prot_H-paniculata_contig176.4185.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig176.4185.1
Unique Nameprot_H-paniculata_contig176.4185.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length185
Homology
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BLAST of mRNA_H-paniculata_contig176.4185.1 vs. uniprot
Match: D8LGS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS6_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 1.190e-45
Identity = 101/183 (55.19%), Postives = 117/183 (63.93%), Query Frame = 0 
Query:   10 LGVFFLFAAYLNLNDPDWILWSTAYSLGALICGWTV--AAGA----AKGV-QPRSSRLRRSLAMAYGAACLGLAYHSAFLSPTNDGDGAGPDKGLLLSFLSSEVAREAGGALIMAQAMALCTGVG---SATAGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLPGYLQRTGIAVPAHCGG 182
            LG FFL A+YLNLNDPDWILWSTAY+LGA++CGW+   AAGA    A+G  +  +S  RR  AMAYGAACLGLA HSAFL+P  +    G D G++L+FLSSEVAREAGGA I+AQAMA+C  V     ATA G                              +LPGYLQR GIAVPAHCGG
Sbjct:   12 LGAFFLLASYLNLNDPDWILWSTAYALGAVVCGWSALQAAGAVGRGARGTAKDDASYSRRMTAMAYGAACLGLAGHSAFLAPRGEPLETGND-GIVLTFLSSEVAREAGGAFILAQAMAMCAFVWRPRDATATGAPSTSGRAVIGVVSVAVALAGVVLG----VYLPGYLQRAGIAVPAHCGG 189
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig176.4185.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGS6_ECTSI1.190e-4555.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029377TMEM220 proteinPFAMPF15071TMEM220coord: 13..123
e-value: 1.1E-20
score: 74.2
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 5..22
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 144..165
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 166..184
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..27
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..4
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 62..80
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 81..143
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 51..61
NoneNo IPR availableTMHMMTMhelixcoord: 143..165
NoneNo IPR availableTMHMMTMhelixcoord: 114..136
NoneNo IPR availableTMHMMTMhelixcoord: 27..49
NoneNo IPR availableTMHMMTMhelixcoord: 62..81
NoneNo IPR availableTMHMMTMhelixcoord: 5..22

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig176contigH-paniculata_contig176:1654..4043 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig176.4185.1mRNA_H-paniculata_contig176.4185.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig176 709..8685 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig176.4185.1 ID=prot_H-paniculata_contig176.4185.1|Name=mRNA_H-paniculata_contig176.4185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
MLQVFPIFVLGVFFLFAAYLNLNDPDWILWSTAYSLGALICGWTVAAGAA
KGVQPRSSRLRRSLAMAYGAACLGLAYHSAFLSPTNDGDGAGPDKGLLLS
FLSSEVAREAGGALIMAQAMALCTGVGSATAGGGAAGSTSGQGVTAVGIV
TAAVALAAIVLGAFLPGYLQRTGIAVPAHCGGIE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029377TMEM220