mRNA_H-paniculata_contig17577.4179.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17577.4179.1
Unique NamemRNA_H-paniculata_contig17577.4179.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: D8LEF3_ECTSI (Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEF3_ECTSI)

HSP 1 Score: 362 bits (930), Expect = 1.520e-112
Identity = 182/219 (83.11%), Postives = 200/219 (91.32%), Query Frame = 1 
Query:    1 LRIH-RYFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 654
            LR H RYF RKKAPGQID R+KN RFIGELVKFRVAPPVVAFQCL++CLDDFSSL++QTMAALL+TCGRFLFRQ LTHQR ++FLTVMMK+K AKNLD R EA+VDN+FYTCCPPERQQR AKVRTPLQ Y+RHLM++KLRDDP+VVE VIKQLRKLPWQDPE  VESEVLRASLRLCR+RYP IHLAADVLSGLAR+QD VAVKAVDAVLEA+ R IE
Sbjct:  946 LRSHFRYFLRKKAPGQIDHRIKNARFIGELVKFRVAPPVVAFQCLRSCLDDFSSLAVQTMAALLETCGRFLFRQKLTHQRTRSFLTVMMKVKSAKNLDKRLEAVVDNAFYTCCPPERQQRTAKVRTPLQLYVRHLMMDKLRDDPDVVEEVIKQLRKLPWQDPEADVESEVLRASLRLCRSRYPCIHLAADVLSGLARHQDRVAVKAVDAVLEAMHRAIE 1164
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BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A1D6HDV8_MAIZE (Regulator of nonsense transcripts UPF2 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6HDV8_MAIZE)

HSP 1 Score: 199 bits (507), Expect = 1.590e-58
Identity = 102/213 (47.89%), Postives = 138/213 (64.79%), Query Frame = 1 
Query:   16 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 654
            +   KK    I+ ++KN+RFIGEL KF++APP + F CLK+CLDDFS  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  R++KVR PL  YIR L+   L  D   VE V++QLRKLPW +     +  +L+  L++ + +Y  +HL A + + L+RY D  AV  VD VLE IR G+E
Sbjct:   87 FLINKKDQINIETKIKNIRFIGELCKFKMAPPALVFSCLKSCLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARISKVRPPLHQYIRKLLFSDL--DKSSVEHVLRQLRKLPWAE----CQQYLLKCFLKVHKGKYSQVHLIALLTASLSRYHDDFAVAVVDEVLEEIRVGLE 293
[Close]
BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A0V0J0A4_SOLCH (Putative ovule protein n=1 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0J0A4_SOLCH)

HSP 1 Score: 198 bits (504), Expect = 5.740e-58
Identity = 102/213 (47.89%), Postives = 138/213 (64.79%), Query Frame = 1 
Query:   16 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 654
            +   KK    I+ +++N+RFIGEL KFR+APP + F CLK CLDDFS  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  RV+K+R PL  YIR L+   L  D   +E V++QLRKLPW +     E+ +L+  +++ R +Y  IHL A + + L+RY D  +V  VD VLE IR G+E
Sbjct:  197 FLINKKDQMNIETKIRNIRFIGELCKFRIAPPGLVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHITLVENAYYLCKPPERSARVSKIRPPLHQYIRKLLFSDL--DKSSLEHVLRQLRKLPWSE----CEAYLLKCFMKVHRGKYGQIHLIASLTACLSRYHDDFSVAVVDEVLEEIRVGLE 403
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BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A453P4T8_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453P4T8_AEGTS)

HSP 1 Score: 199 bits (505), Expect = 1.240e-57
Identity = 103/213 (48.36%), Postives = 137/213 (64.32%), Query Frame = 1 
Query:   16 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 654
            +   KK    I+ ++KN+RFIGEL KF++AP  + F CLK CLDDFS  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  RV+KVR PL  YIR L+   L  D   VE V++QLRKLPW    V  +  +++  L++ + +Y  +HL A + +GL+RY D  AV  VD VLE IR G+E
Sbjct:  154 FLINKKDQINIETKIKNIRFIGELCKFKIAPAALVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLYQYIRKLLFSDL--DKSSVEHVLRQLRKLPW----VECQQYLVKCFLKVHKGKYSQVHLIALLTAGLSRYHDDFAVAVVDEVLEEIRVGLE 360
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BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A835USC6_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835USC6_VANPL)

HSP 1 Score: 200 bits (508), Expect = 1.520e-57
Identity = 102/213 (47.89%), Postives = 136/213 (63.85%), Query Frame = 1 
Query:   16 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 654
            +   KK    I+ ++KN+RFIGEL KFR+AP  + F CLK CLDDF+  +I     LL+TCGRFL+RQ  T  RM N L ++++LK  KNLDPR   LV+N++Y C PPER  RVAKVR PL  YIR L+   L  D    E V++QLRKLPW +     E  +L+  +++ + +Y  +HL A + +GL+RY    AV  VD VLE IR G+E
Sbjct:  284 FLINKKDQTNIETKIKNIRFIGELCKFRIAPATLVFSCLKACLDDFNHHNIDVACNLLETCGRFLYRQPETSIRMANMLEILVRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDL--DKSSAEHVLRQLRKLPWHE----CEQYILKCFMKVHKGKYSQVHLIALLTAGLSRYHSEFAVAVVDEVLEEIRVGLE 490
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BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A2Z6PG28_TRISU (Uncharacterized protein n=5 Tax=Trifolium TaxID=3898 RepID=A0A2Z6PG28_TRISU)

HSP 1 Score: 204 bits (520), Expect = 4.240e-57
Identity = 103/213 (48.36%), Postives = 139/213 (65.26%), Query Frame = 1 
Query:   16 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 654
            +   KK    I+ +++N+RFIGEL KF++APP + F CLK CLDDFS  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  RVAK+R PL  YIR L+   L  D   +E V++QLRKLPW D E+ +    L+  +++ + +Y  IHL A + +GL+RY D  A+  VD VLE IR G+E
Sbjct:  525 FLINKKDQMNIETKIRNIRFIGELCKFKIAPPGLVFSCLKACLDDFSHHNIDVACNLLETCGRFLYRSPETSIRMGNMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKIRPPLHQYIRKLLFSDL--DKSTIEHVLRQLRKLPWSDCELYL----LKCFMKVHKGKYGQIHLIASLAAGLSRYHDEFAIAIVDEVLEEIRIGLE 731
[Close]
BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A2R6PL20_ACTCC (Regulator of nonsense transcripts like n=2 Tax=Actinidia TaxID=3624 RepID=A0A2R6PL20_ACTCC)

HSP 1 Score: 204 bits (519), Expect = 5.740e-57
Identity = 104/213 (48.83%), Postives = 140/213 (65.73%), Query Frame = 1 
Query:   16 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 654
            +   KK    I+ ++KN+RFIGEL KF++AP  + F CLKTCLDDF+  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  RV+KVR PL  YIR L+   L  D   +E+V++QLRKLPW +     E+ +L+  +++ R +Y  IHL A + +GL+RY D  AV  VD VLE IR G+E
Sbjct:  555 FLINKKDQMNIETKIKNIRFIGELCKFKIAPAGLVFSCLKTCLDDFTHHNIDVACNLLETCGRFLYRSPETAVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDL--DKSSIEQVLRQLRKLPWNE----CETYLLKCFMKVHRGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLE 761
[Close]
BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A6P5F9Z5_ANACO (regulator of nonsense transcripts UPF2 isoform X1 n=4 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5F9Z5_ANACO)

HSP 1 Score: 204 bits (519), Expect = 5.770e-57
Identity = 106/213 (49.77%), Postives = 137/213 (64.32%), Query Frame = 1 
Query:   16 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 654
            Y   KK    I+ ++KN+RFIGEL KFR+APP + F CLK CLDDF+  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  RV+KVR PL  YIR L+   L  D   VE V++QLRKLPW +     E  +++  L++ R +Y  +HL A + +GL RY D  AV  VD VLE IR G+E
Sbjct:  552 YLINKKDQTNIETKIKNIRFIGELCKFRMAPPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDL--DKSTVENVLRQLRKLPWAE----CEQYLVKCFLKVHRGKYSQVHLIALLTAGLGRYHDDFAVAIVDEVLEEIRVGLE 758
[Close]
BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A0R0I5U3_SOYBN (Uncharacterized protein n=1 Tax=Glycine max TaxID=3847 RepID=A0A0R0I5U3_SOYBN)

HSP 1 Score: 202 bits (513), Expect = 1.010e-56
Identity = 102/213 (47.89%), Postives = 138/213 (64.79%), Query Frame = 1 
Query:   16 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIE 654
            +   KK    I+ +++N+RFIGEL KF+++PP + F CLK CLDDF+  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  RVAKVR PL  YIR L+   L  D   +E V++QLRKLPW +     E  +L+  +++ + +Y  IHL A + +GL+RY D  AV  VD VLE IR G+E
Sbjct:  548 FLINKKDQMNIETKIRNIRFIGELCKFKISPPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDL--DKSTIEHVLRQLRKLPWNE----CEPYLLKCFMKVYKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLE 754
[Close]
BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Match: A0A6P8CC04_PUNGR (regulator of nonsense transcripts UPF2 n=1 Tax=Punica granatum TaxID=22663 RepID=A0A6P8CC04_PUNGR)

HSP 1 Score: 203 bits (517), Expect = 1.070e-56
Identity = 104/214 (48.60%), Postives = 140/214 (65.42%), Query Frame = 1 
Query:   16 YFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDDFSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRPEALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVIKQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDTVAVKAVDAVLEAIRRGIEV 657
            +   KK    I+ +++N+RFIGEL KFR+AP  + F CLK CLDDF+  +I     LL+TCGRFL+R   T  RM N L ++M+LK  KNLDPR   LV+N++Y C PPER  RV+KVR PL  YIR L+   L  D   +E V++QLRKLPW++     E+ +L+  +++ R +Y  IHL A + +GL+RY D  AV  VD VLE IR G+EV
Sbjct:  561 FLINKKDQMNIETKIRNIRFIGELCKFRIAPAGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERPARVSKVRPPLYQYIRKLLFSDL--DKSTIEHVLRQLRKLPWRE----CEAYLLKCFMKVHRGKYGQIHLIASLTAGLSRYHDEFAVAVVDEVLEEIRLGLEV 768
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17577.4179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEF3_ECTSI1.520e-11283.11Putative hUPF2 n=2 Tax=Ectocarpus TaxID=2879 RepID... [more]
A0A1D6HDV8_MAIZE1.590e-5847.89Regulator of nonsense transcripts UPF2 n=2 Tax=Zea... [more]
A0A0V0J0A4_SOLCH5.740e-5847.89Putative ovule protein n=1 Tax=Solanum chacoense T... [more]
A0A453P4T8_AEGTS1.240e-5748.36Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A835USC6_VANPL1.520e-5747.89Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A2Z6PG28_TRISU4.240e-5748.36Uncharacterized protein n=5 Tax=Trifolium TaxID=38... [more]
A0A2R6PL20_ACTCC5.740e-5748.83Regulator of nonsense transcripts like n=2 Tax=Act... [more]
A0A6P5F9Z5_ANACO5.770e-5749.77regulator of nonsense transcripts UPF2 isoform X1 ... [more]
A0A0R0I5U3_SOYBN1.010e-5647.89Uncharacterized protein n=1 Tax=Glycine max TaxID=... [more]
A0A6P8CC04_PUNGR1.070e-5648.60regulator of nonsense transcripts UPF2 n=1 Tax=Pun... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17577contigH-paniculata_contig17577:700..3650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score368.2
Seed ortholog evalue2.6e-99
Seed eggNOG ortholog2880.D8LEF3
Preferred nameUPF2
KEGG koko:K14327
KEGG Pathwayko03013,ko03015,map03013,map03015
KEGG ModuleM00430
Hectar predicted targeting categorymitochondrion
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000956,GO:0001101,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005829,GO:0005844,GO:0006139,GO:0006259,GO:0006310,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007274,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009611,GO:0009617,GO:0009628,GO:0009648,GO:0009719,GO:0009725,GO:0009751,GO:0009753,GO:0009755,GO:0009863,GO:0009867,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019899,GO:0023052,GO:0031503,GO:0031974,GO:0031981,GO:0032870,GO:0032991,GO:0033036,GO:0034427,GO:0034613,GO:0034641,GO:0034655,GO:0035145,GO:0035690,GO:0035770,GO:0036464,GO:0042162,GO:0042221,GO:0042493,GO:0042742,GO:0042886,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046677,GO:0046700,GO:0046907,GO:0048519,GO:0048571,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050808,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070727,GO:0070887,GO:0071166,GO:0071229,GO:0071236,GO:0071310,GO:0071395,GO:0071407,GO:0071426,GO:0071427,GO:0071446,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0097159,GO:0098542,GO:0098916,GO:0099536,GO:0099537,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1901700,GO:1901701,GO:1990904
EggNOG free text desc.nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
EggNOG OGsKOG2051@1,KOG2051@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons5
Model size657
Cds size657
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17577.4179.1prot_H-paniculata_contig17577.4179.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17577 700..3650 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929377.5896838-CDS-H-paniculata_contig17577:699..8791622929377.5896838-CDS-H-paniculata_contig17577:699..879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17577 700..879 -
1691480837.3036954-CDS-H-paniculata_contig17577:699..8791691480837.3036954-CDS-H-paniculata_contig17577:699..879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17577 700..879 -
1622929377.6080444-CDS-H-paniculata_contig17577:1221..13511622929377.6080444-CDS-H-paniculata_contig17577:1221..1351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17577 1222..1351 -
1691480837.3157825-CDS-H-paniculata_contig17577:1221..13511691480837.3157825-CDS-H-paniculata_contig17577:1221..1351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17577 1222..1351 -
1622929377.6260037-CDS-H-paniculata_contig17577:1922..20661622929377.6260037-CDS-H-paniculata_contig17577:1922..2066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17577 1923..2066 -
1691480837.326143-CDS-H-paniculata_contig17577:1922..20661691480837.326143-CDS-H-paniculata_contig17577:1922..2066Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17577 1923..2066 -
1622929377.6374314-CDS-H-paniculata_contig17577:3042..31461622929377.6374314-CDS-H-paniculata_contig17577:3042..3146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17577 3043..3146 -
1691480837.336731-CDS-H-paniculata_contig17577:3042..31461691480837.336731-CDS-H-paniculata_contig17577:3042..3146Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17577 3043..3146 -
1622929377.6520953-CDS-H-paniculata_contig17577:3551..36501622929377.6520953-CDS-H-paniculata_contig17577:3551..3650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17577 3552..3650 -
1691480837.353572-CDS-H-paniculata_contig17577:3551..36501691480837.353572-CDS-H-paniculata_contig17577:3551..3650Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17577 3552..3650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17577.4179.1

>prot_H-paniculata_contig17577.4179.1 ID=prot_H-paniculata_contig17577.4179.1|Name=mRNA_H-paniculata_contig17577.4179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
LRIHRYFARKKAPGQIDLRVKNVRFIGELVKFRVAPPVVAFQCLKTCLDD
FSSLSIQTMAALLDTCGRFLFRQTLTHQRMKNFLTVMMKLKKAKNLDPRP
EALVDNSFYTCCPPERQQRVAKVRTPLQSYIRHLMLEKLRDDPEVVERVI
KQLRKLPWQDPEVAVESEVLRASLRLCRNRYPNIHLAADVLSGLARYQDT
VAVKAVDAVLEAIRRGIEV
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mRNA from alignment at H-paniculata_contig17577:700..3650-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17577.4179.1 ID=mRNA_H-paniculata_contig17577.4179.1|Name=mRNA_H-paniculata_contig17577.4179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2951bp|location=Sequence derived from alignment at H-paniculata_contig17577:700..3650- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCGAATTCACAGATATTTCGCTCGCAAAAAGGCCCCAGGTCAGATCGA
CCTCCGCGTTAAGAATGTGCGCTTTATCGGAGAGCTGGTCAAGTTCAGGG
TAAGTGCCGCGGGGTCATGCTTGTGGTCTTCGGGTTGATGGTCATGTCAC
GCTTAGTTAACATCACAGGTGTTCGGGCCGGCCGATTTTTCGTATCTTAG
TTTAGCAGTCGGGCTGTTGTACAAATCCAAGTACCCTCCAGGCTGTGGTG
TCCAGCGTACGTCTAGGACTGTGTAGATAGCGAGAGATACACCATAGTTG
GATTTTTTCACGAATGTCATTTCATGTATATTCTGATGTATTTGTGAGAG
AGTGCACCACGGCTATGCCCCGAATATAGTTGGATCATCTCTAACAGCAT
GTTTGTGCTTTATGACATACACAGTCTGCTCCCTCGTCTTGTGTCATCCC
CTGTTTTAAGTCTCTTTTTCGCTCCCCCCCATCCTCGTATCCGCCATCTA
ACAGGTAGCGCCACCGGTGGTAGCGTTTCAGTGTCTCAAGACCTGCCTCG
ACGACTTCTCGTCGCTCTCTATCCAGACCATGGCGGCTCTCCTGGACACA
TGCGGCCGGTGAGGGCTTCGCTGATGACCCTAGCGATAAGTTGCAGAACA
GCTCTTCTAACAATAGCAGTATTTTCCAGCTGACTGTAGTAGTTGGGGCA
TGGCCATGCCAGTGTTTCTCTTTGAGTTTTTCGGCACACCCCGCCCCGCC
TTTTCAAACCTGTCACCCTGGAAGGGTGGTTTCGCCGAAGATTTGCTACG
CTCTCGCGTGCGTGCGTGCGTGCGTGCATGTGTGCTTGCCTCCTGAGCCC
TATAAAAATAAGGTTTTCGCGGCCATGGGTAATTCAATCTTGAATGATGA
ACCCTTCTGGGCACAACGTTTTCTTCCCCAAAGGTGGAGCGTTAACTATT
TTTTCCGGCCGAAAGTTCCATACGCCGACGAGTCAACCACTGCCTTTTGT
TCAAACCGGACGAATCAGCATCTACATGATCGCCTGTAATGTCATTTTCC
AGTATGCCACTCGGTATTGCCATTGAAAAATGGGCCCCCAACAGCAGATT
TCTGAAAATAGACTCTCGCGGTGTGAGCCCCGTAAGGGTCGAGGACACGT
GCTGACTTGTGAATTCCCGACGTCCCGCAAGTCTGGAATGTTGAGGATGT
AACTTTTTGAGATCGCCGCCGATTTAGAAATGGATCTTTGTGTTGAATTT
GGCTTGCGTGTTGTAATTGTTTTAGAGTCGCGACCATACTTTTTCGCGCT
CAACCTGCCCCATTACCTATCTATCTAATTCACGGCCGCGTCCGAAGCCT
CTCGGTCGGTTTGGACCTATTTTTGGCAGTTGCTTGGTTCTACCGGTTGC
TACCTTATTTGGTCAATCATTTTGTTTCCGTTGTCTTTACCGTTAGTCTG
TTACATATGTCAATCATGACTCTATCCGTACCGAACGTTGTTCTAATGTA
CCGGCGATCACCCCGTTGGATCGGACGTTAACCCGGCATACCGACTGCTG
CTTTTTTATAACCCCCCCGGCTCGCCTTCGACAGATTCCTCTTTCGGCAA
ACGCTAACCCATCAGCGTATGAAAAACTTCCTGACCGTGATGATGAAGCT
GAAAAAAGCGAAGAATCTCGACCCTCGGCCGGAGGCACTGGTCGATAATT
CCTTCTATACGTGCTGCCCTCCGGAAAGGTGCGGTGCTTCAATAGTGCGT
GCTGGTCGGCTTCGTAACAACCGTTAAACTCACGCCCCCCACCCCCCCCT
GCTGTACTGTATTGAGCGCTTTTTTCCGGGTGTTTTTTGCTGATTCGAGT
GTACACGAGTAACTGACATTTGAGATTCTGTAGCTATATATAGCTGTGGA
TAAGCTCAACGAGGGTACCATGAAAGTAATTATTGAAGCTCAATAGAGGT
GTAGAACTATAGAGCTACTCAACTATTGCGAGTGGGTCGGCTGTTGAACA
TGACTTGGTGGCTAAACGGAGATTTTGTTTGTTGGTCAGGGGTTCCCTGG
GTGCCCCTTTCTCCCCGCTACCCCCGGCCCTGCGTGTCGCCCACTTGGCA
GTCTATGTTTTTGTGATGAGTATTAGCCACGATCGTGGGCGATGGAACCT
CAGCATAGCATAGACTTGGACTATAATAGGCACCTTAGATTGAGGCAACT
CTGGAAGCATAATGCGGGTGTCACCCCCCCTCGCGAACCCGATGCCCCCC
CCCCCCCCCCCCTTGGTTCTGTGTGCCAATAATGTCCTCTTACATGCAGG
CAGCAGAGGGTGGCGAAGGTTCGGACCCCATTACAAAGTTACATCCGGCA
CCTCATGCTGGAAAAATTACGGGATGATCCTGAAGTGGTGGAACGGGTCA
TCAAGCAGCTGAGGAAGTTGCCATGGCAGGTGCATGAATACCCAGATGTT
AGCAGTATAGACTACCTGGGGTCGATGAGTCAGTGTAATGATCGAAGTTG
AAGAGGGAAGCGTTATGCATCAATAGGGTGATTATTCATAAAGTTTCCAT
TTTTTTATTTTTTTGTCAAATTGTCACTCGCCGCTGGGTAGCTGTGGCTT
GCCTCACTTTCTCGACCTATAGGTCTACTGATGTTTTAAAGGGTACATAC
TAACCCACCCGGGCTTCGTCACCAAGCCTATCCTAACCCTGCCCCGTCCT
ATCCTCCACCCTACCGTCCACTCTACCCCACCCTACGCTACCCTGCCCTA
ACTCGGCTGATGAAAATTCAGGACCCGGAGGTCGCCGTGGAGTCAGAGGT
GCTACGGGCGTCCCTACGTCTGTGCCGCAACCGCTACCCCAACATTCATC
TAGCGGCGGACGTTTTGTCTGGCTTGGCAAGGTACCAGGACACAGTAGCC
GTGAAGGCTGTGGATGCTGTGTTGGAAGCCATACGGCGGGGAATTGAGGT
A
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Coding sequence (CDS) from alignment at H-paniculata_contig17577:700..3650-

>mRNA_H-paniculata_contig17577.4179.1 ID=mRNA_H-paniculata_contig17577.4179.1|Name=mRNA_H-paniculata_contig17577.4179.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig17577:700..3650- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGCGAATTCACAGATATTTCGCTCGCAAAAAGGCCCCAGGTCAGATCGA
CCTCCGCGTTAAGAATGTGCGCTTTATCGGAGAGCTGGTCAAGTTCAGGT
TGCGAATTCACAGATATTTCGCTCGCAAAAAGGCCCCAGGTCAGATCGAC
CTCCGCGTTAAGAATGTGCGCTTTATCGGAGAGCTGGTCAAGTTCAGGGT
AGCGCCACCGGTGGTAGCGTTTCAGTGTCTCAAGACCTGCCTCGACGACT
TCTCGTCGCTCTCTATCCAGACCATGGCGGCTCTCCTGGACACATGCGGC
CGGTAGCGCCACCGGTGGTAGCGTTTCAGTGTCTCAAGACCTGCCTCGAC
GACTTCTCGTCGCTCTCTATCCAGACCATGGCGGCTCTCCTGGACACATG
CGGCCGATTCCTCTTTCGGCAAACGCTAACCCATCAGCGTATGAAAAACT
TCCTGACCGTGATGATGAAGCTGAAAAAAGCGAAGAATCTCGACCCTCGG
CCGGAGGCACTGGTCGATAATTCCTTCTATACGTGCTGCCCTCCGGAAAG
ATTCCTCTTTCGGCAAACGCTAACCCATCAGCGTATGAAAAACTTCCTGA
CCGTGATGATGAAGCTGAAAAAAGCGAAGAATCTCGACCCTCGGCCGGAG
GCACTGGTCGATAATTCCTTCTATACGTGCTGCCCTCCGGAAAGGCAGCA
GAGGGTGGCGAAGGTTCGGACCCCATTACAAAGTTACATCCGGCACCTCA
TGCTGGAAAAATTACGGGATGATCCTGAAGTGGTGGAACGGGTCATCAAG
CAGCTGAGGAAGTTGCCATGGCAGGCAGCAGAGGGTGGCGAAGGTTCGGA
CCCCATTACAAAGTTACATCCGGCACCTCATGCTGGAAAAATTACGGGAT
GATCCTGAAGTGGTGGAACGGGTCATCAAGCAGCTGAGGAAGTTGCCATG
GCAGGACCCGGAGGTCGCCGTGGAGTCAGAGGTGCTACGGGCGTCCCTAC
GTCTGTGCCGCAACCGCTACCCCAACATTCATCTAGCGGCGGACGTTTTG
TCTGGCTTGGCAAGGTACCAGGACACAGTAGCCGTGAAGGCTGTGGATGC
TGTGTTGGAAGCCATACGGCGGGGAATTGAGGTAGACCCGGAGGTCGCCG
TGGAGTCAGAGGTGCTACGGGCGTCCCTACGTCTGTGCCGCAACCGCTAC
CCCAACATTCATCTAGCGGCGGACGTTTTGTCTGGCTTGGCAAGGTACCA
GGACACAGTAGCCGTGAAGGCTGTGGATGCTGTGTTGGAAGCCATACGGC
GGGGAATTGAGGTA
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