prot_H-paniculata_contig17577.4179.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig17577.4179.1
Unique Name	prot_H-paniculata_contig17577.4179.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	219

Homology

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BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 362 bits (930), Expect = 1.520e-112
Identity = 182/219 (83.11%), Postives = 200/219 (91.32%), Query Frame = 0

Query:    1 LRIH-RYFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 218
            LR H RYF RKKAPGQID R+KN RFIGELVKFRVAPPVVAFQCL++CLDDFSSL++QTMAALL+TCGRFLFRQ LTHQR ++FLTVMMK+K AKNLD R EA+VDN+FYTCCPPERQQR AKVRTPLQ Y+RHLM++KLRDDP+VVE VIKQLRKLPWQDPE  VESEVLRASLRLCR+RYP IHLAADVLSGLAR+QD VAVKAVDAVLEA+ R IE
Sbjct:  946 LRSHFRYFLRKKAPGQIDHRIKNARFIGELVKFRVAPPVVAFQCLRSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKVKSAKNLDKRLEAVVDNAFYTCCPPERQQRTAKVRTPLQLYVRHLMMDKLRDDPDVVEEVIKQLRKLPWQDPEADVESEVLRASLRLCRSRYPCIHLAADVLSGLARHQDRVAVKAVDAVLEAMHRAIE 1164

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BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A1D6HDV8_MAIZE (Regulator of nonsense transcripts UPF2 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6HDV8_MAIZE)

HSP 1 Score: 199 bits (507), Expect = 1.590e-58
Identity = 102/213 (47.89%), Postives = 138/213 (64.79%), Query Frame = 0

Query:    6 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 218
            +   KK    I+ ++KN+RFIGEL KF++APP + F CLK+CLDDFS  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  R++KVR PL  YIR L+   L  D   VE V++QLRKLPW +     +  +L+  L++ + +Y  +HL A + + L+RY D  AV  VD VLE IR G+E
Sbjct:   87 FLINKKDQINIETKIKNIRFIGELCKFKMAPPALVFSCLKSCLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARISKVRPPLHQYIRKLLFSDL--DKSSVEHVLRQLRKLPWAE----CQQYLLKCFLKVHKGKYSQVHLIALLTASLSRYHDDFAVAVVDEVLEEIRVGLE 293

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BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A0V0J0A4_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0J0A4_SOLCH)

HSP 1 Score: 198 bits (504), Expect = 5.740e-58
Identity = 102/213 (47.89%), Postives = 138/213 (64.79%), Query Frame = 0

Query:    6 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 218
            +   KK    I+ +++N+RFIGEL KFR+APP + F CLK CLDDFS  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  RV+K+R PL  YIR L+   L  D   +E V++QLRKLPW +     E+ +L+  +++ R +Y  IHL A + + L+RY D  +V  VD VLE IR G+E
Sbjct:  197 FLINKKDQMNIETKIRNIRFIGELCKFRIAPPGLVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHITLVENAYYLCKPPERSARVSKIRPPLHQYIRKLLFSDL--DKSSLEHVLRQLRKLPWSE----CEAYLLKCFMKVHRGKYGQIHLIASLTACLSRYHDDFSVAVVDEVLEEIRVGLE 403

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BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A453P4T8_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453P4T8_AEGTS)

HSP 1 Score: 199 bits (505), Expect = 1.240e-57
Identity = 103/213 (48.36%), Postives = 137/213 (64.32%), Query Frame = 0

Query:    6 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 218
            +   KK    I+ ++KN+RFIGEL KF++AP  + F CLK CLDDFS  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  RV+KVR PL  YIR L+   L  D   VE V++QLRKLPW    V  +  +++  L++ + +Y  +HL A + +GL+RY D  AV  VD VLE IR G+E
Sbjct:  154 FLINKKDQINIETKIKNIRFIGELCKFKIAPAALVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLYQYIRKLLFSDL--DKSSVEHVLRQLRKLPW----VECQQYLVKCFLKVHKGKYSQVHLIALLTAGLSRYHDDFAVAVVDEVLEEIRVGLE 360

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BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A835USC6_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835USC6_VANPL)

HSP 1 Score: 200 bits (508), Expect = 1.520e-57
Identity = 102/213 (47.89%), Postives = 136/213 (63.85%), Query Frame = 0

Query:    6 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 218
            +   KK    I+ ++KN+RFIGEL KFR+AP  + F CLK CLDDF+  +I     LL+TCGRFL+RQ  T  RM N L ++++LK  KNLDPR   LV+N++Y C PPER  RVAKVR PL  YIR L+   L  D    E V++QLRKLPW +     E  +L+  +++ + +Y  +HL A + +GL+RY    AV  VD VLE IR G+E
Sbjct:  284 FLINKKDQTNIETKIKNIRFIGELCKFRIAPATLVFSCLKACLDDFNHHNIDVACNLLETCGRFLYRQPETSIRMANMLEILVRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDL--DKSSAEHVLRQLRKLPWHE----CEQYILKCFMKVHKGKYSQVHLIALLTAGLSRYHSEFAVAVVDEVLEEIRVGLE 490

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BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A2Z6PG28_TRISU (Uncharacterized protein n=5 Tax=Trifolium TaxID=3898 RepID=A0A2Z6PG28_TRISU)

HSP 1 Score: 204 bits (520), Expect = 4.240e-57
Identity = 103/213 (48.36%), Postives = 139/213 (65.26%), Query Frame = 0

Query:    6 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 218
            +   KK    I+ +++N+RFIGEL KF++APP + F CLK CLDDFS  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  RVAK+R PL  YIR L+   L  D   +E V++QLRKLPW D E+ +    L+  +++ + +Y  IHL A + +GL+RY D  A+  VD VLE IR G+E
Sbjct:  525 FLINKKDQMNIETKIRNIRFIGELCKFKIAPPGLVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETSIRMGNMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKIRPPLHQYIRKLLFSDL--DKSTIEHVLRQLRKLPWSDCELYL----LKCFMKVHKGKYGQIHLIASLAAGLSRYHDEFAIAIVDEVLEEIRIGLE 731

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BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A2R6PL20_ACTCC (Regulator of nonsense transcripts like n=2 Tax=Actinidia TaxID=3624 RepID=A0A2R6PL20_ACTCC)

HSP 1 Score: 204 bits (519), Expect = 5.740e-57
Identity = 104/213 (48.83%), Postives = 140/213 (65.73%), Query Frame = 0

Query:    6 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 218
            +   KK    I+ ++KN+RFIGEL KF++AP  + F CLKTCLDDF+  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  RV+KVR PL  YIR L+   L  D   +E+V++QLRKLPW +     E+ +L+  +++ R +Y  IHL A + +GL+RY D  AV  VD VLE IR G+E
Sbjct:  555 FLINKKDQMNIETKIKNIRFIGELCKFKIAPAGLVFSCLKTCLDDFTHHNIDVACNLLETCGRFLYRSPETAVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDL--DKSSIEQVLRQLRKLPWNE----CETYLLKCFMKVHRGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLE 761

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BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A6P5F9Z5_ANACO (regulator of nonsense transcripts UPF2 isoform X1 n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5F9Z5_ANACO)

HSP 1 Score: 204 bits (519), Expect = 5.770e-57
Identity = 106/213 (49.77%), Postives = 137/213 (64.32%), Query Frame = 0

Query:    6 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 218
            Y   KK    I+ ++KN+RFIGEL KFR+APP + F CLK CLDDF+  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  RV+KVR PL  YIR L+   L  D   VE V++QLRKLPW +     E  +++  L++ R +Y  +HL A + +GL RY D  AV  VD VLE IR G+E
Sbjct:  552 YLINKKDQTNIETKIKNIRFIGELCKFRMAPPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDL--DKSTVENVLRQLRKLPWAE----CEQYLVKCFLKVHRGKYSQVHLIALLTAGLGRYHDDFAVAIVDEVLEEIRVGLE 758

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BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A0R0I5U3_SOYBN (Uncharacterized protein n=1 Tax=Glycine max TaxID=3847 RepID=A0A0R0I5U3_SOYBN)

HSP 1 Score: 202 bits (513), Expect = 1.010e-56
Identity = 102/213 (47.89%), Postives = 138/213 (64.79%), Query Frame = 0

Query:    6 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 218
            +   KK    I+ +++N+RFIGEL KF+++PP + F CLK CLDDF+  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  RVAKVR PL  YIR L+   L  D   +E V++QLRKLPW +     E  +L+  +++ + +Y  IHL A + +GL+RY D  AV  VD VLE IR G+E
Sbjct:  548 FLINKKDQMNIETKIRNIRFIGELCKFKISPPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDL--DKSTIEHVLRQLRKLPWNE----CEPYLLKCFMKVYKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLE 754

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BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A6P8CC04_PUNGR (regulator of nonsense transcripts UPF2 n=1 Tax=Punica granatum TaxID=22663 RepID=A0A6P8CC04_PUNGR)

HSP 1 Score: 203 bits (517), Expect = 1.070e-56
Identity = 104/214 (48.60%), Postives = 140/214 (65.42%), Query Frame = 0

Query:    6 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIEV 219
            +   KK    I+ +++N+RFIGEL KFR+AP  + F CLK CLDDF+  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  RV+KVR PL  YIR L+   L  D   +E V++QLRKLPW++     E+ +L+  +++ R +Y  IHL A + +GL+RY D  AV  VD VLE IR G+EV
Sbjct:  561 FLINKKDQMNIETKIRNIRFIGELCKFRIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERPARVSKVRPPLYQYIRKLLFSDL--DKSTIEHVLRQLRKLPWRE----CEAYLLKCFMKVHRGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLEV 768

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LEF3_ECTSI	1.520e-112	83.11	Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID...	[more]
A0A1D6HDV8_MAIZE	1.590e-58	47.89	Regulator of nonsense transcripts UPF2 n=2 Tax=Zea...	[more]
A0A0V0J0A4_SOLCH	5.740e-58	47.89	Putative ovule protein n=1 Tax=Solanum chacoense T...	[more]
A0A453P4T8_AEGTS	1.240e-57	48.36	Uncharacterized protein n=1 Tax=Aegilops tauschii ...	[more]
A0A835USC6_VANPL	1.520e-57	47.89	Uncharacterized protein n=1 Tax=Vanilla planifolia...	[more]
A0A2Z6PG28_TRISU	4.240e-57	48.36	Uncharacterized protein n=5 Tax=Trifolium TaxID=38...	[more]
A0A2R6PL20_ACTCC	5.740e-57	48.83	Regulator of nonsense transcripts like n=2 Tax=Act...	[more]
A0A6P5F9Z5_ANACO	5.770e-57	49.77	regulator of nonsense transcripts UPF2 isoform X1 ...	[more]
A0A0R0I5U3_SOYBN	1.010e-56	47.89	Uncharacterized protein n=1 Tax=Glycine max TaxID=...	[more]
A0A6P8CC04_PUNGR	1.070e-56	48.60	regulator of nonsense transcripts UPF2 n=1 Tax=Pun...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016021	MIF4G-like domain superfamily	GENE3D	1.25.40.180		coord: 124..219 e-value: 3.0E-23 score: 84.3
IPR016021	MIF4G-like domain superfamily	GENE3D	1.25.40.180		coord: 1..109 e-value: 1.1E-17 score: 65.9
IPR003890	MIF4G-like, type 3	PFAM	PF02854	MIF4G	coord: 14..109 e-value: 1.3E-13 score: 51.1
IPR039762	Nonsense-mediated mRNA decay protein Nmd2/UPF2	PANTHER	PTHR12839	NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2	coord: 5..219
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 4..116
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 124..218

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig17577	contig	H-paniculata_contig17577:700..3650 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig17577.4179.1	mRNA_H-paniculata_contig17577.4179.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig17577 700..3650 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig17577.4179.1 ID=prot_H-paniculata_contig17577.4179.1|Name=mRNA_H-paniculata_contig17577.4179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
LRIHRYFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDD
FSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRP
EALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVI
KQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDT
VAVKAVDAVLEAIRRGIEV

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR016021	MIF4-like_sf
IPR003890	MIF4G-like_typ-3
IPR039762	Nmd2/UPF2
IPR016024	ARM-type_fold