mRNA_H-paniculata_contig17483.4136.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17483.4136.1
Unique NamemRNA_H-paniculata_contig17483.4136.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17483.4136.1 vs. uniprot
Match: A0A177VID9_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VID9_9BASI)

HSP 1 Score: 112 bits (281), Expect = 2.920e-26
Identity = 61/154 (39.61%), Postives = 87/154 (56.49%), Query Frame = 1
Query:    1 VSTGTRPDIAYAIRQASGCMEDPSREDFSTCKRIFRYLGTMPDFGITFGGQSNGDGGEGFVDADWADKVEDRKSTTGYIFKLNGGAMRWCSRKQQLVTLSSTEVEYIAEGEAGKRRYILGGY*DR*VSGARGACHCLRTISQLSISVRDLVHTP 462
            ++ GTRPD+A+A+        DP+ E     KR+ RY+       +TFGG    D  EG+VDADWA   +DR+S +G++F + GGA+ W SRKQ  V LS+ E EY+A G AG+   +L G     V+ AR    C+ TI+  + +   LV  P
Sbjct:  123 LAQGTRPDLAFAVSTLGKFSSDPTEEHMIAAKRVLRYIRGTSGAKLTFGGSKGEDEVEGYVDADWAADRDDRRSMSGFVFTMAGGAVSWGSRKQGAVALSTAEAEYVAAGVAGREVLLLSGA----VAAARKELGCI-TINCDNQAAIQLVKNP 271          
BLAST of mRNA_H-paniculata_contig17483.4136.1 vs. uniprot
Match: A0A177UJU6_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia walkeri TaxID=117179 RepID=A0A177UJU6_9BASI)

HSP 1 Score: 115 bits (287), Expect = 3.930e-26
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 VSTGTRPDIAYAIRQASGCMEDPSREDFSTCKRIFRYLGTMPDFGITFGGQSNGDGGEGFVDADWADKVEDRKSTTGYIFKLNGGAMRWCSRKQQLVTLSSTEVEYIAEGEAGKRRYILGG 363
            ++ GTRPD+A+A+        DP+ E     KR+ RY+       +TFGG  + +G EG+VDADWA   +DR+ST+G+++ + GGA+ W SRKQ  V LS+ E EY+A G AG+   +L G
Sbjct:  494 LAQGTRPDLAFAVSTLGKFSSDPTEEHMEAAKRVLRYIRGTAGAKLTFGGDRSEEGVEGYVDADWAADRDDRRSTSGFVYTMAGGAVSWGSRKQGAVALSTAEAEYVAAGVAGREALLLSG 614          
BLAST of mRNA_H-paniculata_contig17483.4136.1 vs. uniprot
Match: A0A177UUN7_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177UUN7_9BASI)

HSP 1 Score: 115 bits (287), Expect = 4.460e-26
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 VSTGTRPDIAYAIRQASGCMEDPSREDFSTCKRIFRYLGTMPDFGITFGGQSNGDGGEGFVDADWADKVEDRKSTTGYIFKLNGGAMRWCSRKQQLVTLSSTEVEYIAEGEAGKRRYILGG 363
            ++ GTRPD+A+A+        DP+ E     KR+ RY+       +TFGG  + +G EG+VDADWA   +DR+ST+G+++ + GGA+ W SRKQ  V LS+ E EY+A G AG+   +L G
Sbjct: 1299 LAQGTRPDLAFAVSTLGKFSSDPTEEHMEAAKRVLRYIRGTTGAKLTFGGDRSEEGVEGYVDADWAADRDDRRSTSGFVYTMAGGAVSWGSRKQGAVALSTAEAEYVAAGVAGREALLLSG 1419          
BLAST of mRNA_H-paniculata_contig17483.4136.1 vs. uniprot
Match: A0A177T2L8_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Tilletia caries TaxID=13290 RepID=A0A177T2L8_9BASI)

HSP 1 Score: 114 bits (285), Expect = 4.640e-26
Identity = 52/121 (42.98%), Postives = 76/121 (62.81%), Query Frame = 1
Query:    1 VSTGTRPDIAYAIRQASGCMEDPSREDFSTCKRIFRYLGTMPDFGITFGGQSNGDGGEGFVDADWADKVEDRKSTTGYIFKLNGGAMRWCSRKQQLVTLSSTEVEYIAEGEAGKRRYILGG 363
            ++ GTRPD+A+A+        DP+ E     KR+ RY+       +TFGG  + +  EG+VDADWA   +DR+ST+G+++ + GGA+ W SRKQ  V LS+ E EY+A G AG+   +LGG
Sbjct:  300 LAQGTRPDLAFAVSTLGKFSSDPTEEHMEAAKRVLRYIRGTAGAKLTFGGDRSEEEVEGYVDADWAADRDDRRSTSGFVYTMAGGAVSWGSRKQGAVALSTAEAEYVAAGVAGREALLLGG 420          
BLAST of mRNA_H-paniculata_contig17483.4136.1 vs. uniprot
Match: A0A8B9AF53_PHODC (secreted RxLR effector protein 161-like n=1 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B9AF53_PHODC)

HSP 1 Score: 106 bits (264), Expect = 2.400e-25
Identity = 55/117 (47.01%), Postives = 72/117 (61.54%), Query Frame = 1
Query:   13 TRPDIAYAIRQASGCMEDPSREDFSTCKRIFRYLGTMPDFGITFGGQSNGDGGEGFVDADWADKVEDRKSTTGYIFKLNGGAMRWCSRKQQLVTLSSTEVEYIAEGEAGKRRYILGG 363
            TRPD+A+A+   S  M +P R+ +   K IFRYL +  D GI F  Q +     G+VDAD+A  ++DR+STTGY+F L GG + W S  Q LV LS+TE EY+A  EA K    L G
Sbjct:   51 TRPDLAHAVSAVSKFMANPGRQHWDAVKWIFRYLRSTTDHGIMFVRQQDDPSVVGYVDADYAGDLDDRRSTTGYVFTLAGGPISWRSMVQSLVALSTTESEYMAVAEAAKEALWLTG 167          
BLAST of mRNA_H-paniculata_contig17483.4136.1 vs. uniprot
Match: A0A177U9M6_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177U9M6_9BASI)

HSP 1 Score: 112 bits (279), Expect = 4.830e-25
Identity = 51/121 (42.15%), Postives = 75/121 (61.98%), Query Frame = 1
Query:    1 VSTGTRPDIAYAIRQASGCMEDPSREDFSTCKRIFRYLGTMPDFGITFGGQSNGDGGEGFVDADWADKVEDRKSTTGYIFKLNGGAMRWCSRKQQLVTLSSTEVEYIAEGEAGKRRYILGG 363
            ++ GTRPD+A+A+        DP+ E     KR+ RY+       +TFGG  + +  EG+VDADWA   +DR+ST+G+++ + GGA+ W SRKQ  V LS+ E EY+A G AG+   +L G
Sbjct:  620 LAQGTRPDLAFAVSTLGKFSSDPTEEHMEAAKRVLRYIRGTAGAKLTFGGDRSEEEVEGYVDADWAADRDDRRSTSGFVYTMAGGAVSWGSRKQGAVALSTAEAEYVAAGVAGREALLLSG 740          
BLAST of mRNA_H-paniculata_contig17483.4136.1 vs. uniprot
Match: A0A177T2R9_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177T2R9_9BASI)

HSP 1 Score: 108 bits (270), Expect = 5.410e-25
Identity = 53/122 (43.44%), Postives = 74/122 (60.66%), Query Frame = 1
Query:    1 VSTGTRPDIAYAIRQASGCMEDPSREDFSTCKRIFRYLGTMPDFGITFGGQSNGDGG-EGFVDADWADKVEDRKSTTGYIFKLNGGAMRWCSRKQQLVTLSSTEVEYIAEGEAGKRRYILGG 363
            ++ GTRPD+AYA+        DP+        R+ RYL       +TFGGQ +G+    GFVD+DWA   +DR+ST+G++F + GGA+ W SRKQ  V LS+ E EY+A G AG+   +L G
Sbjct:  113 LAQGTRPDLAYAVSTLGRFSSDPTETHRIAANRVLRYLKRTSGATLTFGGQKDGNVSLAGFVDSDWAADRDDRRSTSGFVFTVGGGAVSWGSRKQGAVALSTAEAEYVAAGVAGREALMLSG 234          
BLAST of mRNA_H-paniculata_contig17483.4136.1 vs. uniprot
Match: A0A177VUP4_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VUP4_9BASI)

HSP 1 Score: 110 bits (275), Expect = 5.580e-25
Identity = 54/122 (44.26%), Postives = 75/122 (61.48%), Query Frame = 1
Query:    1 VSTGTRPDIAYAIRQASGCMEDPSREDFSTCKRIFRYLGTMPDFGITFGGQSNGDGG-EGFVDADWADKVEDRKSTTGYIFKLNGGAMRWCSRKQQLVTLSSTEVEYIAEGEAGKRRYILGG 363
            ++ GTRPD+AYA+        DP+        R+ RYL       +TFGGQ +G+   EGFVD+DWA   +DR+ST+G++F + GGA+ W SRKQ  V LS+ E EY+A G AG+   +L G
Sbjct:  214 LAQGTRPDLAYAVSTLGRFSSDPTETHRVAANRVLRYLKRTSGAKLTFGGQKDGNISLEGFVDSDWAADRDDRRSTSGFVFTVGGGAVSWGSRKQGAVALSTAEAEYVAAGVAGRESLMLSG 335          
BLAST of mRNA_H-paniculata_contig17483.4136.1 vs. uniprot
Match: A0A2N9GS71_FAGSY (Uncharacterized protein n=3 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GS71_FAGSY)

HSP 1 Score: 107 bits (267), Expect = 8.540e-25
Identity = 54/117 (46.15%), Postives = 74/117 (63.25%), Query Frame = 1
Query:   13 TRPDIAYAIRQASGCMEDPSREDFSTCKRIFRYLGTMPDFGITFGGQSNGDGGEGFVDADWADKVEDRKSTTGYIFKLNGGAMRWCSRKQQLVTLSSTEVEYIAEGEAGKRRYILGG 363
            TRPD+A+A+   S  M +P RE ++  K IFRYL    + GI F  Q   +   G+VDAD+A +V+DR+STTGY+F L+GG + W S  Q +V +S+TE EY+A  EA K    L G
Sbjct:   79 TRPDLAHAVSTVSRYMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKG 195          
BLAST of mRNA_H-paniculata_contig17483.4136.1 vs. uniprot
Match: A0A2N9F5E5_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F5E5_FAGSY)

HSP 1 Score: 110 bits (276), Expect = 1.320e-24
Identity = 55/117 (47.01%), Postives = 75/117 (64.10%), Query Frame = 1
Query:   13 TRPDIAYAIRQASGCMEDPSREDFSTCKRIFRYLGTMPDFGITFGGQSNGDGGEGFVDADWADKVEDRKSTTGYIFKLNGGAMRWCSRKQQLVTLSSTEVEYIAEGEAGKRRYILGG 363
            TRPD+A+A+   S CM +P RE ++  K IFRYL    + GI F  Q   +   G+VDAD+A +V+DR+STTGY+F L+GG + W S  Q +V +S+TE EY+A  EA K    L G
Sbjct:  952 TRPDLAHAMSTVSRCMANPGREHWNAVKWIFRYLKGTAEHGILFSRQPGTNSVVGYVDADYAGEVDDRRSTTGYVFTLSGGPICWKSTLQSIVAMSTTEAEYMAVAEAAKEALWLKG 1068          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17483.4136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A177VID9_9BASI2.920e-2639.61Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177UJU6_9BASI3.930e-2642.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177UUN7_9BASI4.460e-2642.98Integrase catalytic domain-containing protein n=1 ... [more]
A0A177T2L8_9BASI4.640e-2642.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8B9AF53_PHODC2.400e-2547.01secreted RxLR effector protein 161-like n=1 Tax=Ph... [more]
A0A177U9M6_9BASI4.830e-2542.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177T2R9_9BASI5.410e-2543.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A177VUP4_9BASI5.580e-2544.26Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9GS71_FAGSY8.540e-2546.15Uncharacterized protein n=3 Tax=Fagus sylvatica Ta... [more]
A0A2N9F5E5_FAGSY1.320e-2447.01Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17483contigH-paniculata_contig17483:3564..4171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue5.5e-15
Seed eggNOG ortholog67593.Physo127720
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size608
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17483.4136.1prot_H-paniculata_contig17483.4136.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17483 3621..3932 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929372.8523781-UTR-H-paniculata_contig17483:3563..36201622929372.8523781-UTR-H-paniculata_contig17483:3563..3620Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17483 3564..3620 +
1691480835.2203577-UTR-H-paniculata_contig17483:3563..36201691480835.2203577-UTR-H-paniculata_contig17483:3563..3620Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17483 3564..3620 +
1622929372.8883598-UTR-H-paniculata_contig17483:3932..41711622929372.8883598-UTR-H-paniculata_contig17483:3932..4171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17483 3933..4171 +
1691480835.2425332-UTR-H-paniculata_contig17483:3932..41711691480835.2425332-UTR-H-paniculata_contig17483:3932..4171Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17483 3933..4171 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929372.8709214-CDS-H-paniculata_contig17483:3620..39321622929372.8709214-CDS-H-paniculata_contig17483:3620..3932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17483 3621..3932 +
1691480835.2331314-CDS-H-paniculata_contig17483:3620..39321691480835.2331314-CDS-H-paniculata_contig17483:3620..3932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17483 3621..3932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17483.4136.1

>prot_H-paniculata_contig17483.4136.1 ID=prot_H-paniculata_contig17483.4136.1|Name=mRNA_H-paniculata_contig17483.4136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MEDPSREDFSTCKRIFRYLGTMPDFGITFGGQSNGDGGEGFVDADWADKV
EDRKSTTGYIFKLNGGAMRWCSRKQQLVTLSSTEVEYIAEGEAGKRRYIL
GGY*
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mRNA from alignment at H-paniculata_contig17483:3564..4171+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17483.4136.1 ID=mRNA_H-paniculata_contig17483.4136.1|Name=mRNA_H-paniculata_contig17483.4136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=608bp|location=Sequence derived from alignment at H-paniculata_contig17483:3564..4171+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCTCAACAGGAACTCGGCCTGATATAGCATACGCGATACGCCAAGCATC AGGTTGTATGGAAGACCCATCCCGAGAAGACTTCAGTACATGCAAGCGCA TTTTTCGTTATCTCGGTACCATGCCTGACTTCGGGATTACGTTCGGCGGT CAGAGTAATGGCGACGGTGGGGAAGGATTCGTCGACGCCGATTGGGCAGA TAAGGTCGAGGACCGAAAGTCCACAACGGGATACATCTTCAAGCTGAACG GTGGTGCGATGCGTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTTGTCT AGTACAGAGGTAGAATACATTGCTGAAGGAGAAGCGGGAAAGAGACGATA TATCTTAGGGGGTTACTAGGATCGATAGGTTTCGGGTGCAAGGGGAGCAT GCCATTGTTTGAGGACAATAAGTCAGCTATCAATCTCAGTAAGGGATCTA GTGCACACTCCAGGACAAAGCACGTCGGAGTGCGCTGGCACGGAATTCGA GAGTGGATTCGGGAAGGAGTATTGGCATTGAAACACGTGCAGACCGGCGA TCAAGTTGCTGGCATTTTAACGAAAGGACTAAGCAGAATAAAGTTTCAGA GACTGAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17483:3564..4171+

>mRNA_H-paniculata_contig17483.4136.1 ID=mRNA_H-paniculata_contig17483.4136.1|Name=mRNA_H-paniculata_contig17483.4136.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig17483:3564..4171+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAAGACCCATCCCGAGAAGACTTCAGTACATGCAAGCGCATTTTTCG
TTATCTCGGTACCATGCCTGACTTCGGGATTACGTTCGGCGGTCAGAGTA
ATGGCGACGGTGGGGAAGGATTCGTCGACGCCGATTGGGCAGATAAGGTC
GAGGACCGAAAGTCCACAACGGGATACATCTTCAAGCTGAACGGTGGTGC
GATGCGTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTTGTCTAGTACAG
AGGTAGAATACATTGCTGAAGGAGAAGCGGGAAAGAGACGATATATCTTA
GGGGGTTACTAGATGGAAGACCCATCCCGAGAAGACTTCAGTACATGCAA
GCGCATTTTTCGTTATCTCGGTACCATGCCTGACTTCGGGATTACGTTCG
GCGGTCAGAGTAATGGCGACGGTGGGGAAGGATTCGTCGACGCCGATTGG
GCAGATAAGGTCGAGGACCGAAAGTCCACAACGGGATACATCTTCAAGCT
GAACGGTGGTGCGATGCGTTGGTGCTCTAGGAAGCAACAGTTAGTCACGT
TGTCTAGTACAGAGGTAGAATACATTGCTGAAGGAGAAGCGGGAAAGAGA
CGATATATCTTAGGGGGTTACTAG
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