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Homology
BLAST of mRNA_H-paniculata_contig176.4185.1 vs. uniprot
Match: D8LGS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGS6_ECTSI) HSP 1 Score: 159 bits (401), Expect = 3.470e-42 Identity = 104/189 (55.03%), Postives = 120/189 (63.49%), Query Frame = 1
Query: 124 VFPIFVLGVFFLFAAYLNLNDPDWILWSTAYSLGALICGWTV--AAGA----AKGV-QPRSSRLRRSLAMAYGAACLGLAYHSAFLSPTNDGDGAGPDKGLLLSFLSSEVAREAGGALIMAQAMALCTGVG---SATAGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXAFLPGYLQRTGIAVPAHCGG 660
V PI LG FFL A+YLNLNDPDWILWSTAY+LGA++CGW+ AAGA A+G + +S RR AMAYGAACLGLA HSAFL+P + G D G++L+FLSSEVAREAGGA I+AQAMA+C V ATA G +LPGYLQR GIAVPAHCGG
Sbjct: 7 VAPI-ALGAFFLLASYLNLNDPDWILWSTAYALGAVVCGWSALQAAGAVGRGARGTAKDDASYSRRMTAMAYGAACLGLAGHSAFLAPRGEPLETGND-GIVLTFLSSEVAREAGGAFILAQAMAMCAFVWRPRDATATGAPSTSGRAVIGVVSVAVALAGVVLG----VYLPGYLQRAGIAVPAHCGG 189
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | signal peptide |
| Ec32 ortholog description | TMEM220 protein |
| Ec32 ortholog | Ec-07_005180.1 |
| Exons | 3 |
| Model size | 1614 |
| Cds size | 555 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig176.4185.1 >prot_H-paniculata_contig176.4185.1 ID=prot_H-paniculata_contig176.4185.1|Name=mRNA_H-paniculata_contig176.4185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
MLQVFPIFVLGVFFLFAAYLNLNDPDWILWSTAYSLGALICGWTVAAGAA
KGVQPRSSRLRRSLAMAYGAACLGLAYHSAFLSPTNDGDGAGPDKGLLLS
FLSSEVAREAGGALIMAQAMALCTGVGSATAGGGAAGSTSGQGVTAVGIV
TAAVALAAIVLGAFLPGYLQRTGIAVPAHCGGIE* back to topmRNA from alignment at H-paniculata_contig176:709..8685- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig176.4185.1 ID=mRNA_H-paniculata_contig176.4185.1|Name=mRNA_H-paniculata_contig176.4185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7977bp|location=Sequence derived from alignment at H-paniculata_contig176:709..8685- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TATTGAGGGACCACCACTACGCGATATCCTCTCCACTCCCCTATCTTCTT
ACGCTGGTGATTCTTCATTCAATTTGGTTGATACATCTATTGAAATTCAA
CGGAGAGATCAGGTCAGTCTGCCCTAACAATATATGTTTTGATGGAGGAG
GCATGACTCCCTTCCCGGAACATGTTGTGGATGATGGGAGTACTGCTCTC
ACTCTGTACGGACAGTCAGTAACTGCGCTGGCTCTTCGTTGGTGTGGTCT
GTTAGGAGGTGGTGTAATGGCTAGTAGAATGCGTTGACATTTGAAGGGTG
TTGGGATTTTGAGAAGTGCATAGAGCATATGACACGTGGACTCCGTCAGC
ACTGGGCGGGCTGTAAGAGCGCTGCTGTTGCTCTGTATGTAGGATGTATG
CATACCGCCAGCAGTCATAAAGCCGACAAACTAGCTTCAGCTTATTAAAC
AAAGTCAGACGGACAAACTACCGCTGACGGTGAAGAAGTGGCGACAGTCA
TATAATGCTAATTTATATTGTATGTTCACACTATCAGATATAGGATAGCT
CGCGGTTCAGTACTTACCAACAAAATGACGTGAAATTGGGGTATTTTGGC
ATTCCTGGTTGGAACCTCTTCATGCTAAGAAGTTTTTCCTAATTTGAAAA
AGCGGCGGAATTTACTCTGCTTTGAAAAATCTGTTTGTTATACCGTGCGA
TCGTAACTGAAGATGTACAACAGTATTATAGTATGAGTTGGGAAAGAACA
TGTGTGTAGTTCTTCTTGTCGAAACCTCTGTATTTATTTTAATTCTGTGA
ATTGTTGATGTGCTGATATGATCTGGCGAAATTTGATCTATCTTCGAAAT
TATTTACTGGCTGTACCATAGCCCCAAGTGTTGAGCGAGAGGACCCTGGG
ACAGAAGGCGTGAATGCCTGGGAGGGCCCTCTGGAGTTGTAGATGGGGGG
GGGGGGGTCCGGAGCAGGAGCAATAGGTGTAGCGGTGGCTATCGAAGCTG
CAGATTCTCGGCAGGGAAAGACCCTGGCGGGGGGTGTCCTTTTGGCAATT
TGGGCAAGGGGGAACACTCCTTGTCCAAGGTAAAAGGATGCAAAACTGAA
CGTATATACTCTGTTCTGTTCAAGGAAATGTAGAAATACTTCGGTAAAAT
ATTCAAGTATGGAAACATTGGATAAAGGTTTTTGCCTTAGCATTCCGGGG
GTTAAAAAAAAAGAAGAACTGAACGTTGCGTAGGGACCTGATGGATCGGT
TAGGTTAACCACAGAGATAAGAAACGGTCAGATTAGGGAGGTTTTCAGAG
CTGTCGCGATCGAGTGTCTAATTCTTGAGGTCTCAAGGCGTGTCTTGTCG
AAGAACGACTTAGGAAAGGGATCTGCGTCGTTTTTCCCTCGACATAGTAC
TCTTCTTCTCAATCCGAACGAATTTTTCACCCTCCGGACAAATACGAATA
TTAGGCGTATTCGCCATGAAAATGAAAAGGTATTCGCCTGAGTTTCAGAA
TGAGCAGACGCATAGAATAAAGTACCTACCCCTGTCCATTCGATTTACGA
GTATCATTAGCGGTCGTGAATGGTCCCAGGCTCATAGAATACACGAGCTC
ACGCTGAAACTCAGGCGAGTATTTTTTCAAAAATAGCTTCTGCGAATAGT
AATCAATCTAGAACAGTTACAAAAATTGCTAATGAAAAAGTAAATTAACA
TTGTAATATTATATTATTGGCAACCAAAAATGATATCATCAATGTAATAG
AATAATACTGATATGTAAAGGAAAAATATATATATACCGCATCAAACGTA
ATATAAATGATAGATCTTATATATATATTTACTTATTAATTAAAATTAAA
AACTTAGAAAAATATGTCATCGTATTAAAACTATATTATTAATAAAATGA
ACCAATAGTACTTATCATGAAATAGACAAAAAAATAATATGAAAAATCAT
TCAAGGATAAGGTAGGATTTGAACCCACAGCAAATTTTAATTGCGACAGT
TTTCGAAACTGCTACCTTGGACCTCTCAGTCATTTGTCCTTATATACCTT
ACTAATAATACATGCGGTGTCTTAATTTTTGCGATCTTATATTATCGGCA
ACCAAAAATCGTGGCGAGTACGCCAAGCATTTGTAATTGTCAGAGGGGGG
AATGTTGGGAAAACGACTTTGGCAGCGACCGGCGACTTCGAAACGGTACG
CGGCATCACGAAATTGCAACTGTCATCAGTCCCCCCGGTCCTGTCAGTGA
CGGGAGAACCAGCCATCACGAAGCACAGTTTCTACAGAGGTTGAAAGACA
AGCATCAAGCCCGACGATGCGCGTAATTCCCAGCAGGACCGTCAGGTGGT
CTTCCCGTCGACGAGTATCCTCAAAGATCAAGAAGATGGCGCGACATCTG
GTGGTGTTGGTGGACCTCCTCGGTACGGTAATCTAGCTGGAAGAACTATG
CACCGGAACGTCAGAGATCAAGAGGCGCACCACACTCTTGCATCTCAAAC
AGCGTTCATGGTGCGAGTACATTAAGCCCATGATCGCAGACAATACGTTT
CCCTTCTTTGTGCCGTTTGCCTACTACATTGGGCGTTGACGATAGTTGCC
CACGCTTCTTACCGCGTCCCTCCACGGGTTCGCCTTCAGACGCCATTATG
TGTGCGACACAGCAGTGCCACGGTGGTACTTCAAGACATACCGAAGGGAG
CAAGACAGCAGGGTACAGGGTCCTATGCCACCGCCCCTCCACTTGGTCGG
TATTCTGTTCCCCTATAGACTCCTTTCGGAATTTTGGGCCCACACTCCTT
TTAACTAAAGTCCTCCAGTACTTTTCTAAAACGACGTTGGAGACTCCCTC
CGATGTGGGATAGGAAATATCCAGAAAATGTTTTGTGGACTTTCGAAATG
TCCAAGAAACTTCCCCGCCTATCACCGGTCAGGAAAACAAGATCGTTTTC
CCCAAAAGCGAAAGTCGTCTCTCGATAAGTCACGGCCTCACCAGTTGAGA
GGTCCCGGCAGCGTTGATTTGGACGAGTTTTGAGCTCTCCCAACCGTGTG
TGTGTGGTTGAAGATCCGGATCTTCTGACTGTAGTCTCTACACCAACTTT
CAACTGTTCATTTCATTGCAGTGCCCTTTCTATATCTTGTGTCTTATCTC
AAGTATGCCAGGTTATCGTACAAGAGTTGCACCCCCGGGACAAATACGAA
TGAAGCATTCGCAACTATCTCGAACTATCATTATTTGCCTTGGGTAGACA
CGTATTTATACGTTTACAAGTGTATGAATGGTCACTCTTCAGATGGTTAC
CAGGTGATCGTGTACCCGGTGAACAGTCACACATGTAGGTCCTGTTTAGT
TTCCGGGTGGTACTGTACAGATTGAATACTCTATCTGCCCGAGATTTTCG
ATGCTCCATGGTATATCCAGTACAAGCATATTATTCGTGTCTTCTATTCG
TGTTTGTCCGGGGCGTGAAGAGTTGGCATATCGATCTTTGTGGTCATGTC
TTCGCTCTACGGGCAACTCCAACCGCCGCATGTTTGAAGTGCATTTGAGA
ACGTTGCACGTCGAGTGCATATCACTGGAAGCGATCTTTTGAACACCGCT
GTGCAGACCTTTCTAGCGAGCGCACCCAACTTGGTTGAATCTCTGGCATA
CTCGAAATTAAAAAGAGAAGAAGGCATGACGTGATAAACTAGCTTTACAA
CGGCCGCCACTTTGAAATTAGGGGAGAAACCATCGACGTCGACCAAGGTG
GCCGAGTGCCCCTGTGAAGGTGATTTCATAAATCGGCCAATGAGAAGGAA
ATCAATGTTTGTTGTTTTTGCTAAAAAATGGCACAAGAAATTGAGTTTGA
ACTGCCTCAGAGGTTGAGAAACCACCACATAAAAACCTGCGATACGCCAG
CTATCCCAGATAGGAAGCTGCCACTGCTGCACGTACATCAAAGAGTCAGC
TGGCAAAATGTTAGAAACAGCGATTACCAGGAAAACGATTCTTCCTATCC
TTCGCCTGGAAAAACTTGGATAAAATAGATATGTCTCAATATACTATCCG
AAACAATTGCTCAGCCCCGGCCCAAGACTTTCTTAGTAGCGAGCCGCGAC
TGTACTGACCAAAACCTGTTATCATTGGCATATGAGCAGGACAAATGACA
AATGAGGGCGCAGCGATCAAGGATGACGGAGAGACCAAACGTAAGCCCCG
ATTGTGGGCCGCTTTCAACAAAAGCATGTCACCACCATGTTAACGACACT
CCCCGATGGCTACGCAATCCTGACGGTCCCGCTGAATGGAAACCTAGCCC
CCGGTTCCATTTGACGGCGAGGTTCATGTAGCTCGTGATGTCGAAATCAC
TTGTCTGGCAATCTGCATGTTCCTGCTGCGGGCACTTTTTAGGGGTAACG
GATGTGACTGTGTGCTGTGGCTCATCCTGAATAATACGGTGTGGTCGCTG
CATCGTCCCATCCTTCCAGCTCCGCCATCTCTTCGACGACCTTTGGCCAC
GGCAAATCGATGTTCTCATGTTTTCATGTTCTCAAGCAGTAGCAACTGCG
AAACCCCACAAGGCGTTTTTGTGTCATTCATCGCTACGCGCCCGTTCCTT
TGCTCCTCGGTCCGTATCCCTGGTGCTGATATATGTTCAGCTATGTTGCA
GGTTTTCCCCATATTCGTTCTTGGCGTCTTCTTCCTTTTTGCCGCCTATC
TCAATCTGAACGACCCGGATTGGATTTTGTGGTCTACCGCCTACTCGCTT
GGTGCTCTTATATGCGGTTGGACGGTAGCGGCAGGGGCGGCGAAGGGCGT
TCAACCGAGGAGCTCCCGATTGCGCAGGTGTGCTAGACGGCAATTTTGTT
TTGCACTATTTTCGATGTACAAGTACCTTGAAACCGAGGAGGAAGATGGA
CAGGGGTGGGCACTTTATTTTATGTGTCCGCTCATTCTGAAACTCTGGTG
AATACTTTCAGTTTTTTGTGAAAACCATTTGCAAGTATTCGCATTTGTCC
GGGGGGAAGTTTAAATTTCACAACTGTTGGTGAGCTGTGTAGGCGATGAA
ATATCAGCACTAGGTGTCACGTCTTATCAGAATGCACGCGCCCCACCTTC
CCAAGAACGGACGGAATCGGTGATGCTTTCCAATGAAGGAGCGCAGCCTA
AAAGCCGATTAAAGTCATGGAACGAGCACGTCTGCACTAAACATACTGGT
TTAGAGTGCTCCCTGCAGTCCCATTTTTGGCGGCAGCTTTTGCTGCACAG
AATGTTTTTCCTGCATGCATATGACCTGTTTTTTTTACCGAACAATGCGA
ACTCGAGCTTAGAGTTGACGGGACTGAACTGAGAGCACCTATTTCACTAG
GTGCTGCAAGATGCGACGGCATTTTGTCCGCTCACCAGCCTCATGTAGCT
TTTACTACTCTGCCGGTACGATAGCCGTGCAGCTACGGACAGAGTACAGC
AATCCTACTGCCAAGCCAACAGAACGACGCACTCCACCGTTTGCATTTTT
GCAATGCCACACGATAATGTCCGACCTGTGGCCAGCTATCAATATCAGCC
CAATTGACGTGTACTGTACTTCTTTCGTGCCTGGCGGTGGGAGCTTCGAA
AGCTCTTCCAGAACTCCTACACGGGCATCCGTCCATATAATCGTATTCCA
TAGCTCTTCCGCTAGATAGATTTATGTCTTCCATTGGCATGCTAGACAAT
TTGTAGTTTTCGGTGTGATGAATAAGGATGGTAAACGAATTTTCGGGTTT
AAAAACAAGAGTATTTCGGGTAGGACCAAAAAGCCAAACGGATCGTGTTT
TTTTTTTTTGTATGTACAGATATATGTTTTTGATTAGATGTCAACTTGCA
ACGGAATTTTGGCCTGTGGTCGCAAAAAACCAGTTTCGGGTCATCAAATC
GCTTCTTTTGCGCACTTTGCCCGAGCATTGAAATTTTTGGTGGGCCTCAA
GCATCTGGTTATTATCTCATGTGCAATAATGCTCCCCCCGAGTTGGATTT
GTGGCTTGTACTGTGTTACAGGCTGATATCTAGTCGACAGCGATAACCAA
AAGTATGTGCTTTCTTTTCTAGCGAAACCAGATTTCCACACATGCGCGTG
ACATGCTAATCAAAGCAGTCGATATTCACAAGGTAACAGCCCCCTGGCCA
TTAATCTTGACACAATGTCTGCAATGTCATGATTGTTCCCGTTCACAGCA
TGTAGTAGCCAGGAGACGTTCCGCATTGGTGCACCATGTTCCCTAGCCGG
ATCTACTCATCCCCCAAAAGGCGAATCGACGTCGATTTCGATACTTGCAA
CCTGCACCGAGAGCATACACGAGCGTTCGCATATACTTTGCAGTAACGTC
ATGTTTCATTACTGTATGCACGACTCAATGCTGACAGTGTAAACTTATGC
AACGACTGCAATGACTCAAGAGCCTCTCTGATGGTGTTGACTCGTCGTCA
GTACCTTCGTCTCTTTGTAAAACCGCCAGGGCCGTAACTATCCTATCGGT
GTGCGCGTGTGTGAAGAGGGAATCTGTTGCCTGTGGAAGTGGGCTCGGGG
TACCAAAAAGTCAGTTTTTTTTCATTAATGCGGAAAGCATATTTGGATTT
GCCTCGGTAAACAGTTCTTCATTTTAGCATCCCCTGCTGTGATACACGCT
CGAGTATTGCAGGTCTCTGGCGATGGCATACGGTGCGGCGTGTTTGGGGC
TCGCCTACCACAGCGCCTTTCTTTCCCCCACCAACGATGGCGACGGTGCG
GGACCAGATAAGGGCTTGTTACTGAGCTTCTTGAGCAGCGAGGTTGCCCG
CGAGGCAGGAGGCGCCCTTATCATGGCACAAGCCATGGCTCTCTGCACAG
GAGTGGGGTCAGCAACCGCAGGTGGCGGAGCAGCGGGCTCGACCTCAGGG
CAAGGAGTGACTGCCGTAGGAATCGTGACAGCGGCGGTTGCCCTAGCTGC
CATCGTTCTGGGAGCGTTTTTACCGGGGTACCTGCAGCGCACCGGTATTG
CGGTACCGGCCCATTGCGGGGGTATTGAGTAAGTTTGGAATATGGAAGGT
TTTGATAGTGCCAGGCGCTGCAGCTTGTTTATATGAAATATATAATGGTT
GTCAGCCGCAGCATTAGCCATAGATGATCCCACGTCGGTATCACCTCCAC
CAAGGGCGAGGATAGGCCACCTTGAGAAACAAAAAAAACATGAGTTTTGT
GCCGTCCTTGGTAATTTCTTGGCTGAGCGAACAGGTGTGAGGTGACCACC
GGACGCATGATAATTTTCCGTAAACCGTCGACGTGACATGGTGAACGAGA
AAGGAAGGTGCTACTTGACCCACAAGTAGCTGTACCAATGGAGAATAAGT
GTGATGAGGTGTGACGAAGTGTAATGAATATAACCAGATAGCGAGAGCTG
CATTGTTTCATGTGGGCTGTCGCATTTGATATCGGGTCGCCCGAACCCGA
TCGCTCGTGTTAGCTCATGCTATTTATGTTGTCTGTACGCAAGCGTTGTT
CAGGTTGTGGAAATTGATCGGGTACATGGTGCGTCACTCGTTTGTGCTGA
CGATGATGGTTTTGTTGGAGTAGAATAGATAATCCCACTACTCCCAAGTT
TGTGAGATGGTGTATGGATGAATGCGCGGCCAAACCGCGGCAGTATTGTT
GATACATTCGCTGGCGCAAGCGGTTCATGTCGATGACGTGATCGGATGTG
TAGTCAGAGCACAACGGGCGCGTACAATGTCATTTTACGATTCACACGGA
ACGGAGCACATTAGGTCGTGGAGATCACTGACCAAACTTTATACACCCTG
CGGATTGTTTGCCCCGTACAACTGATTTGTACCAGACGGATCGTTAGTGC
ATGTTATGCACAGGCCATCCATGCATCGTGTTTTACCGGTACATATTTCG
CCACTAGTGATTCGTATCCCACGGCTCGTATGGATGTTGATATGTCCAAT
GTGTGAAACCTTTTCGCTGGATCAACC back to topCoding sequence (CDS) from alignment at H-paniculata_contig176:709..8685- >mRNA_H-paniculata_contig176.4185.1 ID=mRNA_H-paniculata_contig176.4185.1|Name=mRNA_H-paniculata_contig176.4185.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig176:709..8685- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGCAGGTTTTCCCCATATTCGTTCTTGGCGTCTTCTTCCTTTTTGC
CGCCTATCTCAATCTGAACGACCCGGATTGGATTTTGTGGTCTACCGCCT
ACTCGCTTGGTGCTCTTATATGCGGTTGGACGGTAGCGGCAGGGGCGGCG
AAGGGCGTTCAACCGAGGAGCTCCCGATTGCGCAGATGTTGCAGGTTTTC
CCCATATTCGTTCTTGGCGTCTTCTTCCTTTTTGCCGCCTATCTCAATCT
GAACGACCCGGATTGGATTTTGTGGTCTACCGCCTACTCGCTTGGTGCTC
TTATATGCGGTTGGACGGTAGCGGCAGGGGCGGCGAAGGGCGTTCAACCG
AGGAGCTCCCGATTGCGCAGGTCTCTGGCGATGGCATACGGTGCGGCGTG
TTTGGGGCTCGCCTACCACAGCGCCTTTCTTTCCCCCACCAACGATGGCG
ACGGTGCGGGACCAGATAAGGGCTTGTTACTGAGCTTCTTGAGCAGCGAG
GTTGCCCGCGAGGCAGGAGGCGCCCTTATCATGGCACAAGCCATGGCTCT
CTGCACAGGAGTGGGGTCAGCAACCGCAGGTGGCGGAGCAGCGGGCTCGA
CCTCAGGGCAAGGAGTGACTGCCGTAGGAATCGTGACAGCGGCGGTTGCC
CTAGCTGCCATCGTTCTGGGAGCGTTTTTACCGGGGTACCTGCAGCGCAC
CGGTATTGCGGTACCGGCCCATTGCGGGGGTATTGAGTAAGTCTCTGGCG
ATGGCATACGGTGCGGCGTGTTTGGGGCTCGCCTACCACAGCGCCTTTCT
TTCCCCCACCAACGATGGCGACGGTGCGGGACCAGATAAGGGCTTGTTAC
TGAGCTTCTTGAGCAGCGAGGTTGCCCGCGAGGCAGGAGGCGCCCTTATC
ATGGCACAAGCCATGGCTCTCTGCACAGGAGTGGGGTCAGCAACCGCAGG
TGGCGGAGCAGCGGGCTCGACCTCAGGGCAAGGAGTGACTGCCGTAGGAA
TCGTGACAGCGGCGGTTGCCCTAGCTGCCATCGTTCTGGGAGCGTTTTTA
CCGGGGTACCTGCAGCGCACCGGTATTGCGGTACCGGCCCATTGCGGGGG
TATTGAGTAA back to top
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