mRNA_H-paniculata_contig17631.4195.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17631.4195.1
Unique NamemRNA_H-paniculata_contig17631.4195.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17631.4195.1 vs. uniprot
Match: D7FP77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP77_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 1.250e-67
Identity = 105/175 (60.00%), Postives = 137/175 (78.29%), Query Frame = 1 
Query:   25 SSLSSAHAISISKMTTNGNRGVVASVVWLLIATGLCFPWLVEREDGSKDQTLEKSISWFVMLAFDLGVSTVCVFSLWLRRSAMSMMLLIWGSFCIIGTFLLGSFAMIPAVATMCCCAPELCKLGAADITALNNDFCYIPLDMCMTTPWSFWCFYGGILLAMVSMVLLVNSVAFHH 549
            SS +S+   S S++ +NG  GVV+SV+W++I+ GLCFPWL+E+   SK     KS++WFV+LA DL +  + VFSLW RRS +S+MLLIWG+  I+ TFL+GSFAM+PAVAT+CCCA ELC LGAADI+ L++ FC+  L++CM T WS WC+YGGILLAM S+VLLVNSVA HH
Sbjct:   15 SSFNSSQEFSASRVLSNGTCGVVSSVIWIIISAGLCFPWLLEQPSASKAGDSPKSVAWFVVLAIDLLIGAMSVFSLWFRRSTLSIMLLIWGAGGIVVTFLMGSFAMLPAVATICCCAEELCVLGAADISPLDDSFCHTTLELCMETKWSLWCYYGGILLAMTSIVLLVNSVALHH 189
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BLAST of mRNA_H-paniculata_contig17631.4195.1 vs. uniprot
Match: A0A6H5JN85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN85_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 1.210e-63
Identity = 108/199 (54.27%), Postives = 138/199 (69.35%), Query Frame = 1 
Query:   19 SNSSLSSAHAISISKMTTNGNRGVVASVVWLLIATGLCFPWLVEREDGSKDQTLEKSISWFVMLAFDLGVSTVCVFSLWLRRSAMSMMLLIWGSFCIIGTFLLGSFAMIPAVATM----------------------CCCAPELCKLGAADITALNNDFCYIPLDMCMTTPWSFWCFYGGILLAMVSMVLLVNSVAFHH 549
            S SS +S+   S S++ +NG  GVV+SV+W++I+ GLCFPWL+E+   SK     KS++WFV+LA DL +  + VFSLW RRS +S+MLLIWG+  I+ TFL+GSFAM+PAVATM                      CCCA ELC LGAADI+ L++ FCY  L++CM T WS WC+YGGILLAM S+VLLVNSVA HH
Sbjct:   13 STSSFNSSQEFSASRVLSNGACGVVSSVIWIIISAGLCFPWLLEQPPASKAGDSPKSVAWFVVLAIDLSIGAMSVFSLWFRRSTLSIMLLIWGAGGIVATFLVGSFAMLPAVATMSTSSFTMSTSCATANPVDLGGRCCCAEELCVLGAADISPLDDSFCYTTLELCMETKWSLWCYYGGILLAMTSIVLLVNSVALHH 211
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17631.4195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FP77_ECTSI1.250e-6760.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JN85_9PHAE1.210e-6354.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17631contigH-paniculata_contig17631:238..1521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-08_000540.1
Exons2
Model size549
Cds size549
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929380.1637864-CDS-H-paniculata_contig17631:237..4241622929380.1637864-CDS-H-paniculata_contig17631:237..424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17631 238..424 -
1691480838.3931792-CDS-H-paniculata_contig17631:237..4241691480838.3931792-CDS-H-paniculata_contig17631:237..424Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17631 238..424 -
1622929380.183418-CDS-H-paniculata_contig17631:1159..15211622929380.183418-CDS-H-paniculata_contig17631:1159..1521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17631 1160..1521 -
1691480838.4058037-CDS-H-paniculata_contig17631:1159..15211691480838.4058037-CDS-H-paniculata_contig17631:1159..1521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17631 1160..1521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17631.4195.1prot_H-paniculata_contig17631.4195.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17631 238..1521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17631.4195.1

>prot_H-paniculata_contig17631.4195.1 ID=prot_H-paniculata_contig17631.4195.1|Name=mRNA_H-paniculata_contig17631.4195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=183bp
MAGLSLSNSSLSSAHAISISKMTTNGNRGVVASVVWLLIATGLCFPWLVE
REDGSKDQTLEKSISWFVMLAFDLGVSTVCVFSLWLRRSAMSMMLLIWGS
FCIIGTFLLGSFAMIPAVATMCCCAPELCKLGAADITALNNDFCYIPLDM
CMTTPWSFWCFYGGILLAMVSMVLLVNSVAFHH
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mRNA from alignment at H-paniculata_contig17631:238..1521-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17631.4195.1 ID=mRNA_H-paniculata_contig17631.4195.1|Name=mRNA_H-paniculata_contig17631.4195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1284bp|location=Sequence derived from alignment at H-paniculata_contig17631:238..1521- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGGGCTGTCCCTGTCGAACAGCAGCTTGAGTTCGGCTCACGCTAT
CTCAATATCCAAGATGACTACAAACGGGAATCGCGGTGTGGTGGCCTCGG
TTGTTTGGCTTTTAATCGCAACGGGCTTGTGCTTTCCCTGGCTAGTTGAA
CGCGAGGACGGCAGCAAGGACCAGACTCTGGAAAAATCTATATCTTGGTT
CGTGATGTTGGCGTTCGACCTGGGGGTGTCCACGGTTTGCGTGTTTTCTC
TGTGGCTTCGCAGGAGCGCCATGAGTATGATGCTGCTCATCTGGGGCTCT
TTCTGCATCATTGGCACGTTCTTGCTGGGGAGCTTTGCAATGATTCCGGC
GGTGGCTACAATGTAAGTTGAACAAGGAAGGGGGAAGGGATTTGCTGCTG
TGCGCGCTCTGACTGTACTGAAGGTGCCGGTAGGCAAAAGTCGCTCGGTT
TCCATACAAAGTGGTAAACTCTGTAAGATATCAAAATCTGCAGAGAATTG
AAGCCGAATGTTTACTGCGCAATGTCCGACGATTCGAATGTCCAAGAAAA
CTCGGTAATGCCTGGCCAACCATCCCACGAGTAGATCGATAGATAGAGCT
ACAGTATACAGAGTAAATGTGCATGAGGGCAGCTGCGCGCCGATGATGCC
ACAGACATACAGCATCCCCCTCAATGTGTGCGCAAATAGAGCTCCATATA
CCGTTGACTCGCACTGTCAAATACGCGATTTAATCGTACACGCGAATTCT
GCATAATCAGAACATCAAGATACAGATGGATACCTCTAGTTTACATGTAT
ACAATTCATAAAAATCATAATTCGCATATGTATATCGTCGAAAATGAATC
GCAGAACGGTAAGAAAATACGGCTTCGAGGTCGGATATGCGGAATATTTC
TCTTGTTTTCTGTTGCCTGTATATATTTCTTTCGACCATTGAGACATCAC
AGCCCCGTTCAATAGTACGGCCCTCAATTGAGTAACCATTGAGCTCACTA
CAAGTTGCTGGGCAACGCTGTAATCTTGTTCGGTGATTGACGTGCATGAT
TCCCCACCAAATCTTGATCATTGACCCAATTTGCTGCATTTCATCAGGTG
CTGCTGCGCGCCGGAGCTATGCAAGCTTGGCGCCGCGGATATCACCGCTT
TGAATAATGACTTTTGCTATATCCCCTTGGATATGTGCATGACAACCCCA
TGGTCATTTTGGTGCTTCTACGGCGGTATCCTCCTGGCTATGGTGTCCAT
GGTTCTTCTCGTCAACTCGGTAGCCTTCCACCAC
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Coding sequence (CDS) from alignment at H-paniculata_contig17631:238..1521-

>mRNA_H-paniculata_contig17631.4195.1 ID=mRNA_H-paniculata_contig17631.4195.1|Name=mRNA_H-paniculata_contig17631.4195.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1098bp|location=Sequence derived from alignment at H-paniculata_contig17631:238..1521- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGGGCTGTCCCTGTCGAACAGCAGCTTGAGTTCGGCTCACGCTAT
CTCAATATCCAAGATGACTACAAACGGGAATCGCGGTGTGGTGGCCTCGG
TTGTTTGGCTTTTAATCGCAACGGGCTTGTGCTTTCCCTGGCTAGTTGAA
CGCGAGGACGGCAGCAAGGACCAGACTCTGGAAAAATCTATATCTTGGTT
CGTGATGTTGGCGTTCGACCTGGGGGTGTCCACGGTTTGCGTGTTTTCTC
TGTGGCTTCGCAGGAGCGCCATGAGTATGATGCTGCTCATCTGGGGCTCT
TTCTGCATCATTGGCACGTTCTTGCTGGGGAGCTTTGCAATGATTCCGGC
GGTGGCTACAATATGGCAGGGCTGTCCCTGTCGAACAGCAGCTTGAGTTC
GGCTCACGCTATCTCAATATCCAAGATGACTACAAACGGGAATCGCGGTG
TGGTGGCCTCGGTTGTTTGGCTTTTAATCGCAACGGGCTTGTGCTTTCCC
TGGCTAGTTGAACGCGAGGACGGCAGCAAGGACCAGACTCTGGAAAAATC
TATATCTTGGTTCGTGATGTTGGCGTTCGACCTGGGGGTGTCCACGGTTT
GCGTGTTTTCTCTGTGGCTTCGCAGGAGCGCCATGAGTATGATGCTGCTC
ATCTGGGGCTCTTTCTGCATCATTGGCACGTTCTTGCTGGGGAGCTTTGC
AATGATTCCGGCGGTGGCTACAATGTGCTGCTGCGCGCCGGAGCTATGCA
AGCTTGGCGCCGCGGATATCACCGCTTTGAATAATGACTTTTGCTATATC
CCCTTGGATATGTGCATGACAACCCCATGGTCATTTTGGTGCTTCTACGG
CGGTATCCTCCTGGCTATGGTGTCCATGGTTCTTCTCGTCAACTCGGTAG
CCTTCCACCACGTGCTGCTGCGCGCCGGAGCTATGCAAGCTTGGCGCCGC
GGATATCACCGCTTTGAATAATGACTTTTGCTATATCCCCTTGGATATGT
GCATGACAACCCCATGGTCATTTTGGTGCTTCTACGGCGGTATCCTCCTG
GCTATGGTGTCCATGGTTCTTCTCGTCAACTCGGTAGCCTTCCACCAC
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