mRNA_H-paniculata_contig10630.410.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig10630.410.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE) HSP 1 Score: 109 bits (273), Expect = 5.310e-23 Identity = 80/226 (35.40%), Postives = 122/226 (53.98%), Query Frame = 2 Query: 2 ALVFTRFSLILLQSTLAYNSWRKYTASTAMVSYVCVLVFSTIKIMICYVAEVFPSMDAINENSLFQLKMSKRFGRRARRFSSEGLSRKQPLAPPSGSNV----ID------SAATQIQTLVRMTEARKRTVRQEEVLNWSQPEVRKSRQKLSNMVYLWFGLYLGTVTWVTLCYVLTYDTVTIWSWVTATAWTISIDVVLRKPLTVLGNATLHTIQERVRKPEKTHI 649
++VF R + LQ LA++ R +STA+ Y + S I + E+ P MDA+N+ + Q+ M+K + R P S +V ID +AA +IQTLVRM +AR+R VR++EV+ W P VR R++L+ Y ++ +V W+ LCYV YD I +W+ AT + +D+VLRKPL+VL AT++TI++ R P +I
Sbjct: 681 SIVFARIVVTALQVVLAFHGMRNAASSTAL--YGTLFALSIAMIFGSHKNELMPCMDAVNQRYMSQISMAKMY-------------RPPPKVDHSHQHVSSWTIDLCILRNTAAVKIQTLVRMYQARQRAVRRQEVVAWQSPHVRSMRKRLTFRAYTCLIVFTASVAWINLCYVALYDGPAIRNWIAATGIAVLVDIVLRKPLSVLVVATVNTIRDSARVPGTVYI 891 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10630.410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10630.410.1 >prot_H-paniculata_contig10630.410.1 ID=prot_H-paniculata_contig10630.410.1|Name=mRNA_H-paniculata_contig10630.410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp MVSYVCVLVFSTIKIMICYVAEVFPSMDAINENSLFQLKMSKRFGRRARRback to top mRNA from alignment at H-paniculata_contig10630:1062..4503- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10630.410.1 ID=mRNA_H-paniculata_contig10630.410.1|Name=mRNA_H-paniculata_contig10630.410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3442bp|location=Sequence derived from alignment at H-paniculata_contig10630:1062..4503- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10630:1062..4503- >mRNA_H-paniculata_contig10630.410.1 ID=mRNA_H-paniculata_contig10630.410.1|Name=mRNA_H-paniculata_contig10630.410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig10630:1062..4503- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |