|
|
Homology
BLAST of mRNA_H-paniculata_contig17341.4083.1 vs. uniprot
Match: D8LBH3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBH3_ECTSI) HSP 1 Score: 236 bits (601), Expect = 5.330e-69 Identity = 146/340 (42.94%), Postives = 194/340 (57.06%), Query Frame = 3
Query: 78 NYGTFIIPSECGQVQAWRDEEVESELQTKNYQNNPCMTFLDETPSAAAV----DFRLRRKEDGSFGVRLGTDRGEVVLLQVDEDIARIRGLREGDVVSHVDGRPLLGSLRTAITRVKDVKDTIQLRIQTSSEDSYATTSRGHSRRKYHVVQHLVRQGDSIEGLAAQHGTTPEQIRSDNRRHFPVGETGFLCPGQTLMLRASLI--ASDGTVPGDEGDHRQRNCKGRLSPGTGRIEGTRKQILYEVQEGDSLESICSRLGAQEAEVRRCNRRVFPVGEAGTLTPGKLLTVFATECHSSAAEE----ARECLGKEYVV---------RGSLRFGGRREGVFG 1040
NYGTFI G + + S YQ L A +V ++R+ +EDG FG+RL GEVVL ++D+D+AR RGL EGDVV+H+DG PLLGSL+ A + D++ LR+Q+ +S T G + KYHVVQH+VRQGDS+E LA Q+G T +++R NR++FPVGE G LCPGQ L LR + A D + R+R +G +G RK++LY+V+EGDSL+SIC+RL +E EVR NR VFPVGEAG + PG+ LTVFA +C EE + E L + + R SL G R GV G
Sbjct: 9 NYGTFIASPGHGAEEDYGGNTASS------YQR-----LLSAPAPAFSVHHDQEYRIALREDGMFGLRLTKHGGEVVLSEMDDDVARARGLCEGDVVTHMDGEPLLGSLKAAAECMDQAGDSLSLRVQSGHSNS--RTGDGPRKAKYHVVQHIVRQGDSVEALAEQYGVTADEVRIWNRKYFPVGEPGCLCPGQVLTLRDTTADQAKDRNRASLDSTARRRKSEG---------DGARKRMLYQVREGDSLKSICARLKLKEGEVRGLNRGVFPVGEAGVVLPGQTLTVFAEDCDILVTEEGSGHSTEELDERAFIQDFTGRKTKRSSLSLGIRGAGVMG 326
BLAST of mRNA_H-paniculata_contig17341.4083.1 vs. uniprot
Match: A0A0P1AJC6_PLAHL (Peptidoglycan-binding protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJC6_PLAHL) HSP 1 Score: 75.5 bits (184), Expect = 4.140e-11 Identity = 48/143 (33.57%), Postives = 68/143 (47.55%), Query Frame = 3
Query: 519 HLVRQGDSIEGLAAQHGTTPEQIRSDNRRHFPVGETGFLCPGQTLMLR----ASLIASDGTVPGDEGDHRQRNCKGRLSPG---TGRIEGTRKQILYEVQEGDSLESICSRLGAQEAEVRRCNRRVFPVGEAGTLTPGKLLTV 926
HLV G+++ +AA + TT E +R DNRR+FP GE G LCPGQ L +R + D T GD D + + TG + + V D+ ESIC + + NR +PVG+ L PG+ + V
Sbjct: 99 HLVSAGETLRHIAALYNTTEEILRQDNRRYFPTGERGLLCPGQLLHVRLINTGEMEKDDPTTSGDA-DAKALSLSSMSEEEATYTGTSAAFARYKTHLVAPEDTFESICKTFNIPYSYFLQINRGRYPVGKRAELVPGERVVV 240
BLAST of mRNA_H-paniculata_contig17341.4083.1 vs. uniprot
Match: A0A4D9DA30_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DA30_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.490e-9 Identity = 54/174 (31.03%), Postives = 81/174 (46.55%), Query Frame = 3
Query: 510 VVQHLVRQGDSIEGLAAQHGTTPEQIRSDNRRHFPVGET-GFLCPGQTLMLR---------ASLIASDG-----------------------TVPGDEGDHRQRNC--KGRLSPGTGRIEGTRKQILYEVQEGDSLESICSRLGAQEAEVRRCNRRVFPVGEAGTLTPGKLLTV 926
+ +LV+ GDS+ +A G + + +R DNR F VGE G L GQ L +R A+++AS G VP EG + + N K + G G + V++G++L+S+C++ G E+RR NRR FPVGE G + G L+V
Sbjct: 267 LFHYLVQAGDSLPSIARAFGVSVDVLRRDNRDKFRVGEAAGVLSAGQKLRVRNRDYDARATAAMVASGGWEGRRXXXXXXXXXXXXXXXXGVEVPSSEGRNGELNGEQKSGVWAGVGGPASREPGGRHVVRKGETLQSLCTQYGVDALELRRRNRRHFPVGEKGEVWEGMCLSV 440
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 235.3 |
| Seed ortholog evalue | 3.9e-59 |
| Seed eggNOG ortholog | 2880.D8LBH3 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | Lysin motif |
| EggNOG OGs | 2CXKY@1,2RYBK@2759 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-27_003970.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 2 |
| Model size | 1822 |
| Cds size | 984 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17341.4083.1 >prot_H-paniculata_contig17341.4083.1 ID=prot_H-paniculata_contig17341.4083.1|Name=mRNA_H-paniculata_contig17341.4083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=328bp
MGPVCTNYGTFIIPSECGQVQAWRDEEVESELQTKNYQNNPCMTFLDETP
SAAAVDFRLRRKEDGSFGVRLGTDRGEVVLLQVDEDIARIRGLREGDVVS
HVDGRPLLGSLRTAITRVKDVKDTIQLRIQTSSEDSYATTSRGHSRRKYH
VVQHLVRQGDSIEGLAAQHGTTPEQIRSDNRRHFPVGETGFLCPGQTLML
RASLIASDGTVPGDEGDHRQRNCKGRLSPGTGRIEGTRKQILYEVQEGDS
LESICSRLGAQEAEVRRCNRRVFPVGEAGTLTPGKLLTVFATECHSSAAE
EARECLGKEYVVRGSLRFGGRREGVFG* back to topmRNA from alignment at H-paniculata_contig17341:78..5392- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig17341.4083.1 ID=mRNA_H-paniculata_contig17341.4083.1|Name=mRNA_H-paniculata_contig17341.4083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5315bp|location=Sequence derived from alignment at H-paniculata_contig17341:78..5392- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTTTTTCGTTGTGAAGAACGCACTGACATTACAGTCGGAGAGACCAGGG
GAGGACGGCATGGGGCCGGTTTGCACCAACTACGGCACATTCATTATCCC
TTCCGAGTGCGGTCAGGTTCAGGCGTGGCGTGATGAGGAGGTGGAGTCGG
AGTTGCAAACCAAAAATTATCAAAATAACCCATGCATGACTTTCTTAGAC
GAGACCCCATCAGCGGCCGCTGTGGACTTTCGTTTGAGAAGGAAGGAGGA
CGGGAGCTTCGGGGTTCGCTTAGGGACCGATAGAGGGGAGGTGGTCTTGT
TGCAGGTGGATGAAGATATAGCACGGGTGAGTTACCACCCTATCCATCGT
GAGTCTATCATGGAGTGAACATGCGGGATAGGTGTGATGGTACTGGTGTA
CCATCATACTGGTGTACGCCGATGATGTGCATGTGAGCTTTTCGTCTGGT
TTCGTAAGATGCTCAGTGTACATGCCATGTGAGAAATAAAAGTGCCTCAT
GTACTTTACGCAATGAGCGACATTTATGCAGGTGCACCAGGTTTTACTAG
CTATCGCTGTGTTGCGGGAAGCGGGTTGTGCCTTTCCTCGCTTTTTCCCA
ACCTGGCTGTCTGCGAATCGATGACTCCCAAAGCACGCATGAGATTCCAT
TTTTTATTATTTGAACTCCTACATGTTTCGAATACAGCATGTTTCAATCA
GCAACGTGCTATTTTAATACCAATTTTGGAAAGCGGCAAAGTCATCAAAA
CTGTCGGTGAAGGACTCACTCAGCAGCTGCAGTTGCCAGGCAGCCGGGGT
TCTTCGCGAGAACTTCATAGAGAAGGAGGGTGATGGCAAGGGACCATCCG
CTTTCTGCCCACGATATTTTTACTTTGGTGGCGTTAGGCCCGTCTAAACC
CTGTAAGGGCACGGAAGCTATTTCGGAATAAAAATACATGAATAAATTCT
AGTCACCGCGACTGTAATCTTTTGTGTGCAGATACTACTGGACTGGCTGT
CTGAGCAGCAAGGGCCCCCTTCCCCTCTAACCATGTCGCACGTATTGTTT
TCCTGTTCCTAAGCTGGAGATTATGCAAAGGCCAGGTTCCAAAGCGTTAA
TCCATAACACCGTAGGCTCAACTATTCCGAATATATGAAGCTGACGTTCC
AGGGCGCTTGAAAGGGGGATTCTGCTGGCTCGGATCGGTGAAAATTGGGG
AAGTGACCACAATAAGCGTACATGCACCACAAATCCACCTCTGTAGTGAT
AGTTCTATTTCGCGTGCCCGTGCCCAAACAACTCGGTTTTTGAAGTCGTT
GGTGTTCCATCTCGTTGGAAGGCCTATGGCGCAGGGGTTTGGGAATTCTG
TTCATTTTACAGTCGCTGGCATTACTTCTTTTTTTATTCGTTTCAACATC
CGGGAATTCCATTTCTACGAGAGTCGATATGCGGACTTCATGCGGAATTT
TCGGCGGATTTTACAGAGTTTGGGTTTCGGTTTTTCAAATAAGTCGAATA
TTTCTAATATGGAATCCCGAATTTCGACTTTGAAGGATGTTATATGCGAG
TTTTCCTTTCTTCGAAGATTTCATGTCTGGCGGGATTTTATTCTCTCTCC
CCCTTACAGACCAGCAAGCCTGTATTTCGTCAAATTTCGACATGTAGTTT
TTGACAGTTAGTTCCACGTCAAAACGGGGGGGTAGTCTATCTGAAAAAAA
ATGTAGGGGGGCAGTTTTTGGCAGGTGGGGAGTACCGAATTTCGACGAAT
AGAACTGCTTTGACTAGGTTGACACCAAACCCGCATGTCGACAAACATAT
GATATATAGTATGACGGGATTGCGACGTATTTTGCTTATCTAAACGAATG
TAGAATATTAAATATCAACGCTAGGTGTAAGCTGGTATCGGTAATTTTGA
CAAATTCACGTACGTCGAGGGCTGGCACAACAGCCCGAGCGCCGTAGACT
TGACCTAAAAAGTGGTGCAGCTGACAGACTGCAGTACACACATTGGGTCT
CTTGAGCGGTGACAGTCAGCTGCAGAGCGTTAGCACCATAATGCCGTAGA
CTTGGGCCCGACAGAGGATAGAGATAGTATTTGCTGCAGGCATCCGCATT
ATCATCCCGAGATTTCCGTGGCGAACGATCGCCGCTACGTGTGTGGCGTC
CTGTTATGAGAAACGATACCCACGGACAGCGGCAAACGGTGTGCCAAAGT
CAATCGTGGCAATCGGGATATGACAACGTGAATTATATCTATCGTAGTTG
GTAATTAAGCGTTGACTTTCTGGAACAAAGTTGTTCCTATCAGCTTGTTT
TCTTTTTTTCAGGTGTGAGGGGGGTTAACATTCAACATGTGGAATTTCGT
CTTGAAAACTTTTATAAGCAACACTTACCTCCATTATAAAGATTTTGTGT
GCAGGCTTCCGTATCTCCAGGATATTCTCGTTGACATTGATAACGCCCAA
AATGCCGCCGTCTTCGAAATATACAACATTCGGAAATTCAAAAGTTCTTG
CGTCAGCACCCGTTACGTACCCCCCCACATATTTACTTTCACATCCGCTC
GTCCCTCCCTGAGCCACTTGAGCCCGTCCTTCTGGCATCACTAGTATCTA
CCAGATATATCGCCATCAAAATCCCATAAAACACCAAAGTCGTTGTTGTG
AGAGCGGGTTCTATCTGAAGAGTTTATTGGTGAAAGAAGGGTTCAAGTTT
CTGCCAGACGGTGTCTCGGACGTCATTCCTTCATTGTTCTGGGTTGCCAC
CCCGTACTGTCTACACGATCATATCAAAACTTTGTCAGGGCACTGACCGC
TGGCTGACACGGTAGTTAGCACGGATCACAGAGAGAACAGAGGTGCTGTG
AGCCACGTCATACCCTGCTTGCTGCGCCAGCACAGTAGAAAGCCTGATGC
GATACAAGGCTGGTGATCAAAGTATTGTCTATCTGTAGCTGCTTCACTGC
TGCTGTCAAAAGTTATCCTGTCTGTAAGACAGTACATTCGTTGGTTACTA
CTGGACTATGTGGCACCAAATACATAGAACTGGGCCCATGTCAATATCCA
TGAGGCATGCGTGCTTGTATAGCTCTCGTAGGACATGAGCGTGGGATGTC
GAACGACGCTGACATCGCAAGTTTACAAATCACGTCATTCAATTTCTTTA
CTTATATTTCGCTTTATTCCACTTCTCGTCCTCTCCACCAAACAATGACA
AGGCACATTCATTTAAGTATCCACCCTATATATATATATTGAACACATGG
TGTAGTACGAATCTTATTTTGTAATTGTTTTTTCTGTTGTCCGTTCTTGT
TTTGAACTAAACCGGAAGAGCATCGAACCAACAAGGGTTGAGCTACAGTT
TCCTGGAACTTTCCTGCCTGCTCATGATGTAATGTGGGTACGGATACAAA
TATGCGCCTAATTGTGCGCCTCACGTTTCGTCCGTATCGTTGAAGCTACA
GACACCCCCACTGGACATTCAACATCTCGGTACATAGTCGCAGTCCATCG
GAAGACGGGACGCTTCGTTTGAGTGATGATTGGTTCGATCGTGGAGAGGA
GCAATGTCCGCGAGGAAGGTTGCGTTCAATTATTTTCAGAAAACGGTGCT
GTGTGCCACCATTTCGACTTTCGTTTATTGCTATACACAAATCTCTGTTC
CTTGGGCCATCAAGATACACGTACCCAACCCGAAACAAGTACATCGGTCG
TGGTCACAGGGTTACTGTACTGTATTGTTGCTATTGCTCTCATATCGATC
GTCTCATTCCTGTACTTTCTTTCATGTTGACCCCGGGGTGTATTTCGAAA
CGCCGTGCATTCGAAGCAGATCCGTGGCTTACGTGAAGGCGATGTTGTAT
CACACGTCGATGGCCGACCACTCCTCGGCTCATTGCGAACGGCAATCACA
CGCGTCAAGGACGTGAAGGACACCATCCAGCTCCGTATCCAAACCTCATC
CGAAGACAGTTACGCCACCACTTCGCGTGGCCATAGTAGAAGAAAGTACC
ACGTGGTGCAACATCTGGTTCGGCAAGGTGACTCGATAGAGGGTCTTGCC
GCCCAGCATGGTACGACACCGGAACAGATCCGATCCGACAATAGACGTCA
TTTTCCCGTCGGGGAGACTGGCTTCTTGTGCCCGGGGCAAACTCTCATGC
TACGCGCCTCTCTGATAGCAAGCGATGGTACGGTTCCGGGTGACGAGGGT
GACCATCGGCAACGGAATTGCAAGGGCCGTTTGAGCCCGGGCACGGGCAG
GATAGAGGGTACACGGAAACAGATACTGTACGAAGTTCAGGAAGGAGATT
CGCTAGAGAGCATCTGCTCACGGTTAGGGGCACAGGAGGCGGAGGTGCGC
CGGTGCAATCGGAGAGTGTTCCCAGTAGGAGAGGCGGGAACGCTTACGCC
CGGTAAGCTGCTGACGGTCTTTGCGACGGAGTGTCACTCATCGGCAGCCG
AGGAAGCTAGAGAATGTCTGGGTAAAGAGTACGTTGTACGAGGATCGTTG
AGGTTTGGTGGTCGCAGAGAGGGAGTTTTTGGTTGATTTCAGTTCTTGTT
TTCATACCGACAGTGATAGTTTTGGACTTGACGGTAATGGCATATGTATA
GATGGTGGAAGATTGGACGTACTAGTAGACAGAATGTGCCTGGGTTCCAG
GTGACCTTGAGATCTTGTCATATTAAAGACTACGTTGTTATGTCACCATT
CTGGACGTTTCTCCATTGCTCAAAATTAGAAGGCATAGGAGGCGTTTTTT
TGTTAGAGTTGCTGTCTATAGCAGTTGGCAATAGTTGTGTTTAACCAATG
CGTGTTGTACAATAGAATGTCAACGATGTACACGTAATGATTGCTCTGAG
TGGACTGCACATTTACCATTCGTTGCACCTTTCCATAAAACCATCTTCAC
CCCGTCGCCCGTCCCTCTCTTTGATGAGTTGTCATAACTATCTCTTGTTT
CCTATTTGTAGTATTACTCAGAGAAACTGATTTGAAGTCGAGTGCGTTTT
GTATTGTCCGTGGAAAACGTACACATATGTATAAAGAAGAATGCCGCGAT
TAGTAGAGTAGTGAAGGAAGATGGGATGACCATGCGGGCCTCTGGAAGTA
GGTAGCTGAGCGCGTGTGAACGTCAATGAACGATGTTCCACGGACCTACG
CCCGAACGGGTAGGGTAACTCGTGAACTGAGCATGACTGAAAGTCTAGTC
ATAGGTCTTTTAGTGGGTGCAACCCTCACACTGCCTACTTTTTCTTTTTT
TTTTTAACCCCCGGAAGGCTAAGGCAAAACCCTTTCCGCTGCTTCCACTC
TTCGGAAGATTACTG back to topCoding sequence (CDS) from alignment at H-paniculata_contig17341:78..5392- >mRNA_H-paniculata_contig17341.4083.1 ID=mRNA_H-paniculata_contig17341.4083.1|Name=mRNA_H-paniculata_contig17341.4083.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1968bp|location=Sequence derived from alignment at H-paniculata_contig17341:78..5392- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGCCGGTTTGCACCAACTACGGCACATTCATTATCCCTTCCGAGTG
CGGTCAGGTTCAGGCGTGGCGTGATGAGGAGGTGGAGTCGGAGTTGCAAA
CCAAAAATTATCAAAATAACCCATGCATGACTTTCTTAGACGAGACCCCA
TCAGCGGCCGCTGTGGACTTTCGTTTGAGAAGGAAGGAGGACGGGAGCTT
CGGGGTTCGCTTAGGGACCGATAGAGGGGAGGTGGTCTTGTTGCAGGTGG
ATGAAGATATAGCACGGATGGGGCCGGTTTGCACCAACTACGGCACATTC
ATTATCCCTTCCGAGTGCGGTCAGGTTCAGGCGTGGCGTGATGAGGAGGT
GGAGTCGGAGTTGCAAACCAAAAATTATCAAAATAACCCATGCATGACTT
TCTTAGACGAGACCCCATCAGCGGCCGCTGTGGACTTTCGTTTGAGAAGG
AAGGAGGACGGGAGCTTCGGGGTTCGCTTAGGGACCGATAGAGGGGAGGT
GGTCTTGTTGCAGGTGGATGAAGATATAGCACGGATCCGTGGCTTACGTG
AAGGCGATGTTGTATCACACGTCGATGGCCGACCACTCCTCGGCTCATTG
CGAACGGCAATCACACGCGTCAAGGACGTGAAGGACACCATCCAGCTCCG
TATCCAAACCTCATCCGAAGACAGTTACGCCACCACTTCGCGTGGCCATA
GTAGAAGAAAGTACCACGTGGTGCAACATCTGGTTCGGCAAGGTGACTCG
ATAGAGGGTCTTGCCGCCCAGCATGGTACGACACCGGAACAGATCCGATC
CGACAATAGACGTCATTTTCCCGTCGGGGAGACTGGCTTCTTGTGCCCGG
GGCAAACTCTCATGCTACGCGCCTCTCTGATAGCAAGCGATGGTACGGTT
CCGGGTGACGAGGGTGACCATCGGCAACGGAATTGCAAGGGCCGTTTGAG
CCCGGGCACGGGCAGGATAGAGGGTACACGGAAACAGATACTGTACGAAG
TTCAGGAAGGAGATTCGCTAGAGAGCATCTGCTCACGGTTAGGGGCACAG
GAGGCGGAGGTGCGCCGGTGCAATCGGAGAGTGTTCCCAGTAGGAGAGGC
GGGAACGCTTACGCCCGGTAAGCTGCTGACGGTCTTTGCGACGGAGTGTC
ACTCATCGGCAGCCGAGGAAGCTAGAGAATGTCTGGGTAAAGAGTACGTT
GTACGAGGATCGTTGAGGTTTGGTGGTCGCAGAGAGGGAGTTTTTGGTTG
AATCCGTGGCTTACGTGAAGGCGATGTTGTATCACACGTCGATGGCCGAC
CACTCCTCGGCTCATTGCGAACGGCAATCACACGCGTCAAGGACGTGAAG
GACACCATCCAGCTCCGTATCCAAACCTCATCCGAAGACAGTTACGCCAC
CACTTCGCGTGGCCATAGTAGAAGAAAGTACCACGTGGTGCAACATCTGG
TTCGGCAAGGTGACTCGATAGAGGGTCTTGCCGCCCAGCATGGTACGACA
CCGGAACAGATCCGATCCGACAATAGACGTCATTTTCCCGTCGGGGAGAC
TGGCTTCTTGTGCCCGGGGCAAACTCTCATGCTACGCGCCTCTCTGATAG
CAAGCGATGGTACGGTTCCGGGTGACGAGGGTGACCATCGGCAACGGAAT
TGCAAGGGCCGTTTGAGCCCGGGCACGGGCAGGATAGAGGGTACACGGAA
ACAGATACTGTACGAAGTTCAGGAAGGAGATTCGCTAGAGAGCATCTGCT
CACGGTTAGGGGCACAGGAGGCGGAGGTGCGCCGGTGCAATCGGAGAGTG
TTCCCAGTAGGAGAGGCGGGAACGCTTACGCCCGGTAAGCTGCTGACGGT
CTTTGCGACGGAGTGTCACTCATCGGCAGCCGAGGAAGCTAGAGAATGTC
TGGGTAAAGAGTACGTTGTACGAGGATCGTTGAGGTTTGGTGGTCGCAGA
GAGGGAGTTTTTGGTTGA back to top
|