mRNA_H-paniculata_contig17323.4073.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17323.4073.1
Unique NamemRNA_H-paniculata_contig17323.4073.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Match: A0A6H5JFG1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFG1_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 1.190e-64
Identity = 111/152 (73.03%), Postives = 126/152 (82.89%), Query Frame = 1
Query:    1 NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQLPDDVDTVTLSALRRDRGRDKRVAVLVGGKDAVQESLESAIPFSAALETSDILIVPLVLDS----TGTGADRFKASGVENDLESAVGRPHVGLPVALNRWQEYIDTEV 444
            N+ +DV A+ V   L++RDL AQ GR+ARMEIGAKLAGLKVRLQ  DD+ TVTLSALRRDRGRDKRVAVLVGG + V+ SLESA+P+  ALETSDILIVPLVL+S    TG GAD F+ASG E+DLESAVG  HV LPVALNRWQEYID+EV
Sbjct:  141 NIVVDVTAMAVFVGLVKRDLDAQEGRMARMEIGAKLAGLKVRLQTKDDLSTVTLSALRRDRGRDKRVAVLVGGAETVKSSLESALPYGKALETSDILIVPLVLESRSGTTGGGADMFRASGAESDLESAVGSAHVALPVALNRWQEYIDSEV 292          
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Match: A0A835ZF95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF95_9STRA)

HSP 1 Score: 150 bits (378), Expect = 4.560e-42
Identity = 83/148 (56.08%), Postives = 102/148 (68.92%), Query Frame = 1
Query:    1 NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQLPDDVDTVTLSALRRDRGRDKRVAVLVGGKDAVQESLESAIPFSAALETSDILIVPLVLDSTGTGADRFKASGVENDLESAVGRPHVGLPVALNRWQEYIDTEV 444
            N+ ID+ AI  SA LI+RDLAAQ+ RL RMEIGAKLAGLKVR Q+  +  T+ LSA RR RGRDKRVA++VGG DAV  SL +AIP+S  L+ +DI++VPL                  + LE AVG+ HV LPV LN WQE++DTEV
Sbjct:  100 NIGIDLAAIIGSALLIKRDLAAQNSRLVRMEIGAKLAGLKVRTQVESEEATIPLSAFRRQRGRDKRVAIVVGGADAVAASLSTAIPYSDELDRADIVLVPL------------------SQLEEAVGQKHVALPVMLNSWQEWVDTEV 229          
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Match: A0A0G4E9P3_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4E9P3_VITBC)

HSP 1 Score: 138 bits (348), Expect = 1.140e-37
Identity = 75/158 (47.47%), Postives = 109/158 (68.99%), Query Frame = 1
Query:    1 NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQLPDDVDTVTLSALRRDRGRDKRVAVLVGGKDAVQESLESAIPFSAALETSDILIVPLVLDSTGT--GADRFKAS-------GVENDLESAVGRPHVGLPVALNRWQEYIDTEVL 447
            N+AIDV AI V AFL +RDL +Q+ R  R+  GAKLA L ++LQ+ DD + V+L+ LRR RGR+KRVA+++GGK+AVQ SL+SA+P S+ L  +D+L+VPLV+  TG    A+R            +++DLES  G+PHV LP   N+W + + +E++
Sbjct:   64 NLAIDVAAIAVIAFLWRRDLISQNSRYERISQGAKLAALGLQLQMADDSNVVSLADLRRRRGREKRVAIVLGGKEAVQRSLDSAVPVSSELLANDLLVVPLVIGQTGDELNAERITDGPRIATLFNLQSDLESREGQPHVALPFGFNQWIDTLQSELV 221          
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Match: K8Z5D5_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z5D5_NANGC)

HSP 1 Score: 90.1 bits (222), Expect = 1.990e-18
Identity = 57/153 (37.25%), Postives = 87/153 (56.86%), Query Frame = 1
Query:    1 NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQL---PDDVDTVTLSALRRDRGRDKRVAVLVGGKDAVQESLESA--IPFSAALETSDILIVPLVLDSTGTGADRFKASGVEND-LESAVGRPHVGLPVALNRWQEYIDTE 441
            ++AID+GAIG++A L   D   ++ +L R+  GAK+A LKV++Q      +   ++L+  RRDRG  +RV +  GG+D VQ +L +A        L  +  L+VPLVL + G   D     G+  + L+ A   PHVG P+ L  WQ+Y+  E
Sbjct:  186 DIAIDLGAIGLAALLWNLDSQTKARKLGRLSRGAKIASLKVQVQDGGGAGERPVLSLADFRRDRGMARRVVIFAGGEDVVQAALNTAGEAGMKERLIRNAFLVVPLVLPADGE--DNPSVLGLAQERLQGAQDEPHVGWPLLLREWQDYLAAE 336          
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Match: UPI0010A2D580 (protein LOW PSII ACCUMULATION 1, chloroplastic-like isoform X1 n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A2D580)

HSP 1 Score: 60.1 bits (144), Expect = 8.640e-8
Identity = 41/147 (27.89%), Postives = 76/147 (51.70%), Query Frame = 1
Query:    1 NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQLPDDVDTVTLSALRRDRGRDKRVAVLVGGKDAVQESLESAIPFSAALETSDILIVPLVLDSTGTGADRFKASGVENDLESAVGRPHVGLPVALNRWQEYIDTE 441
            ++AID+GA+ + AFL  R+  A++ +L+R+     L+ LK+R+   ++  T+ +S LR       R+ +  G    + ES  S+ PF+ +L    +L+VPLV D       +F  S  +  + +   R     PV +  W E+++ +
Sbjct:  139 DLAIDLGAVSIFAFLYYRENKAKNAQLSRLSREESLSNLKLRV---NEKKTIPVSTLRGIA----RLVICAGPASFITESFNSSEPFTESLLERGVLVVPLVTDGDSPSL-KFDESEEQKQVTTKRKRLWQLAPVFITEWFEWLEEQ 277          
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Match: A0A7S2YDW0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YDW0_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.170e-5
Identity = 50/177 (28.25%), Postives = 77/177 (43.50%), Query Frame = 1
Query:    1 NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQLPD-DVDTVTLSALRRDRGRDKRVAVLVGGKDAVQ--------ESLESAIPFSAALETSDILIVPLVLDSTGT-------GADRFKASGVENDLESAVGRPHVGLPVALNR-------------WQEYIDTEV 444
            N AI++GA+ +SAFL+QRDL A +  L R++ G +LA L V    P  +  + TL+  RR      RV +  GG+  ++        + L         L  SD+L+VP++L   G            F       DL     RP +G    + R             WQ+ +D+E+
Sbjct:  162 NDAINLGAVLLSAFLVQRDLQAGNRNLQRIQTGGQLAALPVEPMSPVFNYGSFTLADYRRQA----RVLICAGGESYLRRLALSLTSDQLSDTNILPQRLAESDVLVVPVLLRPDGNYGYVVSRETKAFWNRLQSFDLYDETFRPELGRNFDITRAQEIIAFPRNAPQWQDVLDSEI 334          
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Match: A0A7S3DR83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DR83_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.470e-5
Identity = 50/177 (28.25%), Postives = 77/177 (43.50%), Query Frame = 1
Query:    1 NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQLPD-DVDTVTLSALRRDRGRDKRVAVLVGGKDAVQ--------ESLESAIPFSAALETSDILIVPLVLDSTGT-------GADRFKASGVENDLESAVGRPHVGLPVALNR-------------WQEYIDTEV 444
            N AI++GA+ +SAFL+QRDL A +  L R++ G +LA L V    P  +  + TL+  RR      RV +  GG+  ++        + L         L  SD+L+VP++L   G            F       DL     RP +G    + R             WQ+ +D+E+
Sbjct:  282 NDAINLGAVLLSAFLVQRDLQAGNRNLQRIQTGGQLAALPVEPMSPVFNYGSFTLADYRRQA----RVLICAGGESYLRRLALSLTSDQLSDTNILPQRLAESDVLVVPVLLRPDGNYGYVVSRETKAFWNRLQSFDLYDETFRPELGRNFDITRAQEIIAFPRNAPQWQDVLDSEI 454          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17323.4073.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JFG1_9PHAE1.190e-6473.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZF95_9STRA4.560e-4256.08Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0G4E9P3_VITBC1.140e-3747.47Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
K8Z5D5_NANGC1.990e-1837.25Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
UPI0010A2D5808.640e-827.89protein LOW PSII ACCUMULATION 1, chloroplastic-lik... [more]
A0A7S2YDW0_9STRA3.170e-528.25Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A7S3DR83_9STRA3.470e-528.25Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17323contigH-paniculata_contig17323:3128..4072 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score62.4
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog3649.evm.model.supercontig_87.75
KEGG koko:K19861
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF3493)
EggNOG OGs2CMTG@1,2QRW2@2759,37QE1@33090,3GFE8@35493,3I1VD@3699
Ec32 ortholog descriptionProtein of unknown function DUF3493
Ec32 orthologEc-14_000880.1
EC2.3.1.196,2.3.1.232
COG Functional cat.S
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size447
Cds size447
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929365.1624606-CDS-H-paniculata_contig17323:3127..34421622929365.1624606-CDS-H-paniculata_contig17323:3127..3442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17323 3128..3442 -
1691480831.8306718-CDS-H-paniculata_contig17323:3127..34421691480831.8306718-CDS-H-paniculata_contig17323:3127..3442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17323 3128..3442 -
1622929365.1875987-CDS-H-paniculata_contig17323:3940..40721622929365.1875987-CDS-H-paniculata_contig17323:3940..4072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17323 3941..4072 -
1691480831.8426676-CDS-H-paniculata_contig17323:3940..40721691480831.8426676-CDS-H-paniculata_contig17323:3940..4072Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17323 3941..4072 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17323.4073.1prot_H-paniculata_contig17323.4073.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17323 3128..4072 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17323.4073.1

>prot_H-paniculata_contig17323.4073.1 ID=prot_H-paniculata_contig17323.4073.1|Name=mRNA_H-paniculata_contig17323.4073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
NVAIDVGAIGVSAFLIQRDLAAQSGRLARMEIGAKLAGLKVRLQLPDDVD
TVTLSALRRDRGRDKRVAVLVGGKDAVQESLESAIPFSAALETSDILIVP
LVLDSTGTGADRFKASGVENDLESAVGRPHVGLPVALNRWQEYIDTEVL
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mRNA from alignment at H-paniculata_contig17323:3128..4072-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17323.4073.1 ID=mRNA_H-paniculata_contig17323.4073.1|Name=mRNA_H-paniculata_contig17323.4073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=945bp|location=Sequence derived from alignment at H-paniculata_contig17323:3128..4072- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGTTGCCATCGATGTTGGGGCCATAGGGGTCTCAGCGTTCCTGATCCA GCGGGATCTCGCTGCCCAAAGCGGACGTCTAGCTCGCATGGAGATCGGTG CGAAATTGGCCGGCCTGAAAGTCAGATTGCAGGTACAAGGGTACATGGAT ACAAGGGTACCACGAAGGGTCAACAACGTCTGGCTTGTGTATTTATTTCA AAGCGAATCCTGCGGTATAGGTTTTGACCCCCTTGTTGTAGTCTTTCATA CGCGGAGCTTTTTTTTACGTGGCTATATATTGGTTCTCGCTGGCCAGATG CGCCTCGTTGAGATGTAGTTAGTTTTGATCCTTGAAGGAGCGTTCGTTGT TGTTACACACCATGGGAAAATGGTCCATTTTTTATTTTGTTTTTTTCTGT TTGGATCATTTTCACGCACCTACAGTACCTCGGAATATTTCTTCCTTGTT TAGAAGGTTAATAATGAGATAGACCCCACCCACGAGTTTGTTTCATTGAT GTTGAATTTAGAATTTGCCAGTCTCTCTCTGTTTGCCAATCGCCACAACC TCACAAAAAGTACAAAGGTTAGCTACTGTTTATATGAACCCCGTTCCGCC TGCCCGTTACCCCCCCCTCCCCTCCCGCAGTTGCCAGACGATGTGGATAC CGTGACGCTTTCGGCGTTACGGCGTGACCGTGGCCGCGACAAACGCGTAG CCGTGCTGGTGGGCGGCAAGGATGCGGTGCAGGAGTCCCTCGAGTCTGCT ATCCCTTTCTCGGCGGCGTTGGAGACGAGCGATATTCTCATCGTGCCTCT CGTCTTGGATTCCACGGGGACCGGGGCTGACAGGTTCAAGGCGTCCGGCG TGGAGAATGACCTTGAATCTGCCGTGGGGAGGCCGCATGTTGGACTGCCG GTCGCGCTGAATAGATGGCAGGAGTACATCGATACCGAGGTGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig17323:3128..4072-

>mRNA_H-paniculata_contig17323.4073.1 ID=mRNA_H-paniculata_contig17323.4073.1|Name=mRNA_H-paniculata_contig17323.4073.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig17323:3128..4072- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACGTTGCCATCGATGTTGGGGCCATAGGGGTCTCAGCGTTCCTGATCCA
GCGGGATCTCGCTGCCCAAAGCGGACGTCTAGCTCGCATGGAGATCGGTG
CGAAATTGGCCGGCCTGAAAGTCAGATTGCAGAACGTTGCCATCGATGTT
GGGGCCATAGGGGTCTCAGCGTTCCTGATCCAGCGGGATCTCGCTGCCCA
AAGCGGACGTCTAGCTCGCATGGAGATCGGTGCGAAATTGGCCGGCCTGA
AAGTCAGATTGCAGTTGCCAGACGATGTGGATACCGTGACGCTTTCGGCG
TTACGGCGTGACCGTGGCCGCGACAAACGCGTAGCCGTGCTGGTGGGCGG
CAAGGATGCGGTGCAGGAGTCCCTCGAGTCTGCTATCCCTTTCTCGGCGG
CGTTGGAGACGAGCGATATTCTCATCGTGCCTCTCGTCTTGGATTCCACG
GGGACCGGGGCTGACAGGTTCAAGGCGTCCGGCGTGGAGAATGACCTTGA
ATCTGCCGTGGGGAGGCCGCATGTTGGACTGCCGGTCGCGCTGAATAGAT
GGCAGGAGTACATCGATACCGAGGTGCTGTTGCCAGACGATGTGGATACC
GTGACGCTTTCGGCGTTACGGCGTGACCGTGGCCGCGACAAACGCGTAGC
CGTGCTGGTGGGCGGCAAGGATGCGGTGCAGGAGTCCCTCGAGTCTGCTA
TCCCTTTCTCGGCGGCGTTGGAGACGAGCGATATTCTCATCGTGCCTCTC
GTCTTGGATTCCACGGGGACCGGGGCTGACAGGTTCAAGGCGTCCGGCGT
GGAGAATGACCTTGAATCTGCCGTGGGGAGGCCGCATGTTGGACTGCCGG
TCGCGCTGAATAGATGGCAGGAGTACATCGATACCGAGGTGCTG
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