mRNA_H-paniculata_contig1742.4116.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1742.4116.1
Unique NamemRNA_H-paniculata_contig1742.4116.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1742.4116.1 vs. uniprot
Match: D8LAW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW1_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.650e-18
Identity = 58/115 (50.43%), Postives = 66/115 (57.39%), Query Frame = 2 
Query:    2 ARLLHT-PGNMIYKEARLGRSGLGPSTASARAGYNATRPRSRAARVILPLTVTTAPSASVAERGEGMNRKKVVSAGDGKDVRGTDIHFVNSALGVQVMSNRTTSPSFTMAGPRRA 343
            +RLLHT P   +YKE RLGRSG GP+TAS RAG   TRPR  AARV+LP      P AS     E              +V    +  V+ ALG QV S R TSPSFT+AGPRRA
Sbjct:  237 SRLLHTTPAEALYKEDRLGRSGKGPTTASPRAGERLTRPRPIAARVVLP---KQGPRASAGGGSEXXXXXXXXXXXXXMEVAERGVIVVDGALGTQVKSRRPTSPSFTLAGPRRA 348
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1742.4116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAW1_ECTSI1.650e-1850.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1742contigH-paniculata_contig1742:9805..11219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_006220.1
Exons2
Model size349
Cds size321
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1742.4116.1prot_H-paniculata_contig1742.4116.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1742 9833..11219 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929369.8592331-UTR-H-paniculata_contig1742:9804..98321622929369.8592331-UTR-H-paniculata_contig1742:9804..9832Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1742 9805..9832 +
1691480833.792694-UTR-H-paniculata_contig1742:9804..98321691480833.792694-UTR-H-paniculata_contig1742:9804..9832Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1742 9805..9832 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929369.8722594-CDS-H-paniculata_contig1742:9832..98611622929369.8722594-CDS-H-paniculata_contig1742:9832..9861Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1742 9833..9861 +
1691480833.8026834-CDS-H-paniculata_contig1742:9832..98611691480833.8026834-CDS-H-paniculata_contig1742:9832..9861Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1742 9833..9861 +
1622929369.8887978-CDS-H-paniculata_contig1742:10927..112191622929369.8887978-CDS-H-paniculata_contig1742:10927..11219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1742 10928..11219 +
1691480833.8129704-CDS-H-paniculata_contig1742:10927..112191691480833.8129704-CDS-H-paniculata_contig1742:10927..11219Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1742 10928..11219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1742.4116.1

>prot_H-paniculata_contig1742.4116.1 ID=prot_H-paniculata_contig1742.4116.1|Name=mRNA_H-paniculata_contig1742.4116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MIYKEARLGRSGLGPSTASARAGYNATRPRSRAARVILPLTVTTAPSASV
AERGEGMNRKKVVSAGDGKDVRGTDIHFVNSALGVQVMSNRTTSPSFTMA
GPRRARE
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mRNA from alignment at H-paniculata_contig1742:9805..11219+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1742.4116.1 ID=mRNA_H-paniculata_contig1742.4116.1|Name=mRNA_H-paniculata_contig1742.4116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1415bp|location=Sequence derived from alignment at H-paniculata_contig1742:9805..11219+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCCGACTCTTGCATACGCCCGGAAATATGATTTACAAGGAGGCACGCT
TAGGAAGGTAAGCTGCTCAATATTTCAGCCCTTGTAGGAGGAGCGTCGGC
GCGGCCGGGGTACCCTTATTTTGACAGATTAATGCCTATCATAATTGGAG
GCACCGACCCTGCTCGTTAGGAAACCCAAAGATACAGCATAGATGGGGAA
GGGCGACGAGGAGGGAGGGATGGGAGGGCGGGGTCCCATCTCTGACCATC
TCCTATGTAGAACATGGGTGCCTTGCTGTTTGGACGTTCCCTATGCTTTG
TTGGCAATATAGGGTATTGGGACTTAGCTCGTTCAGATGGTAGCGCTAAA
GCGCATTGTCCGACTTGGTTTTATTGTTTTTGTTCGGCACGAACAAGGCA
TCATGCTCGAATTAAAAACAGTGCTAGGCTTTCGTTCGAGCCAGTGTGTC
TTACGCAGTCTACGTACCCTCGGTGACGAACTGTTCGGGCAAACTCGATT
TCACCAACCCTTTTTCATATCATGATGTCCACTGAAAAATATCGACGAGA
AAATTTCAACGAAACCACTATTGGCATCACGATCGCGGTAGGGCTCAAGA
GAATCAAGCCGTAAAAGATATATCACCAGCGGTGTTACAAACTATTAATC
ACTCTATTTATAGCCTTTTCCCAGTAAATAATGATCGTAGTTGAAATATT
TCACGTCGACCGGAAGGATGTATCAGCTAATCTCTATAGTAATGGTTGTG
GAAACGTTTGTGTTGCTTGTCCATCAATCACAGCTTGGTGTAGATACAGA
ACCTCGTGTACTACGTACCGGAGCAAGAGAGAAATCGGTTAACTGGTGAG
TGAAGGTTCGGAAGTCAGACTTCCCCGCTGTGCGCCCACGCGTGGCCATC
GGCGGTCGCTTCTGTAGAACCAATACTTCGTCCACTCTAGAACGCGTTGT
CAACGGTCTACCAGCTATGTAGTCGCCCTCGTTTTGGATCCGATGACTGA
GCGATATATTCAGTTAAGTTGTTCGAAATAGCTCAACATAAACAAATGAT
CTCCTATAACAGTACCGAAAAATTTCACGTTATCATTTCATGAGTATCCT
CCCCCTCCCGCCTCCCCTCGAAGGTCCGGACTAGGCCCGTCTACCGCCTC
TGCACGAGCCGGCTACAATGCCACAAGGCCGAGATCCCGCGCTGCGCGAG
TCATCCTTCCTCTTACGGTAACCACCGCGCCGTCAGCATCGGTGGCGGAG
AGGGGGGAGGGCATGAATAGGAAGAAAGTGGTGTCGGCAGGAGACGGAAA
GGATGTGCGAGGGACGGATATTCATTTTGTCAATAGTGCGCTTGGTGTCC
AGGTTATGTCGAACAGAACCACCAGTCCAAGTTTCACGATGGCGGGGCCG
AGGCGGGCGCGAGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1742:9805..11219+

>mRNA_H-paniculata_contig1742.4116.1 ID=mRNA_H-paniculata_contig1742.4116.1|Name=mRNA_H-paniculata_contig1742.4116.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig1742:9805..11219+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTTACAAGGAGGCACGCTTAGGAAGATGATTTACAAGGAGGCACGC
TTAGGAAGGTCCGGACTAGGCCCGTCTACCGCCTCTGCACGAGCCGGCTA
CAATGCCACAAGGCCGAGATCCCGCGCTGCGCGAGTCATCCTTCCTCTTA
CGGTAACCACCGCGCCGTCAGCATCGGTGGCGGAGAGGGGGGAGGGCATG
AATAGGAAGAAAGTGGTGTCGGCAGGAGACGGAAAGGATGTGCGAGGGAC
GGATATTCATTTTGTCAATAGTGCGCTTGGTGTCCAGGTTATGTCGAACA
GAACCACCAGTCCAAGTTTCACGATGGCGGGGCCGAGGCGGGCGCGAGAG
GTCCGGACTAGGCCCGTCTACCGCCTCTGCACGAGCCGGCTACAATGCCA
CAAGGCCGAGATCCCGCGCTGCGCGAGTCATCCTTCCTCTTACGGTAACC
ACCGCGCCGTCAGCATCGGTGGCGGAGAGGGGGGAGGGCATGAATAGGAA
GAAAGTGGTGTCGGCAGGAGACGGAAAGGATGTGCGAGGGACGGATATTC
ATTTTGTCAATAGTGCGCTTGGTGTCCAGGTTATGTCGAACAGAACCACC
AGTCCAAGTTTCACGATGGCGGGGCCGAGGCGGGCGCGAGAG
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