mRNA_H-paniculata_contig1723.4028.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: D8LDU1_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU1_ECTSI) HSP 1 Score: 166 bits (419), Expect = 6.480e-47 Identity = 76/100 (76.00%), Postives = 85/100 (85.00%), Query Frame = 3
Query: 3 KQALTKPGQEPSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNTSGGGVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRAL 302
KQA TKPG++PSL CF GGAAAGAG+WG++YPL+T+KTRMQ DHVDP+KR YSGL+DC K T G AFYKGFTP ITRAMPVNGAIF GFTAAQRAL
Sbjct: 186 KQAFTKPGEQPSLTTCFAGGAAAGAGFWGVWYPLETLKTRMQGDHVDPSKRLYSGLVDCFKKTMAEGGAAFYKGFTPSITRAMPVNGAIFTGFTAAQRAL 285
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A835Z5H4_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5H4_9STRA) HSP 1 Score: 139 bits (349), Expect = 2.020e-36 Identity = 65/101 (64.36%), Postives = 80/101 (79.21%), Query Frame = 3
Query: 3 KQALTKPGQEPSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDC-AKNTSGGGVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRAL 302
K ALTK G+EP+L CFV G AAG G+WGL+YPL+TIKTR+QSD +PA R+Y G++D AK + GG+KAFYKG+ P I RA+PVN AIF GFTAAQRA+
Sbjct: 186 KAALTKKGEEPTLATCFVAGGAAGFGFWGLWYPLETIKTRIQSDAPEPALRKYKGIMDAFAKTQAEGGLKAFYKGYVPSIARAVPVNAAIFTGFTAAQRAM 286
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A6B2LCD6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LCD6_9EUKA) HSP 1 Score: 103 bits (258), Expect = 4.010e-23 Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 3
Query: 3 KQALTKPGQEPSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCA---KNTSGGGVKAFYKGFTPCITRAMPVNGAIFLGFTAAQR 296
KQ LTK G++P+L F+ G AAG G+WG++YPLD IKTR+Q+D P R+YS LDC T GG AF++G+ P I RA+P+N ++FL A +R
Sbjct: 180 KQFLTKKGEKPTLSTIFLAGGAAGFGFWGIWYPLDIIKTRLQTDATLPQDRKYSSTLDCVVKMMKTEGGA--AFWRGWVPSIVRAIPINASVFLAVNATKR 278
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A2R5GTK5_9STRA (Mitochondrial substrate carrier family protein G n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTK5_9STRA) HSP 1 Score: 102 bits (255), Expect = 1.380e-22 Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 3
Query: 12 LTKPGQEPSLPVCF----VGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNT-SGGGVKAFYKGFTPCITRAMPVNGAIF 272
+ PG+ S F VGGA AG +WGL YPL+TIKTRMQSDH+ KR Y +LDCA T + GGV+AF+KG+ P +TRA+PVN AIF
Sbjct: 190 VNTPGEPASPQQVFLGGLVGGACAGGMFWGLLYPLETIKTRMQSDHIVKEKRLYKSVLDCASKTYAEGGVQAFFKGYIPSLTRAVPVNAAIF 281
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A168QV22_ABSGL (Uncharacterized protein n=2 Tax=Absidia TaxID=4828 RepID=A0A168QV22_ABSGL) HSP 1 Score: 96.3 bits (238), Expect = 4.590e-20 Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 3
Query: 33 PSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNTSG-GGVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRAL 302
P+ VC G AA+G WG YPLD IK+++Q+D DPA R+Y+G LDCA+ T G+ F++G PC+ RA P N A FLGF AA R L
Sbjct: 216 PAWEVCLYG-AASGYALWGTVYPLDAIKSKLQTDAFDPANRKYTGALDCARKTLAVEGMAGFFRGIGPCLLRAAPSNAATFLGFEAAMRLL 305
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A8H7ERE5_9FUNG (Mitochondrial carrier protein ymc2 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7ERE5_9FUNG) HSP 1 Score: 94.0 bits (232), Expect = 3.440e-19 Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 3
Query: 3 KQALTKPGQE----PSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNTSGG-GVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRAL 302
KQ++ K G++ P+ VC G A AG WG YP+D IK+++Q+D D A R+YS +LDC + T GV F++G PC+ RA P N A F+GF A RAL
Sbjct: 203 KQSMDKTGRKRAELPAWEVCLYG-ATAGYAMWGTAYPIDAIKSKLQTDGFDKATRKYSSVLDCVRKTMAAEGVAGFFRGIGPCLLRAAPSNAATFMGFELAMRAL 306
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A8H7PLL3_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PLL3_9FUNG) HSP 1 Score: 94.0 bits (232), Expect = 3.440e-19 Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 3
Query: 27 QEPSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNT-SGGGVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRAL 302
Q P+ VC G A +G W + YPLD IK+++Q+DH+D +KR+Y +DCA+ + GVK F++GF PC+ RA PVN FLGF A R L
Sbjct: 218 QIPTTQVCLYG-AMSGYAMWLMMYPLDIIKSKLQTDHLDVSKRQYRSAIDCARQVFATEGVKGFFRGFGPCMLRAAPVNAVTFLGFETAMRIL 309
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A8H7PNJ7_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PNJ7_MORIS) HSP 1 Score: 91.7 bits (226), Expect = 2.040e-18 Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 3
Query: 33 PSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNTSGG-GVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRAL 302
P+ +C G A G WG+ YPLD IK+++Q+D++D +KR+Y LDCA+ G K F++GF PC+ RA PVN FLGF A R L
Sbjct: 207 PTTQICLYG-ALGGYAMWGMMYPLDVIKSKLQTDNLDVSKRQYRSALDCARQVMATEGPKGFFRGFGPCMLRAAPVNAVTFLGFETAMRFL 296
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A433PW61_9FUNG (Mitochondrial carrier domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PW61_9FUNG) HSP 1 Score: 91.3 bits (225), Expect = 3.170e-18 Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query: 6 QALTKPGQEPSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNT-SGGGVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRAL 302
+ L Q P+ VC G A AG W YP+D +K+++Q+D R+Y+G+LDCA+ T + G+K F++GF PC+ RA PVN A F+GF AA R L
Sbjct: 206 EGLKSRNQIPTWKVCGFG-ACAGYAMWLTVYPIDVVKSKLQTDGFTKETRKYTGILDCARKTWAAEGLKGFFRGFGPCMLRAAPVNAATFVGFEAAMRVL 304
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A1Y1WJ13_9FUNG (Mitochondrial carrier protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WJ13_9FUNG) HSP 1 Score: 90.5 bits (223), Expect = 4.480e-18 Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 3
Query: 30 EPSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNTSGG-GVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRALG 305
E S + + G AAG WG YP+D IK+++Q+D KR+Y G LDCA+ G+K F++G TPC+ RA P NGA F+GF A R LG
Sbjct: 192 ELSTALVCLYGTAAGFAMWGTSYPIDAIKSKLQTDGFSGEKRKYYGTLDCARKIMRQEGLKGFFRGITPCLLRAAPANGATFVGFEIAMRYLG 284 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1723.4028.1 >prot_H-paniculata_contig1723.4028.1 ID=prot_H-paniculata_contig1723.4028.1|Name=mRNA_H-paniculata_contig1723.4028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp MQSDHVDPAKRRYSGLLDCAKNTSGGGVKAFYKGFTPCITRAMPVNGAIFback to top mRNA from alignment at H-paniculata_contig1723:410..2004+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1723.4028.1 ID=mRNA_H-paniculata_contig1723.4028.1|Name=mRNA_H-paniculata_contig1723.4028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1595bp|location=Sequence derived from alignment at H-paniculata_contig1723:410..2004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1723:410..2004+ >mRNA_H-paniculata_contig1723.4028.1 ID=mRNA_H-paniculata_contig1723.4028.1|Name=mRNA_H-paniculata_contig1723.4028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig1723:410..2004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |