mRNA_H-paniculata_contig1740.4105.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1740.4105.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 167 bits (422), Expect = 1.370e-47 Identity = 88/212 (41.51%), Postives = 135/212 (63.68%), Query Frame = 1
Query: 1 PYKKAVEVLMWTVTIKRPDIANIVRSTAKFWENPGVVHKKAVEKILPFVLRTANLGITYG-GKDSGIEMLAYADSDHATCPDTRRSVSRGAVLLAGGAISWHSRTQEITASTSSELEYVTLAETLKYVRCPRQMEAFIMPTLESYSVTVMEDNQGGIKMA----NSKRTGHIDVKHHVVRNAVDEGKVTIVYVETGSQHADVLTKGLEKNTF 621
P+++ + LMW T RPDIAN VR+ A++ +P +H +A IL +V+RT++LGIT+ G +G+ M +AD+D+A+ RRSVS G V+ GG +SW SRTQ+ +++E EYV+LA+ +K V RQ+ F++P + V+EDNQG I++A ++ + HIDV+HH +R V +++I +VE+ QHAD LTK L F
Sbjct: 32 PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVRRFVLPEAGMPCIPVLEDNQGAIQLAQNPISNSTSKHIDVRHHFIRELVRRKEISIFHVESAYQHADFLTKALNAGDF 243
BLAST of mRNA_H-paniculata_contig1740.4105.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 164 bits (415), Expect = 3.720e-46 Identity = 90/218 (41.28%), Postives = 134/218 (61.47%), Query Frame = 1
Query: 1 PYKKAVEVLMWTVTIKRPDIANIVRSTAKFWENPGVVHKKAVEKILPFVLRTANLGITYG-GKDSGIEMLAYADSDHATCPDTRRSVSRGAVLLAGGAISWHSRTQEITASTSSELEYVTLAETLKYVRCPRQMEAFIMPTLESYSVTVMEDNQGGIKMANSKRTG----HIDVKHHVVRNAVDEGKVTIVYVETGSQHADVLTKGLEKNTFLGNDSF 639
P+++ V LMW T RPDIAN VR+ A++ +P +VH KA IL +V RT+ +GIT+ G +G+ M + D+D+A+ RRSVS G V+ GG ++W SRTQ+ +++E EYV +A+ LK V RQ+ F++P + V EDNQG I++A++ T HIDV+HH +R V+ +++I V T QHAD LTK + K +F + F
Sbjct: 99 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESFALHRDF 316
BLAST of mRNA_H-paniculata_contig1740.4105.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 164 bits (416), Expect = 9.880e-46 Identity = 89/218 (40.83%), Postives = 134/218 (61.47%), Query Frame = 1
Query: 1 PYKKAVEVLMWTVTIKRPDIANIVRSTAKFWENPGVVHKKAVEKILPFVLRTANLGITYG-GKDSGIEMLAYADSDHATCPDTRRSVSRGAVLLAGGAISWHSRTQEITASTSSELEYVTLAETLKYVRCPRQMEAFIMPTLESYSVTVMEDNQGGIKMANSKRTG----HIDVKHHVVRNAVDEGKVTIVYVETGSQHADVLTKGLEKNTFLGNDSF 639
P+++ V LMW T RPDIAN VR+ A++ +P +VH KA IL +V RT+ +GIT+ G +G+ M + D+D+A+ RRSVS G V+ GG ++W SRTQ+ +++E EYV +A+ LK V RQ+ F++P + V EDNQG I++ ++ T HIDV+HH +R V+ +++I +V T QHAD LTK + K +F + F
Sbjct: 154 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQIMHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTQFQHADFLTKAISKESFALHRDF 371
BLAST of mRNA_H-paniculata_contig1740.4105.1 vs. uniprot
Match: A0A6H5JLN0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLN0_9PHAE) HSP 1 Score: 164 bits (416), Expect = 3.680e-45 Identity = 88/212 (41.51%), Postives = 133/212 (62.74%), Query Frame = 1
Query: 1 PYKKAVEVLMWTVTIKRPDIANIVRSTAKFWENPGVVHKKAVEKILPFVLRTANLGITYG-GKDSGIEMLAYADSDHATCPDTRRSVSRGAVLLAGGAISWHSRTQEITASTSSELEYVTLAETLKYVRCPRQMEAFIMPTLESYSVTVMEDNQGGIKMA----NSKRTGHIDVKHHVVRNAVDEGKVTIVYVETGSQHADVLTKGLEKNTF 621
P+++ + LMW T RPDIAN VR+ A++ +P +H +A IL +V+RT++LGIT+ G +G+ M + D+D+A+ RRSVS G V+ GG ISW SRTQ+ +++E EYV+LA+ +K V RQ+ F++P + V EDNQG I++A ++ + HIDV+HH +R V +++I +VE+ QHAD LTK L F
Sbjct: 216 PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 427
BLAST of mRNA_H-paniculata_contig1740.4105.1 vs. uniprot
Match: A0A6H5KD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD60_9PHAE) HSP 1 Score: 160 bits (404), Expect = 8.650e-45 Identity = 87/218 (39.91%), Postives = 134/218 (61.47%), Query Frame = 1
Query: 1 PYKKAVEVLMWTVTIKRPDIANIVRSTAKFWENPGVVHKKAVEKILPFVLRTANLGITYG-GKDSGIEMLAYADSDHATCPDTRRSVSRGAVLLAGGAISWHSRTQEITASTSSELEYVTLAETLKYVRCPRQMEAFIMPTLESYSVTVMEDNQGGIKMA----NSKRTGHIDVKHHVVRNAVDEGKVTIVYVETGSQHADVLTKGLEKNTFLGNDSF 639
P+++ + LMW T RP+IAN R+ A++ +P +H +A IL +V+RT++LGIT+G G +G+ M +AD+D+A+ RRSVS G V+ G ISW SRTQ+ +++E EYV+LA+ +K V RQ+ F++P + V EDNQG I++A ++ + H DV+HH + V +++I YVE+ QHAD LTK L F + +F
Sbjct: 71 PFRELIGSLMWLATQTRPNIANAARAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFGRGSVAGLSMEVFADADYASKAADRRSVSGGFVMCGRGCISWFSRTQQCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHFDVRHHFIGELVGRKEISIFYVESAYQHADFLTKALHFGDFEFHRNF 288
BLAST of mRNA_H-paniculata_contig1740.4105.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 163 bits (412), Expect = 1.420e-44 Identity = 88/211 (41.71%), Postives = 132/211 (62.56%), Query Frame = 1
Query: 1 PYKKAVEVLMWTVTIKRPDIANIVRSTAKFWENPGVVHKKAVEKILPFVLRTANLGITYG-GKDSGIEMLAYADSDHATCPDTRRSVSRGAVLLAGGAISWHSRTQEITASTSSELEYVTLAETLKYVRCPRQMEAFIMPTLESYSVTVMEDNQGGIKMANSKRTG----HIDVKHHVVRNAVDEGKVTIVYVETGSQHADVLTKGLEKNT 618
P+++ V LMW T RPDIAN VR+ A++ +P +VH KA IL +V RT+ +GIT+ G +G+ M + D+D+A+ RRSVS G V+ GG ++W SRTQ+ +++E EYV +A+ LK V RQ+ F++P + V EDNQG I++A++ T HIDV+HH +R V+ +++I +V T QHAD LTK + K +
Sbjct: 216 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKES 426
BLAST of mRNA_H-paniculata_contig1740.4105.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE) HSP 1 Score: 159 bits (403), Expect = 1.880e-44 Identity = 88/220 (40.00%), Postives = 136/220 (61.82%), Query Frame = 1
Query: 1 PYKKAVEVLMWTVTIKRPDIANIVRSTAKFWENPGVVHKKAVEKILPFVLRTANLGITYG-GKDSGIEMLAYADSDHATCPDTRRSVSRGAVLLAGGAISWHSRTQEITASTSSELEYVTLAETLKYVRCPRQMEAFIMPTLESYSVTVMEDNQGGIKMANSKRTG----HIDVKHHVVRNAVDEGKVTIVYVETGSQHADVLTKGLEKNTF-LGNDSFS 642
P+++ V +MW T RPDIAN VR+ A++ +P +VH KA IL +V RT+ +GIT+ G +G+ M + D+D+ RRSVS G V+ GG ++W SRTQ+ +++E EYV +A+ LK V RQ+ F++P + V EDNQG I++A++ T HID +HH++R V+ +++I +V + QHAD LTK + K +F L +D F+
Sbjct: 71 PFRELVGSVMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYVRKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTKAISKESFALLHDEFA 290
BLAST of mRNA_H-paniculata_contig1740.4105.1 vs. uniprot
Match: A0A6H5K2P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P8_9PHAE) HSP 1 Score: 159 bits (401), Expect = 5.430e-44 Identity = 89/218 (40.83%), Postives = 129/218 (59.17%), Query Frame = 1
Query: 1 PYKKAVEVLMWTVTIKRPDIANIVRSTAKFWENPGVVHKKAVEKILPFVLRTANLGITY-GGKDSGIEMLAYADSDHATCPDTRRSVSRGAVLLAGGAISWHSRTQEITASTSSELEYVTLAETLKYVRCPRQMEAFIMPTLESYSVTVMEDNQGGIKMANS----KRTGHIDVKHHVVRNAVDEGKVTIVYVETGSQHADVLTKGLEKNTFLGNDSF 639
P+++ V LMW T RPDIA+ R+ A++ +P +VH KA IL +V RT+ +GIT+ GG +G+ M + D+D+A+ RRSVS G V+ G ++W SRTQ+ +++E EYV +A+ LK V RQ+ FI+P + V EDNQG I+ A++ HIDV HH +R V+ +TI +V T QHAD LTK K +F + F
Sbjct: 106 PFRELVGSLMWLATQTRPDIADAARAVARYCPSPKMVHWKAALGILGYVRRTSWMGITFEGGVVTGMSMQVFVDADYASKAADRRSVSGGLVMCVWGGVTWFSRTQKSVTLSTTEAEYVAIADVLKEVLFLRQVWRFILPDASMPCIPVFEDNQGAIQNAHNPIINSNLKHIDVMHHFIRELVERKDITITHVPTQVQHADFLTKASSKQSFALHRDF 323
BLAST of mRNA_H-paniculata_contig1740.4105.1 vs. uniprot
Match: A0A6H5KQB8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB8_9PHAE) HSP 1 Score: 164 bits (416), Expect = 5.480e-44 Identity = 88/212 (41.51%), Postives = 133/212 (62.74%), Query Frame = 1
Query: 1 PYKKAVEVLMWTVTIKRPDIANIVRSTAKFWENPGVVHKKAVEKILPFVLRTANLGITYG-GKDSGIEMLAYADSDHATCPDTRRSVSRGAVLLAGGAISWHSRTQEITASTSSELEYVTLAETLKYVRCPRQMEAFIMPTLESYSVTVMEDNQGGIKMA----NSKRTGHIDVKHHVVRNAVDEGKVTIVYVETGSQHADVLTKGLEKNTF 621
P+++ + LMW T RPDIAN VR+ A++ +P +H +A IL +V+RT++LGIT+ G +G+ M + D+D+A+ RRSVS G V+ GG ISW SRTQ+ +++E EYV+LA+ +K V RQ+ F++P + V EDNQG I++A ++ + HIDV+HH +R V +++I +VE+ QHAD LTK L F
Sbjct: 390 PFRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFVDADYASKAADRRSVSGGLVMCGGGCISWFSRTQKCVTLSTTEAEYVSLADVMKEVLFLRQVWRFMLPEAGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFIRELVGRKEISIFHVESAYQHADFLTKALHAGDF 601
BLAST of mRNA_H-paniculata_contig1740.4105.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE) HSP 1 Score: 160 bits (404), Expect = 1.040e-43 Identity = 86/212 (40.57%), Postives = 133/212 (62.74%), Query Frame = 1
Query: 1 PYKKAVEVLMWTVTIKRPDIANIVRSTAKFWENPGVVHKKAVEKILPFVLRTANLGITYG-GKDSGIEMLAYADSDHATCPDTRRSVSRGAVLLAGGAISWHSRTQEITASTSSELEYVTLAETLKYVRCPRQMEAFIMPTLESYSVTVMEDNQGGIKMANSKRTG----HIDVKHHVVRNAVDEGKVTIVYVETGSQHADVLTKGLEKNTF 621
P+++ V LMW T RPDIAN VR+ A++ +P +VH KA IL +V RT+ +GIT+ G +G+ M + D+D+A+ RRSVS G V+ GG ++W SRTQ+ +++E+EYV +A+ LK V RQ+ ++ + + V EDNQG I++A++ T HIDV+HH +R V+ +++I +V + QHAD LTK + K +F
Sbjct: 152 PFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADNASKAADRRSVSGGVVMCGGGGVTWFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 363 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1740.4105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1740.4105.1 >prot_H-paniculata_contig1740.4105.1 ID=prot_H-paniculata_contig1740.4105.1|Name=mRNA_H-paniculata_contig1740.4105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=207bp MWTVTIKRPDIANIVRSTAKFWENPGVVHKKAVEKILPFVLRTANLGITYback to top mRNA from alignment at H-paniculata_contig1740:5798..6445- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1740.4105.1 ID=mRNA_H-paniculata_contig1740.4105.1|Name=mRNA_H-paniculata_contig1740.4105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=648bp|location=Sequence derived from alignment at H-paniculata_contig1740:5798..6445- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1740:5798..6445- >mRNA_H-paniculata_contig1740.4105.1 ID=mRNA_H-paniculata_contig1740.4105.1|Name=mRNA_H-paniculata_contig1740.4105.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1242bp|location=Sequence derived from alignment at H-paniculata_contig1740:5798..6445- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |