prot_H-paniculata_contig17560.4172.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17560.4172.1
Unique Nameprot_H-paniculata_contig17560.4172.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length57
Homology
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: A0A8F0FD95_9PHAE (Cytochrome c oxidase subunit 1 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FD95_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 9.070e-25
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 0
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLGNNQLYN 52
            RWLFSTNHKDIGTAYI+FGGVSGI+GTGMS+ IRIQLMSPGN FLGNNQLYN
Sbjct:   18 RWLFSTNHKDIGTAYIIFGGVSGIIGTGMSIFIRIQLMSPGNTFLGNNQLYN 69          
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: A0A8D5NJG3_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=3 Tax=Chordariaceae TaxID=66220 RepID=A0A8D5NJG3_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 5.920e-21
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 0
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 52
            RWLFSTNHKDIGT Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   30 RWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYN 82          
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: A0A8F0K0Q8_9PHAE (Cytochrome c oxidase subunit 1 n=5 Tax=Laminariales TaxID=2886 RepID=A0A8F0K0Q8_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.640e-19
Identity = 39/53 (73.58%), Postives = 48/53 (90.57%), Query Frame = 0
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 52
            RWLFSTNHKDIGT Y++FGG SG++GT MS+++R+QLMSPGN FLG N+QLYN
Sbjct:   29 RWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVIVRLQLMSPGNQFLGGNHQLYN 81          
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: E6ZES6_ECTSI (Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES6_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 9.260e-19
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 0
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 52
            RWLFSTNHKDIGT Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   30 RWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYN 82          
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: A0A0S2I710_SACJA (Cytochrome c oxidase subunit 1 n=14 Tax=Saccharina japonica TaxID=88149 RepID=A0A0S2I710_SACJA)

HSP 1 Score: 87.4 bits (215), Expect = 9.290e-19
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 0
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 52
            RWLFSTNHKDIGT Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   29 RWLFSTNHKDIGTLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYN 81          
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: A0A2Z5XCH3_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=16 Tax=Chordariaceae TaxID=66220 RepID=A0A2Z5XCH3_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.060e-18
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 0
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 52
            RWLFSTNHKDIG+ Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   30 RWLFSTNHKDIGSLYLIFGGFSGVLGTAMSVLIRLQLASPGNQFLGGNHQLYN 82          
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: Q2TUB0_DICDH (Cytochrome c oxidase subunit 1 n=32 Tax=Phaeophyceae TaxID=2870 RepID=Q2TUB0_DICDH)

HSP 1 Score: 86.3 bits (212), Expect = 2.330e-18
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 0
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLGNN-QLYN 52
            RWLFSTNHKDIGT Y++FGG SG++GTGMS+LIR+QL SP N FL NN QLYN
Sbjct:   28 RWLFSTNHKDIGTLYLLFGGFSGVLGTGMSVLIRLQLASPSNQFLSNNHQLYN 80          
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: A0A5K7TLP3_9PHAE (Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A5K7TLP3_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 2.420e-18
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 0
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLG-NNQLYN 52
            RWLFSTNHKDIGT Y++FGG SG++GT MS+LIR+QL SPGN FLG N+QLYN
Sbjct:   34 RWLFSTNHKDIGTLYLIFGGFSGVLGTTMSVLIRLQLASPGNDFLGGNHQLYN 86          
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: A0A7S1BPC9_9STRA (Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BPC9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.160e-18
Identity = 36/53 (67.92%), Postives = 45/53 (84.91%), Query Frame = 0
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFL-GNNQLYN 52
            RWLFSTNHKDIGT Y++FG  SG+ GT +S+LIR++LM PGN+ L GN+QLYN
Sbjct:    6 RWLFSTNHKDIGTLYLIFGAFSGVAGTTLSVLIRMELMQPGNLILSGNHQLYN 58          
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Match: K9ZWM2_9STRA (Cytochrome c oxidase subunit 1 n=17 Tax=Ochrophyta TaxID=2696291 RepID=K9ZWM2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.350e-18
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0
Query:    1 RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFL-GNNQLYN 52
            RWLFSTNHKDIGT Y++FGGV+GI GT +S+LIR++L  PGN FL GNNQLYN
Sbjct:   20 RWLFSTNHKDIGTLYLIFGGVAGIAGTTLSVLIRLELAQPGNQFLSGNNQLYN 72          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17560.4172.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0FD95_9PHAE9.070e-2590.38Cytochrome c oxidase subunit 1 n=1 Tax=Protohalopt... [more]
A0A8D5NJG3_9PHAE5.920e-2175.47Cytochrome c oxidase subunit 1 (Fragment) n=3 Tax=... [more]
A0A8F0K0Q8_9PHAE3.640e-1973.58Cytochrome c oxidase subunit 1 n=5 Tax=Laminariale... [more]
E6ZES6_ECTSI9.260e-1975.47Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyc... [more]
A0A0S2I710_SACJA9.290e-1975.47Cytochrome c oxidase subunit 1 n=14 Tax=Saccharina... [more]
A0A2Z5XCH3_9PHAE1.060e-1873.58Cytochrome c oxidase subunit 1 (Fragment) n=16 Tax... [more]
Q2TUB0_DICDH2.330e-1875.47Cytochrome c oxidase subunit 1 n=32 Tax=Phaeophyce... [more]
A0A5K7TLP3_9PHAE2.420e-1875.47Cytochrome c oxidase subunit 1 n=55 Tax=Phaeophyce... [more]
A0A7S1BPC9_9STRA3.160e-1867.92Cytochrome c oxidase subunit 1 (Fragment) n=1 Tax=... [more]
K9ZWM2_9STRA4.350e-1873.58Cytochrome c oxidase subunit 1 n=17 Tax=Ochrophyta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036927Cytochrome c oxidase-like, subunit I superfamilyGENE3D1.20.210.10coord: 1..56
e-value: 5.9E-15
score: 56.6
IPR036927Cytochrome c oxidase-like, subunit I superfamilySUPERFAMILY81442Cytochrome c oxidase subunit I-likecoord: 1..52
IPR000883Cytochrome c oxidase subunit IPANTHERPTHR10422CYTOCHROME C OXIDASE SUBUNIT 1coord: 1..52
NoneNo IPR availablePANTHERPTHR10422:SF18CYTOCHROME C OXIDASE SUBUNIT 1coord: 1..52
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..57
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17560contigH-paniculata_contig17560:4688..4858 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17560.4172.1mRNA_H-paniculata_contig17560.4172.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17560 4688..4858 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17560.4172.1 ID=prot_H-paniculata_contig17560.4172.1|Name=mRNA_H-paniculata_contig17560.4172.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
RWLFSTNHKDIGTAYIVFGGVSGIVGTGMSMLIRIQLMSPGNVFLGNNQL
YNGAPSH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036927Cyt_c_oxase-like_su1_sf
IPR000883Cyt_C_Oxase_1