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Homology
BLAST of mRNA_H-paniculata_contig10630.410.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE) HSP 1 Score: 109 bits (273), Expect = 5.310e-23 Identity = 80/226 (35.40%), Postives = 122/226 (53.98%), Query Frame = 2
Query: 2 ALVFTRFSLILLQSTLAYNSWRKYTASTAMVSYVCVLVFSTIKIMICYVAEVFPSMDAINENSLFQLKMSKRFGRRARRFSSEGLSRKQPLAPPSGSNV----ID------SAATQIQTLVRMTEARKRTVRQEEVLNWSQPEVRKSRQKLSNMVYLWFGLYLGTVTWVTLCYVLTYDTVTIWSWVTATAWTISIDVVLRKPLTVLGNATLHTIQERVRKPEKTHI 649
++VF R + LQ LA++ R +STA+ Y + S I + E+ P MDA+N+ + Q+ M+K + R P S +V ID +AA +IQTLVRM +AR+R VR++EV+ W P VR R++L+ Y ++ +V W+ LCYV YD I +W+ AT + +D+VLRKPL+VL AT++TI++ R P +I
Sbjct: 681 SIVFARIVVTALQVVLAFHGMRNAASSTAL--YGTLFALSIAMIFGSHKNELMPCMDAVNQRYMSQISMAKMY-------------RPPPKVDHSHQHVSSWTIDLCILRNTAAVKIQTLVRMYQARQRAVRRQEVVAWQSPHVRSMRKRLTFRAYTCLIVFTASVAWINLCYVALYDGPAIRNWIAATGIAVLVDIVLRKPLSVLVVATVNTIRDSARVPGTVYI 891
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 69.7 |
| Seed ortholog evalue | 1.7e-09 |
| Seed eggNOG ortholog | 2880.D7G4X3 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | detection of mechanical stimulus |
| EggNOG OGs | KOG3599@1,KOG3599@2759 |
| COG Functional cat. | E |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 5 |
| Model size | 924 |
| Cds size | 576 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10630.410.1 >prot_H-paniculata_contig10630.410.1 ID=prot_H-paniculata_contig10630.410.1|Name=mRNA_H-paniculata_contig10630.410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=192bp
MVSYVCVLVFSTIKIMICYVAEVFPSMDAINENSLFQLKMSKRFGRRARR
FSSEGLSRKQPLAPPSGSNVIDSAATQIQTLVRMTEARKRTVRQEEVLNW
SQPEVRKSRQKLSNMVYLWFGLYLGTVTWVTLCYVLTYDTVTIWSWVTAT
AWTISIDVVLRKPLTVLGNATLHTIQERVRKPEKTHIEESI* back to topmRNA from alignment at H-paniculata_contig10630:1062..4503- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10630.410.1 ID=mRNA_H-paniculata_contig10630.410.1|Name=mRNA_H-paniculata_contig10630.410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3442bp|location=Sequence derived from alignment at H-paniculata_contig10630:1062..4503- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGTTGGTTTTCACAAGATTCTCCCTAATACTCCTCCAATCTACACTGG
CCTACAACAGCTGGAGGAAGTATACGGCGTCAACGGCCATGGTCTCATAC
GTTTGTGTTCTCGTCTTTTCCACAATCAAGATTATGATATGCTATGTGGT
GCGTGCTTCTGCAAGTCGATGCAAGTCATGCATTTTGCCACCCAAAGCAT
TTTCTGTCAGTTTATGAATAGCGGTCTTTCTGGTACTACTCAGCGTTTCT
GCAGCAGCAGCAATAAAAATAAACACGCGGCTAGTACTTGTACATAAACC
CTGATCAACAATATTCAACACCCTCTTTGTCTCTGCGACTGTGCTGGTAG
GCCGAGGTGTTTCCCAGTATGGATGCGATCAACGAGAATTCGTTATTCCA
GGTGCGTTGGTATATGTCCATTGCTTCTCGAGCAAGGTCAAGCGATTCTG
TGGTCTATTGCAGGGGAATACGGCAGGTCCCCTCGATACGTCACCGCGGT
TTAGAGAACATACACACACACGCGCGCGCACACACACACACACACATACA
TATTGACTCGGCGACAAATGAGCAAGCGTCGATAAGGGTCGATTTAATGT
ACGCCGTGACACTAGCTTTTTGCTTATTTCATTATTTTGCCGGTAATCAC
CAATACAGAGATAAGGAGAAGAGAGAATTGCCTGGAAATCTCGGAAGGTG
ATATTCGATCACTCCTGGGCTCCTGAAGTTTATCGATGTCTGGACACACA
AAGAGGATTGTATATGACTTCTTCACTACAGGTCCTGTTTTGGGAAGCGG
ATGCGAGTGGTTGTGTGTGGGGCTTCACCCTCCAGCAAAACGGGGCTGCT
GCAGCCAACAACTTAGACGGTCATAATCCAGAATCTAAACCAGACAATGA
CCAATACAACAACACACCATCTACATACAACGGCCAAATTCTGTACAACA
AAACTCTCCGCCAATACCCGTAGAACAGTTGCCTCACTGTCATTATGATC
ACCTTGACTACAACGACGCGAGCAATACACCACCTTTTTCTTCTCCCAAA
TGTCCAGCTGAAAATGAGCAAAAGGTTCGGTCGGAGGGCGCGGAGGTTTT
CAAGTGAGGGACTGTCACGGAAGCAGCCCCTTGCACCACCTTCTGGGTCG
AATGTAATTGATTCAGCAGCTACCCAGATCCAGACTCTCGTGCGCATGAC
GGAAGCTCGCAAGAGGTGGGCACTGTAGTTGAGAATTGTAGACCTCCTGG
AAGGTAAAGTATTCGACGGCTCCGACGAATGCAAATGACACACAATACTG
AAGTTTCTGCGGTTCGTTGAAAATTCGAGTTGCACTATCCCCTATTTTTG
TGCAATCTAGAGGTGATGCAGCCGTGAGCGAGTCGGTTATCTCTCTTCAA
ATGCCCATGAAGCAGTTGGCTGAAGCGACAGACTTACCGAAAGCTAATGC
CGTGTCCTCGTTTGCGCGGTCACTCCTTTTATATTTTGTGTCTCGGCATC
TCTCCACGAAGGACTGTTCGACAGGAGGAGGTGCTGAACTGGTCTCAACC
CGAAGTTCGCAAAAGTCGCCAAAAACTAAGCAACATGGTCTACTTGTGGT
TCGGACTATACTTGGGCACGGTTACATGGGTCACCCTCTGTTATGTGTTG
ACGTATGACACCGTAACCATCTGGTGCGTGGTTCAGTCACATTTGTATAC
CGTGCATGCACCATACGTTTCTTCGGAGTAAACCAAAAAATGTATATATG
GCAGCCTCATTTATCAAACAACAGTTAAAAGTGTGCACTACTGTAGAAGT
TAAGACGACTCTTTTCTTTGGGATGAAAACAGTTTAGTCAGAATTTGCGC
AATATATCCCACCCCCAAATCCTAATGAGCTTAAAATAATATTTTCTTCT
GTAGGGATAGAACGGGTTTACTTTCGATACAATTGGGATCACTGAATCTT
GAGATACAGGGCAAAATAGCAAGATCAAGGGGAATCGTGAATGGCTACTA
GGTTTTTGCTTGGAATGCCCATTTCTTGGGAGCAGAGAACCCAACACAAA
AATTACACCATCCAACGAATGCCGATGCCATGCACTTTCACCGACTCTCT
TCGAGTCATGCTTGATTCGGCACGTAGTATAGGGAAAATCGTGAAAACAT
CCTATAGAAAAAAGCCATCGTAAACTTCTAGTACACACTGTTACAGAGAG
CCACACCATTTAATGTAACAGCATATTGGTGAAATGGGGACCCAACTTTG
ATTGATCTTCAGGAAACAGCCTATTTCCAATATAACCCAGCGTCCCCATG
TCAAAGTTGGGTCCCCATTTCACCAATATGCTGTTATGTGTACTAGAAGA
AGTGAGCGGTAACGGCGCAGCTAGTGGTACCTTTTGACTTTCAGAGTATA
CAGATAGCGACACCATTTGACTTTTCTTCAATCATCTCCCACACACCACA
ACATCTTCTATTCGTGATGATTCACATTTTCATGAAACGATACGCGTTAG
GACGGCGGGCATCAAAGTACATTCATGTTACCCCTTTCAAACGACTCCCC
TACCGTTCGGTCAACAGTAGCACTGTGCCGCAGCCGGAACAACCACTCAC
TCAAGCTTCAAGGTTGAAACATTACGTAGTCGATTTCTAATTATTATTTC
CGCCTTGAAGTGAGCAGCACAATTTCTTAGCTGTAATTGCTTGATTAAAA
CAAATCCAGCCTAAATTTCTTAACTGCCAATTTCTTAAGTGGTGTCACTA
TCTGTAGTTGTTGCACGCACCAGTAGGTTTAATCGCACATTGTTATTCTA
CACCGGCCTTAACAAAATGCATCTGAAGAAGGACGCTTCACGCGAATGCC
GGAAGAACAAAAAATCGAATGGCATTAGGTTGGTTTGCAGTCGACAATGA
GTTCGTGGTCCGCTTTGACCATAACGCGCAGCAATAACAAAGTTTCGTGC
CAAGCTGTACATCCGACACGAACAGACTCGCGCGCAATGCTTCGCATCGC
TATGTAGGACCGACTTTATTCCTCTCTCCTACGACAGGTCATGGGTGACA
GCAACCGCTTGGACCATCTCCATCGACGTTGTGCTCAGGAAACCGTTGAC
AGTCCTAGGTAACGCTACACTGCACACGATCCAGGAGCGGGTCCGCAAAC
CAGAGAAGACGCATATCGAGGAGAGCATTTAAGAATTGATCCCTCCCGCA
CGTTGGTCACACAGATCTTGATATGTATATATACATACTCTGGTAACGCC
CGACCCCAGTCGTGTGGAAGCTGCTTTGCTTGATGAAAAATGGACTAAAT
ATGTATGGTAAGCGATGGCGTCTAATACTATACAGATTCCCTCAGCAGCA
CGGATTTCTCGCAAAAAGTTCGTAAGCAATGTCAACATCGACTTCAGACA
GGCGGATATATTGTTGAAATAATTCAGCTAACTGTGTGTGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig10630:1062..4503- >mRNA_H-paniculata_contig10630.410.1 ID=mRNA_H-paniculata_contig10630.410.1|Name=mRNA_H-paniculata_contig10630.410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at H-paniculata_contig10630:1062..4503- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCTCATACGTTTGTGTTCTCGTCTTTTCCACAATCAAGATTATGAT
ATGCTATGTGATGGTCTCATACGTTTGTGTTCTCGTCTTTTCCACAATCA
AGATTATGATATGCTATGTGGCCGAGGTGTTTCCCAGTATGGATGCGATC
AACGAGAATTCGTTATTCCAGGCCGAGGTGTTTCCCAGTATGGATGCGAT
CAACGAGAATTCGTTATTCCAGCTGAAAATGAGCAAAAGGTTCGGTCGGA
GGGCGCGGAGGTTTTCAAGTGAGGGACTGTCACGGAAGCAGCCCCTTGCA
CCACCTTCTGGGTCGAATGTAATTGATTCAGCAGCTACCCAGATCCAGAC
TCTCGTGCGCATGACGGAAGCTCGCAAGAGCTGAAAATGAGCAAAAGGTT
CGGTCGGAGGGCGCGGAGGTTTTCAAGTGAGGGACTGTCACGGAAGCAGC
CCCTTGCACCACCTTCTGGGTCGAATGTAATTGATTCAGCAGCTACCCAG
ATCCAGACTCTCGTGCGCATGACGGAAGCTCGCAAGAGGACTGTTCGACA
GGAGGAGGTGCTGAACTGGTCTCAACCCGAAGTTCGCAAAAGTCGCCAAA
AACTAAGCAACATGGTCTACTTGTGGTTCGGACTATACTTGGGCACGGTT
ACATGGGTCACCCTCTGTTATGTGTTGACGTATGACACCGTAACCATCTG
GACTGTTCGACAGGAGGAGGTGCTGAACTGGTCTCAACCCGAAGTTCGCA
AAAGTCGCCAAAAACTAAGCAACATGGTCTACTTGTGGTTCGGACTATAC
TTGGGCACGGTTACATGGGTCACCCTCTGTTATGTGTTGACGTATGACAC
CGTAACCATCTGGTCATGGGTGACAGCAACCGCTTGGACCATCTCCATCG
ACGTTGTGCTCAGGAAACCGTTGACAGTCCTAGGTAACGCTACACTGCAC
ACGATCCAGGAGCGGGTCCGCAAACCAGAGAAGACGCATATCGAGGAGAG
CATTTAAGTCATGGGTGACAGCAACCGCTTGGACCATCTCCATCGACGTT
GTGCTCAGGAAACCGTTGACAGTCCTAGGTAACGCTACACTGCACACGAT
CCAGGAGCGGGTCCGCAAACCAGAGAAGACGCATATCGAGGAGAGCATTT
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