mRNA_H-paniculata_contig17323.4073.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Match: A0A6H5JFG1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFG1_9PHAE) HSP 1 Score: 209 bits (533), Expect = 1.190e-64 Identity = 111/152 (73.03%), Postives = 126/152 (82.89%), Query Frame = 1
Query: 1 NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQLPDDVDTVTLSALRRDRGRDKRVAVLVGGKDAVQESLESAIPFSAALETSDILIVPLVLDS----TGTGADRFKASGVENDLESAVGRPHVGLPVALNRWQEYIDTEV 444
N+ +DV A+ V L++RDL AQ GR+ARMEIGAKLAGLKVRLQ DD+ TVTLSALRRDRGRDKRVAVLVGG + V+ SLESA+P+ ALETSDILIVPLVL+S TG GAD F+ASG E+DLESAVG HV LPVALNRWQEYID+EV
Sbjct: 141 NIVVDVTAMAVFVGLVKRDLDAQEGRMARMEIGAKLAGLKVRLQTKDDLSTVTLSALRRDRGRDKRVAVLVGGAETVKSSLESALPYGKALETSDILIVPLVLESRSGTTGGGADMFRASGAESDLESAVGSAHVALPVALNRWQEYIDSEV 292
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Match: A0A835ZF95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF95_9STRA) HSP 1 Score: 150 bits (378), Expect = 4.560e-42 Identity = 83/148 (56.08%), Postives = 102/148 (68.92%), Query Frame = 1
Query: 1 NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQLPDDVDTVTLSALRRDRGRDKRVAVLVGGKDAVQESLESAIPFSAALETSDILIVPLVLDSTGTGADRFKASGVENDLESAVGRPHVGLPVALNRWQEYIDTEV 444
N+ ID+ AI SA LI+RDLAAQ+ RL RMEIGAKLAGLKVR Q+ + T+ LSA RR RGRDKRVA++VGG DAV SL +AIP+S L+ +DI++VPL + LE AVG+ HV LPV LN WQE++DTEV
Sbjct: 100 NIGIDLAAIIGSALLIKRDLAAQNSRLVRMEIGAKLAGLKVRTQVESEEATIPLSAFRRQRGRDKRVAIVVGGADAVAASLSTAIPYSDELDRADIVLVPL------------------SQLEEAVGQKHVALPVMLNSWQEWVDTEV 229
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Match: A0A0G4E9P3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4E9P3_VITBC) HSP 1 Score: 138 bits (348), Expect = 1.140e-37 Identity = 75/158 (47.47%), Postives = 109/158 (68.99%), Query Frame = 1
Query: 1 NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQLPDDVDTVTLSALRRDRGRDKRVAVLVGGKDAVQESLESAIPFSAALETSDILIVPLVLDSTGT--GADRFKAS-------GVENDLESAVGRPHVGLPVALNRWQEYIDTEVL 447
N+AIDV AI V AFL +RDL +Q+ R R+ GAKLA L ++LQ+ DD + V+L+ LRR RGR+KRVA+++GGK+AVQ SL+SA+P S+ L +D+L+VPLV+ TG A+R +++DLES G+PHV LP N+W + + +E++
Sbjct: 64 NLAIDVAAIAVIAFLWRRDLISQNSRYERISQGAKLAALGLQLQMADDSNVVSLADLRRRRGREKRVAIVLGGKEAVQRSLDSAVPVSSELLANDLLVVPLVIGQTGDELNAERITDGPRIATLFNLQSDLESREGQPHVALPFGFNQWIDTLQSELV 221
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Match: K8Z5D5_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z5D5_NANGC) HSP 1 Score: 90.1 bits (222), Expect = 1.990e-18 Identity = 57/153 (37.25%), Postives = 87/153 (56.86%), Query Frame = 1
Query: 1 NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQL---PDDVDTVTLSALRRDRGRDKRVAVLVGGKDAVQESLESA--IPFSAALETSDILIVPLVLDSTGTGADRFKASGVEND-LESAVGRPHVGLPVALNRWQEYIDTE 441
++AID+GAIG++A L D ++ +L R+ GAK+A LKV++Q + ++L+ RRDRG +RV + GG+D VQ +L +A L + L+VPLVL + G D G+ + L+ A PHVG P+ L WQ+Y+ E
Sbjct: 186 DIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRRDRGMARRVVIFAGGEDVVQAALNTAGEAGMKERLIRNAFLVVPLVLPADGE--DNPSVLGLAQERLQGAQDEPHVGWPLLLREWQDYLAAE 336
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Match: UPI0010A2D580 (protein LOW PSII ACCUMULATION 1, chloroplastic-like isoform X1 n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A2D580) HSP 1 Score: 60.1 bits (144), Expect = 8.640e-8 Identity = 41/147 (27.89%), Postives = 76/147 (51.70%), Query Frame = 1
Query: 1 NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQLPDDVDTVTLSALRRDRGRDKRVAVLVGGKDAVQESLESAIPFSAALETSDILIVPLVLDSTGTGADRFKASGVENDLESAVGRPHVGLPVALNRWQEYIDTE 441
++AID+GA+ + AFL R+ A++ +L+R+ L+ LK+R+ ++ T+ +S LR R+ + G + ES S+ PF+ +L +L+VPLV D +F S + + + R PV + W E+++ +
Sbjct: 139 DLAIDLGAVSIFAFLYYRENKAKNAQLSRLSREESLSNLKLRV---NEKKTIPVSTLRGIA----RLVICAGPASFITESFNSSEPFTESLLERGVLVVPLVTDGDSPSL-KFDESEEQKQVTTKRKRLWQLAPVFITEWFEWLEEQ 277
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Match: A0A7S2YDW0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YDW0_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 3.170e-5 Identity = 50/177 (28.25%), Postives = 77/177 (43.50%), Query Frame = 1
Query: 1 NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQLPD-DVDTVTLSALRRDRGRDKRVAVLVGGKDAVQ--------ESLESAIPFSAALETSDILIVPLVLDSTGT-------GADRFKASGVENDLESAVGRPHVGLPVALNR-------------WQEYIDTEV 444
N AI++GA+ +SAFL+QRDL A + L R++ G +LA L V P + + TL+ RR RV + GG+ ++ + L L SD+L+VP++L G F DL RP +G + R WQ+ +D+E+
Sbjct: 162 NDAINLGAVLLSAFLVQRDLQAGNRNLQRIQTGGQLAALPVEPMSPVFNYGSFTLADYRRQA----RVLICAGGESYLRRLALSLTSDQLSDTNILPQRLAESDVLVVPVLLRPDGNYGYVVSRETKAFWNRLQSFDLYDETFRPELGRNFDITRAQEIIAFPRNAPQWQDVLDSEI 334
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Match: A0A7S3DR83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DR83_9STRA) HSP 1 Score: 52.8 bits (125), Expect = 3.470e-5 Identity = 50/177 (28.25%), Postives = 77/177 (43.50%), Query Frame = 1
Query: 1 NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQLPD-DVDTVTLSALRRDRGRDKRVAVLVGGKDAVQ--------ESLESAIPFSAALETSDILIVPLVLDSTGT-------GADRFKASGVENDLESAVGRPHVGLPVALNR-------------WQEYIDTEV 444
N AI++GA+ +SAFL+QRDL A + L R++ G +LA L V P + + TL+ RR RV + GG+ ++ + L L SD+L+VP++L G F DL RP +G + R WQ+ +D+E+
Sbjct: 282 NDAINLGAVLLSAFLVQRDLQAGNRNLQRIQTGGQLAALPVEPMSPVFNYGSFTLADYRRQA----RVLICAGGESYLRRLALSLTSDQLSDTNILPQRLAESDVLVVPVLLRPDGNYGYVVSRETKAFWNRLQSFDLYDETFRPELGRNFDITRAQEIIAFPRNAPQWQDVLDSEI 454 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17323.4073.1 >prot_H-paniculata_contig17323.4073.1 ID=prot_H-paniculata_contig17323.4073.1|Name=mRNA_H-paniculata_contig17323.4073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQLPDDVDback to top mRNA from alignment at H-paniculata_contig17323:3128..4072- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17323.4073.1 ID=mRNA_H-paniculata_contig17323.4073.1|Name=mRNA_H-paniculata_contig17323.4073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=945bp|location=Sequence derived from alignment at H-paniculata_contig17323:3128..4072- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17323:3128..4072- >mRNA_H-paniculata_contig17323.4073.1 ID=mRNA_H-paniculata_contig17323.4073.1|Name=mRNA_H-paniculata_contig17323.4073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig17323:3128..4072- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |