prot_H-paniculata_contig17341.4083.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17341.4083.1
Unique Nameprot_H-paniculata_contig17341.4083.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length328
Homology
BLAST of mRNA_H-paniculata_contig17341.4083.1 vs. uniprot
Match: D8LBH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBH3_ECTSI)

HSP 1 Score: 233 bits (593), Expect = 3.830e-71
Identity = 141/323 (43.65%), Postives = 190/323 (58.82%), Query Frame = 0
Query:    7 NYGTFIIPSECGQVQAWRDEEVESELQTKNYQNNPCMTFLDETPSAAAV----DFRLRRKEDGSFGVRLGTDRGEVVLLQVDEDIARIRGLREGDVVSHVDGRPLLGSLRTAITRVKDVKDTIQLRIQTSSEDSYATTSRGHSRRKYHVVQHLVRQGDSIEGLAAQHGTTPEQIRSDNRRHFPVGETGFLCPGQTLMLRASLI--ASDGTVPGDEGDHRQRNCKGRLSPGTGRIEGTRKQILYEVQEGDSLESICSRLGAQEAEVRRCNRRVFPVGEAGTLTPGKLLTVFATECHSSAAEEARECLGKEYVVRGSLR-FGGRR 322
            NYGTFI     G  + +      S      YQ       L     A +V    ++R+  +EDG FG+RL    GEVVL ++D+D+AR RGL EGDVV+H+DG PLLGSL+ A   +    D++ LR+Q+   +S   T  G  + KYHVVQH+VRQGDS+E LA Q+G T +++R  NR++FPVGE G LCPGQ L LR +    A D      +   R+R  +G         +G RK++LY+V+EGDSL+SIC+RL  +E EVR  NR VFPVGEAG + PG+ LTVFA +C     EE      +E   R  ++ F GR+
Sbjct:    9 NYGTFIASPGHGAEEDYGGNTASS------YQR-----LLSAPAPAFSVHHDQEYRIALREDGMFGLRLTKHGGEVVLSEMDDDVARARGLCEGDVVTHMDGEPLLGSLKAAAECMDQAGDSLSLRVQSGHSNS--RTGDGPRKAKYHVVQHIVRQGDSVEALAEQYGVTADEVRIWNRKYFPVGEPGCLCPGQVLTLRDTTADQAKDRNRASLDSTARRRKSEG---------DGARKRMLYQVREGDSLKSICARLKLKEGEVRGLNRGVFPVGEAGVVLPGQTLTVFAEDCDILVTEEGSGHSTEELDERAFIQDFTGRK 309          
BLAST of mRNA_H-paniculata_contig17341.4083.1 vs. uniprot
Match: A0A0P1AJC6_PLAHL (Peptidoglycan-binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJC6_PLAHL)

HSP 1 Score: 75.5 bits (184), Expect = 9.640e-12
Identity = 48/143 (33.57%), Postives = 68/143 (47.55%), Query Frame = 0
Query:  154 HLVRQGDSIEGLAAQHGTTPEQIRSDNRRHFPVGETGFLCPGQTLMLR----ASLIASDGTVPGDEGDHRQRNCKGRLSPG---TGRIEGTRKQILYEVQEGDSLESICSRLGAQEAEVRRCNRRVFPVGEAGTLTPGKLLTV 289
            HLV  G+++  +AA + TT E +R DNRR+FP GE G LCPGQ L +R      +   D T  GD  D +  +           TG      +   + V   D+ ESIC       +   + NR  +PVG+   L PG+ + V
Sbjct:   99 HLVSAGETLRHIAALYNTTEEILRQDNRRYFPTGERGLLCPGQLLHVRLINTGEMEKDDPTTSGDA-DAKALSLSSMSEEEATYTGTSAAFARYKTHLVAPEDTFESICKTFNIPYSYFLQINRGRYPVGKRAELVPGERVVV 240          
BLAST of mRNA_H-paniculata_contig17341.4083.1 vs. uniprot
Match: A0A4D9DA30_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA30_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 2.830e-10
Identity = 54/174 (31.03%), Postives = 81/174 (46.55%), Query Frame = 0
Query:  151 VVQHLVRQGDSIEGLAAQHGTTPEQIRSDNRRHFPVGET-GFLCPGQTLMLR---------ASLIASDG-----------------------TVPGDEGDHRQRNC--KGRLSPGTGRIEGTRKQILYEVQEGDSLESICSRLGAQEAEVRRCNRRVFPVGEAGTLTPGKLLTV 289
            +  +LV+ GDS+  +A   G + + +R DNR  F VGE  G L  GQ L +R         A+++AS G                        VP  EG + + N   K  +  G G          + V++G++L+S+C++ G    E+RR NRR FPVGE G +  G  L+V
Sbjct:  267 LFHYLVQAGDSLPSIARAFGVSVDVLRRDNRDKFRVGEAAGVLSAGQKLRVRNRDYDARATAAMVASGGWEGRRXXXXXXXXXXXXXXXXGVEVPSSEGRNGELNGEQKSGVWAGVGGPASREPGGRHVVRKGETLQSLCTQYGVDALELRRRNRRHFPVGEKGEVWEGMCLSV 440          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17341.4083.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LBH3_ECTSI3.830e-7143.65Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A0P1AJC6_PLAHL9.640e-1233.57Peptidoglycan-binding protein n=1 Tax=Plasmopara h... [more]
A0A4D9DA30_9STRA2.830e-1031.03Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018392LysM domainSMARTSM00257LysM_2coord: 153..201
e-value: 0.17
score: 20.6
coord: 242..290
e-value: 0.43
score: 16.7
IPR018392LysM domainPFAMPF01476LysMcoord: 243..270
e-value: 0.0059
score: 16.7
coord: 154..198
e-value: 2.9E-4
score: 20.8
IPR018392LysM domainPROSITEPS51782LYSMcoord: 152..200
score: 10.478
IPR018392LysM domainPROSITEPS51782LYSMcoord: 241..289
score: 8.677
NoneNo IPR availableGENE3D2.30.42.10coord: 47..137
e-value: 1.4E-6
score: 30.2
NoneNo IPR availableSUPERFAMILY54106LysM domaincoord: 152..200
IPR036779LysM domain superfamilyGENE3D3.10.350.10coord: 138..205
e-value: 1.6E-6
score: 29.5
coord: 235..302
e-value: 2.8E-5
score: 25.5
IPR001478PDZ domainPROSITEPS50106PDZcoord: 56..133
score: 9.491
IPR036034PDZ superfamilySUPERFAMILY50156PDZ domain-likecoord: 60..138

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17341contigH-paniculata_contig17341:857..5333 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17341.4083.1mRNA_H-paniculata_contig17341.4083.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17341 78..5392 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17341.4083.1 ID=prot_H-paniculata_contig17341.4083.1|Name=mRNA_H-paniculata_contig17341.4083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=328bp
MGPVCTNYGTFIIPSECGQVQAWRDEEVESELQTKNYQNNPCMTFLDETP
SAAAVDFRLRRKEDGSFGVRLGTDRGEVVLLQVDEDIARIRGLREGDVVS
HVDGRPLLGSLRTAITRVKDVKDTIQLRIQTSSEDSYATTSRGHSRRKYH
VVQHLVRQGDSIEGLAAQHGTTPEQIRSDNRRHFPVGETGFLCPGQTLML
RASLIASDGTVPGDEGDHRQRNCKGRLSPGTGRIEGTRKQILYEVQEGDS
LESICSRLGAQEAEVRRCNRRVFPVGEAGTLTPGKLLTVFATECHSSAAE
EARECLGKEYVVRGSLRFGGRREGVFG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018392LysM_dom
IPR036779LysM_dom_sf
IPR001478PDZ
IPR036034PDZ_sf