.4195.1	mRNA_H-paniculata_contig17631.4195.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig17631 238..1521 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig17631.4195.1 ID=prot_H-paniculata_contig17631.4195.1|Name=mRNA_H-paniculata_contig17631.4195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
MAGLSLSNSSLSSAHAISISKMTTNGNRGVVASVVWLLIATGLCFPWLVE
REDGSKDQTLEKSISWFVMLAFDLGVSTVCVFSLWLRRSAMSMMLLIWGS
FCIIGTFLLGSFAMIPAVATMCCCAPELCKLGAADITALNNDFCYIPLDM
CMTTPWSFWCFYGGILLAMVSMVLLVNSVAFHH