mRNA_H-paniculata_contig17385.4099.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17385.4099.1
Unique NamemRNA_H-paniculata_contig17385.4099.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17385.4099.1 vs. uniprot
Match: D7FPY9_ECTSI (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPY9_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 1.990e-36
Identity = 67/83 (80.72%), Postives = 77/83 (92.77%), Query Frame = -2
Query:  143 ETVKDLSVIGSEHFPLRSVLVDNQPRSVLQQANVLPIRSWFPKDSQDRQLLDLLPVLLALTSCQDVRSVLGLRPGVTDGAVGG 391
            E+VKDL V+GSEHFPLR+VLVDNQPR+V+QQANVLP++SWFP+D++DRQLLDLLPVLLALTSCQDVRSVL LRPGV  G  GG
Sbjct:  439 ESVKDLQVVGSEHFPLRTVLVDNQPRTVVQQANVLPVKSWFPRDTEDRQLLDLLPVLLALTSCQDVRSVLSLRPGVGVGGGGG 521          
BLAST of mRNA_H-paniculata_contig17385.4099.1 vs. uniprot
Match: A0A6H5JWM9_9PHAE (FCP1 homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM9_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 4.110e-35
Identity = 66/82 (80.49%), Postives = 76/82 (92.68%), Query Frame = -2
Query:  146 ETVKDLSVIGSEHFPLRSVLVDNQPRSVLQQANVLPIRSWFPKDSQDRQLLDLLPVLLALTSCQDVRSVLGLRPGVTDGAVG 391
            E+VKDL V+GSEHFPLR+VLVDNQPR+V+QQANVLP++SWFP+D++DRQLLDLLPVLLALTSCQDVRSVL LRPGV  G  G
Sbjct:  735 ESVKDLQVVGSEHFPLRTVLVDNQPRTVVQQANVLPVKSWFPRDTEDRQLLDLLPVLLALTSCQDVRSVLSLRPGVGVGGGG 816          
BLAST of mRNA_H-paniculata_contig17385.4099.1 vs. uniprot
Match: C4Y807_CLAL4 (FCP1 homology domain-containing protein n=2 Tax=Clavispora lusitaniae TaxID=36911 RepID=C4Y807_CLAL4)

HSP 1 Score: 57.8 bits (138), Expect = 3.710e-7
Identity = 35/79 (44.30%), Postives = 48/79 (60.76%), Query Frame = -2
Query:  167 GLETVKDLSVIGSEHFPLRSVLV-DNQPRS-VLQQANVLPIRSWFPKDSQDRQLLDLLPVLLALTSCQDVRSVLGLRPG 397
            G+  +KDLS   S+   L++V++ DN P S    + N + I  W   D  DR LL+LLP+L AL+ C DVR +LGLR G
Sbjct:  269 GVGYIKDLSKFFSKDDDLKNVIILDNSPVSYAFHENNAVMIEGWI-NDQSDRDLLNLLPMLTALSLCIDVRFILGLRSG 346          
BLAST of mRNA_H-paniculata_contig17385.4099.1 vs. uniprot
Match: M2VTB3_GALSU (CTD small phosphatase like isoform 1 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTB3_GALSU)

HSP 1 Score: 57.4 bits (137), Expect = 5.560e-7
Identity = 33/72 (45.83%), Postives = 48/72 (66.67%), Query Frame = -2
Query:  173 VKDLSVIGSEHFPLRSVLVDNQPRSV-LQQANVLPIRSWFPKDSQDRQLLDLLPVLLALTSCQDVRSVLGLR 385
            +KDL V+G +    + V++DN P++  LQ  N +PI +W   DS+DR+LLDLLP L  L++C+DVR  L  R
Sbjct:  387 LKDLRVLGRDLS--KCVILDNSPQAFGLQVENGIPITTWVD-DSEDRELLDLLPFLKQLSNCEDVRPFLSKR 455          
BLAST of mRNA_H-paniculata_contig17385.4099.1 vs. uniprot
Match: A0A1L0BKV1_9ASCO (CIC11C00000003019 n=2 Tax=[Candida] intermedia TaxID=45354 RepID=A0A1L0BKV1_9ASCO)

HSP 1 Score: 56.6 bits (135), Expect = 9.540e-7
Identity = 34/79 (43.04%), Postives = 50/79 (63.29%), Query Frame = -2
Query:  167 GLETVKDLSVIGSEHFPLRSVLV-DNQPRS-VLQQANVLPIRSWFPKDSQDRQLLDLLPVLLALTSCQDVRSVLGLRPG 397
            G+  +KDLS   ++   L++V++ DN P S  LQ+ N + I  W   D  DR LL+LLP+L +L+ C DVR ++GLR G
Sbjct:  277 GVGYIKDLSQFVAKEEDLKNVVILDNSPVSYALQEHNGVMIEGWI-NDQNDRDLLNLLPMLYSLSLCIDVRFIIGLRNG 354          
BLAST of mRNA_H-paniculata_contig17385.4099.1 vs. uniprot
Match: A0A7S3G6I3_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3G6I3_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 1.070e-6
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = -2
Query:  179 VKDLSVIGSEHFPLR-SVLVDNQPRS-VLQQANVLPIRSWFPKDSQDRQLLDLLPVLLALTSCQDVRSVLG 385
            VKDLS +G    PL+ ++++DN P S +LQ  N +PI SWF +   DR+LLDL+PVL  + +  DV  VLG
Sbjct:  202 VKDLSRLGR---PLKDTIILDNSPLSYMLQPENAVPISSWFDQPD-DRELLDLIPVLTTMATVPDVTEVLG 268          
BLAST of mRNA_H-paniculata_contig17385.4099.1 vs. uniprot
Match: A0A8J4V4U0_9MYCE (FCP1 homology domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4V4U0_9MYCE)

HSP 1 Score: 55.5 bits (132), Expect = 2.160e-6
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = -2
Query:  182 VKDLSVIGSEHFPLRS-VLVDNQPRSVL-QQANVLPIRSWFPKDSQDRQLLDLLPVLLALTSCQDVRSVL 385
            VKDLS +G +   L+S ++VDN P S L    N +PI SWF  D  D++LLDLLP+L  LT   DVR VL
Sbjct:  225 VKDLSRLGRD---LKSTIIVDNSPNSYLFHPENAIPIDSWFD-DKNDKELLDLLPLLDDLTKVDDVRLVL 290          
BLAST of mRNA_H-paniculata_contig17385.4099.1 vs. uniprot
Match: CTDS_DICDI (Probable C-terminal domain small phosphatase n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=CTDS_DICDI)

HSP 1 Score: 54.7 bits (130), Expect = 4.110e-6
Identity = 36/70 (51.43%), Postives = 45/70 (64.29%), Query Frame = -2
Query:  182 VKDLSVIGSEHFPLRS-VLVDNQPRSVL-QQANVLPIRSWFPKDSQDRQLLDLLPVLLALTSCQDVRSVL 385
            VKDLS +G +   L+S ++VDN P S L    N +PI SWF  D  DR+LLDLLP+L  L   +DVR VL
Sbjct:  235 VKDLSRLGRD---LKSTIIVDNSPSSYLFHPENAIPIDSWFD-DKDDRELLDLLPLLDDLIKVEDVRLVL 300          
BLAST of mRNA_H-paniculata_contig17385.4099.1 vs. uniprot
Match: UPI001C806D8C (Nuclear envelope morphology protein 1 n=1 Tax=Scheffersomyces spartinae TaxID=45513 RepID=UPI001C806D8C)

HSP 1 Score: 54.3 bits (129), Expect = 6.670e-6
Identity = 34/79 (43.04%), Postives = 47/79 (59.49%), Query Frame = -2
Query:  167 GLETVKDLSVIGSEHFPLRSVLV-DNQPRS-VLQQANVLPIRSWFPKDSQDRQLLDLLPVLLALTSCQDVRSVLGLRPG 397
            G+  +KDLS    +   L+ V++ DN P S  L + N + I  W   D  DR LL+LLP+L +L+ C DVR +LGLR G
Sbjct:  441 GVGYIKDLSKFFPKDDELKHVVILDNSPVSYALHEDNAVMIEGWI-NDQDDRDLLNLLPMLHSLSVCIDVRFILGLRSG 518          
BLAST of mRNA_H-paniculata_contig17385.4099.1 vs. uniprot
Match: I0YM63_COCSC (NLI interacting factor (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YM63_COCSC)

HSP 1 Score: 52.8 bits (125), Expect = 1.010e-5
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = -2
Query:  179 VKDLSVIGSEHFPLR-SVLVDNQPRS-VLQQANVLPIRSWFPKDSQDRQLLDLLPVLLALTSCQDVRSVLG 385
            VKDL+ +G    PL  S++VDN P S V Q  N LPI + F  D  DR+LLD+LPVL A+    DVR  LG
Sbjct:  107 VKDLTCLGR---PLPDSIIVDNSPHSYVFQPDNALPIGT-FIDDPNDRELLDILPVLKAVEKVDDVRVTLG 173          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17385.4099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FPY9_ECTSI1.990e-3680.72FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JWM9_9PHAE4.110e-3580.49FCP1 homology domain-containing protein n=1 Tax=Ec... [more]
C4Y807_CLAL43.710e-744.30FCP1 homology domain-containing protein n=2 Tax=Cl... [more]
M2VTB3_GALSU5.560e-745.83CTD small phosphatase like isoform 1 n=1 Tax=Galdi... [more]
A0A1L0BKV1_9ASCO9.540e-743.04CIC11C00000003019 n=2 Tax=[Candida] intermedia Tax... [more]
A0A7S3G6I3_9EUKA1.070e-647.89Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A8J4V4U0_9MYCE2.160e-651.43FCP1 homology domain-containing protein n=1 Tax=Po... [more]
CTDS_DICDI4.110e-651.43Probable C-terminal domain small phosphatase n=1 T... [more]
UPI001C806D8C6.670e-643.04Nuclear envelope morphology protein 1 n=1 Tax=Sche... [more]
I0YM63_COCSC1.010e-550.70NLI interacting factor (Fragment) n=1 Tax=Coccomyx... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17385contigH-paniculata_contig17385:4048..4448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929368.1421967-UTR-H-paniculata_contig17385:4047..40761622929368.1421967-UTR-H-paniculata_contig17385:4047..4076Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17385 4048..4076 +
1691480833.0234575-UTR-H-paniculata_contig17385:4047..40761691480833.0234575-UTR-H-paniculata_contig17385:4047..4076Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17385 4048..4076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929368.1548119-CDS-H-paniculata_contig17385:4076..44481622929368.1548119-CDS-H-paniculata_contig17385:4076..4448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17385 4077..4448 +
1691480833.034292-CDS-H-paniculata_contig17385:4076..44481691480833.034292-CDS-H-paniculata_contig17385:4076..4448Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17385 4077..4448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17385.4099.1prot_H-paniculata_contig17385.4099.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17385 4077..4448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17385.4099.1

>prot_H-paniculata_contig17385.4099.1 ID=prot_H-paniculata_contig17385.4099.1|Name=mRNA_H-paniculata_contig17385.4099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MVSCQLSKAFNSEYYSHRALVVATAAAPAAAATLGVSIPPTAPSVTPGLS
PSTDRTSWHEVSARSTGSRSNNCRSCESLGNHERIGRTFACCRTERGWLS
TSTERRGKCSEPITDKSLTVSNPA
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mRNA from alignment at H-paniculata_contig17385:4048..4448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17385.4099.1 ID=mRNA_H-paniculata_contig17385.4099.1|Name=mRNA_H-paniculata_contig17385.4099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=401bp|location=Sequence derived from alignment at H-paniculata_contig17385:4048..4448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCATCCATCACTCAAAAGTAAAAATAAATGGTTTCCTGTCAACTAAGC AAAGCTTTCAACTCCGAATATTATTCCCACCGAGCGCTGGTGGTCGCCAC TGCCGCCGCCCCCGCTGCCGCCGCCACCCTCGGCGTCTCCATTCCGCCGA CCGCACCGTCCGTCACACCAGGCCTCAGCCCCAGCACAGACCGCACGTCC TGGCACGAGGTGAGCGCGAGAAGCACGGGCAGTAGGTCCAACAACTGTCG GTCCTGCGAGTCCTTGGGAAACCACGAGCGAATCGGCAGGACGTTTGCCT GCTGCAGGACCGAGCGGGGCTGGTTGTCAACGAGCACGGAACGCAGAGGG AAATGCTCCGAGCCAATCACTGACAAATCCTTGACAGTTTCCAATCCCGC C
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Coding sequence (CDS) from alignment at H-paniculata_contig17385:4048..4448+

>mRNA_H-paniculata_contig17385.4099.1 ID=mRNA_H-paniculata_contig17385.4099.1|Name=mRNA_H-paniculata_contig17385.4099.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig17385:4048..4448+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTTCCTGTCAACTAAGCAAAGCTTTCAACTCCGAATATTATTCCCA
CCGAGCGCTGGTGGTCGCCACTGCCGCCGCCCCCGCTGCCGCCGCCACCC
TCGGCGTCTCCATTCCGCCGACCGCACCGTCCGTCACACCAGGCCTCAGC
CCCAGCACAGACCGCACGTCCTGGCACGAGGTGAGCGCGAGAAGCACGGG
CAGTAGGTCCAACAACTGTCGGTCCTGCGAGTCCTTGGGAAACCACGAGC
GAATCGGCAGGACGTTTGCCTGCTGCAGGACCGAGCGGGGCTGGTTGTCA
ACGAGCACGGAACGCAGAGGGAAATGCTCCGAGCCAATCACTGACAAATC
CTTGACAGTTTCCAATCCCGCCATGGTTTCCTGTCAACTAAGCAAAGCTT
TCAACTCCGAATATTATTCCCACCGAGCGCTGGTGGTCGCCACTGCCGCC
GCCCCCGCTGCCGCCGCCACCCTCGGCGTCTCCATTCCGCCGACCGCACC
GTCCGTCACACCAGGCCTCAGCCCCAGCACAGACCGCACGTCCTGGCACG
AGGTGAGCGCGAGAAGCACGGGCAGTAGGTCCAACAACTGTCGGTCCTGC
GAGTCCTTGGGAAACCACGAGCGAATCGGCAGGACGTTTGCCTGCTGCAG
GACCGAGCGGGGCTGGTTGTCAACGAGCACGGAACGCAGAGGGAAATGCT
CCGAGCCAATCACTGACAAATCCTTGACAGTTTCCAATCCCGCC
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