mRNA_H-paniculata_contig1723.4028.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1723.4028.1
Unique NamemRNA_H-paniculata_contig1723.4028.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: D8LDU1_ECTSI (Carnitine/acylcarnitine carrier protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU1_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 6.480e-47
Identity = 76/100 (76.00%), Postives = 85/100 (85.00%), Query Frame = 3
Query:    3 KQALTKPGQEPSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNTSGGGVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRAL 302
            KQA TKPG++PSL  CF GGAAAGAG+WG++YPL+T+KTRMQ DHVDP+KR YSGL+DC K T   G  AFYKGFTP ITRAMPVNGAIF GFTAAQRAL
Sbjct:  186 KQAFTKPGEQPSLTTCFAGGAAAGAGFWGVWYPLETLKTRMQGDHVDPSKRLYSGLVDCFKKTMAEGGAAFYKGFTPSITRAMPVNGAIFTGFTAAQRAL 285          
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A835Z5H4_9STRA (Carnitine/acylcarnitine carrier protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5H4_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.020e-36
Identity = 65/101 (64.36%), Postives = 80/101 (79.21%), Query Frame = 3
Query:    3 KQALTKPGQEPSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDC-AKNTSGGGVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRAL 302
            K ALTK G+EP+L  CFV G AAG G+WGL+YPL+TIKTR+QSD  +PA R+Y G++D  AK  + GG+KAFYKG+ P I RA+PVN AIF GFTAAQRA+
Sbjct:  186 KAALTKKGEEPTLATCFVAGGAAGFGFWGLWYPLETIKTRIQSDAPEPALRKYKGIMDAFAKTQAEGGLKAFYKGYVPSIARAVPVNAAIFTGFTAAQRAM 286          
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A6B2LCD6_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LCD6_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 4.010e-23
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 3
Query:    3 KQALTKPGQEPSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCA---KNTSGGGVKAFYKGFTPCITRAMPVNGAIFLGFTAAQR 296
            KQ LTK G++P+L   F+ G AAG G+WG++YPLD IKTR+Q+D   P  R+YS  LDC      T GG   AF++G+ P I RA+P+N ++FL   A +R
Sbjct:  180 KQFLTKKGEKPTLSTIFLAGGAAGFGFWGIWYPLDIIKTRLQTDATLPQDRKYSSTLDCVVKMMKTEGGA--AFWRGWVPSIVRAIPINASVFLAVNATKR 278          
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A2R5GTK5_9STRA (Mitochondrial substrate carrier family protein G n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTK5_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.380e-22
Identity = 51/92 (55.43%), Postives = 63/92 (68.48%), Query Frame = 3
Query:   12 LTKPGQEPSLPVCF----VGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNT-SGGGVKAFYKGFTPCITRAMPVNGAIF 272
            +  PG+  S    F    VGGA AG  +WGL YPL+TIKTRMQSDH+   KR Y  +LDCA  T + GGV+AF+KG+ P +TRA+PVN AIF
Sbjct:  190 VNTPGEPASPQQVFLGGLVGGACAGGMFWGLLYPLETIKTRMQSDHIVKEKRLYKSVLDCASKTYAEGGVQAFFKGYIPSLTRAVPVNAAIF 281          
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A168QV22_ABSGL (Uncharacterized protein n=2 Tax=Absidia TaxID=4828 RepID=A0A168QV22_ABSGL)

HSP 1 Score: 96.3 bits (238), Expect = 4.590e-20
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 3
Query:   33 PSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNTSG-GGVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRAL 302
            P+  VC  G AA+G   WG  YPLD IK+++Q+D  DPA R+Y+G LDCA+ T    G+  F++G  PC+ RA P N A FLGF AA R L
Sbjct:  216 PAWEVCLYG-AASGYALWGTVYPLDAIKSKLQTDAFDPANRKYTGALDCARKTLAVEGMAGFFRGIGPCLLRAAPSNAATFLGFEAAMRLL 305          
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A8H7ERE5_9FUNG (Mitochondrial carrier protein ymc2 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7ERE5_9FUNG)

HSP 1 Score: 94.0 bits (232), Expect = 3.440e-19
Identity = 47/105 (44.76%), Postives = 64/105 (60.95%), Query Frame = 3
Query:    3 KQALTKPGQE----PSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNTSGG-GVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRAL 302
            KQ++ K G++    P+  VC  G A AG   WG  YP+D IK+++Q+D  D A R+YS +LDC + T    GV  F++G  PC+ RA P N A F+GF  A RAL
Sbjct:  203 KQSMDKTGRKRAELPAWEVCLYG-ATAGYAMWGTAYPIDAIKSKLQTDGFDKATRKYSSVLDCVRKTMAAEGVAGFFRGIGPCLLRAAPSNAATFMGFELAMRAL 306          
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A8H7PLL3_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7PLL3_9FUNG)

HSP 1 Score: 94.0 bits (232), Expect = 3.440e-19
Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 3
Query:   27 QEPSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNT-SGGGVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRAL 302
            Q P+  VC  G A +G   W + YPLD IK+++Q+DH+D +KR+Y   +DCA+   +  GVK F++GF PC+ RA PVN   FLGF  A R L
Sbjct:  218 QIPTTQVCLYG-AMSGYAMWLMMYPLDIIKSKLQTDHLDVSKRQYRSAIDCARQVFATEGVKGFFRGFGPCMLRAAPVNAVTFLGFETAMRIL 309          
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A8H7PNJ7_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PNJ7_MORIS)

HSP 1 Score: 91.7 bits (226), Expect = 2.040e-18
Identity = 42/91 (46.15%), Postives = 57/91 (62.64%), Query Frame = 3
Query:   33 PSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNTSGG-GVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRAL 302
            P+  +C  G A  G   WG+ YPLD IK+++Q+D++D +KR+Y   LDCA+      G K F++GF PC+ RA PVN   FLGF  A R L
Sbjct:  207 PTTQICLYG-ALGGYAMWGMMYPLDVIKSKLQTDNLDVSKRQYRSALDCARQVMATEGPKGFFRGFGPCMLRAAPVNAVTFLGFETAMRFL 296          
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A433PW61_9FUNG (Mitochondrial carrier domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PW61_9FUNG)

HSP 1 Score: 91.3 bits (225), Expect = 3.170e-18
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 3
Query:    6 QALTKPGQEPSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNT-SGGGVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRAL 302
            + L    Q P+  VC  G A AG   W   YP+D +K+++Q+D      R+Y+G+LDCA+ T +  G+K F++GF PC+ RA PVN A F+GF AA R L
Sbjct:  206 EGLKSRNQIPTWKVCGFG-ACAGYAMWLTVYPIDVVKSKLQTDGFTKETRKYTGILDCARKTWAAEGLKGFFRGFGPCMLRAAPVNAATFVGFEAAMRVL 304          
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Match: A0A1Y1WJ13_9FUNG (Mitochondrial carrier protein n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WJ13_9FUNG)

HSP 1 Score: 90.5 bits (223), Expect = 4.480e-18
Identity = 43/93 (46.24%), Postives = 57/93 (61.29%), Query Frame = 3
Query:   30 EPSLPVCFVGGAAAGAGYWGLFYPLDTIKTRMQSDHVDPAKRRYSGLLDCAKNTSGG-GVKAFYKGFTPCITRAMPVNGAIFLGFTAAQRALG 305
            E S  +  + G AAG   WG  YP+D IK+++Q+D     KR+Y G LDCA+      G+K F++G TPC+ RA P NGA F+GF  A R LG
Sbjct:  192 ELSTALVCLYGTAAGFAMWGTSYPIDAIKSKLQTDGFSGEKRKYYGTLDCARKIMRQEGLKGFFRGITPCLLRAAPANGATFVGFEIAMRYLG 284          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1723.4028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDU1_ECTSI6.480e-4776.00Carnitine/acylcarnitine carrier protein n=1 Tax=Ec... [more]
A0A835Z5H4_9STRA2.020e-3664.36Carnitine/acylcarnitine carrier protein n=1 Tax=Tr... [more]
A0A6B2LCD6_9EUKA4.010e-2348.51Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A2R5GTK5_9STRA1.380e-2255.43Mitochondrial substrate carrier family protein G n... [more]
A0A168QV22_ABSGL4.590e-2050.55Uncharacterized protein n=2 Tax=Absidia TaxID=4828... [more]
A0A8H7ERE5_9FUNG3.440e-1944.76Mitochondrial carrier protein ymc2 n=1 Tax=Apophys... [more]
A0A8H7PLL3_9FUNG3.440e-1947.31Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A8H7PNJ7_MORIS2.040e-1846.15Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
A0A433PW61_9FUNG3.170e-1844.00Mitochondrial carrier domain-containing protein n=... [more]
A0A1Y1WJ13_9FUNG4.480e-1846.24Mitochondrial carrier protein n=1 Tax=Linderina pe... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1723contigH-paniculata_contig1723:410..2004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue8.3e-19
Seed eggNOG ortholog2880.D8LDU1
KEGG koko:K15109
KEGG TC2.A.29.8
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006839,GO:0008150,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0055085
EggNOG free text desc.mitochondrial transport
EggNOG OGsKOG0758@1,KOG0758@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons2
Model size698
Cds size186
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1723.4028.1prot_H-paniculata_contig1723.4028.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1723 532..1614 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929358.8177183-UTR-H-paniculata_contig1723:409..5311622929358.8177183-UTR-H-paniculata_contig1723:409..531Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1723 410..531 +
1691480829.405736-UTR-H-paniculata_contig1723:409..5311691480829.405736-UTR-H-paniculata_contig1723:409..531Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1723 410..531 +
1622929358.8787482-UTR-H-paniculata_contig1723:1614..20041622929358.8787482-UTR-H-paniculata_contig1723:1614..2004Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1723 1615..2004 +
1691480829.4365594-UTR-H-paniculata_contig1723:1614..20041691480829.4365594-UTR-H-paniculata_contig1723:1614..2004Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1723 1615..2004 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929358.8383389-CDS-H-paniculata_contig1723:531..5371622929358.8383389-CDS-H-paniculata_contig1723:531..537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 532..537 +
1691480829.4188204-CDS-H-paniculata_contig1723:531..5371691480829.4188204-CDS-H-paniculata_contig1723:531..537Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 532..537 +
1622929358.8610466-CDS-H-paniculata_contig1723:1434..16141622929358.8610466-CDS-H-paniculata_contig1723:1434..1614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 1435..1614 +
1691480829.4274971-CDS-H-paniculata_contig1723:1434..16141691480829.4274971-CDS-H-paniculata_contig1723:1434..1614Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 1435..1614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1723.4028.1

>prot_H-paniculata_contig1723.4028.1 ID=prot_H-paniculata_contig1723.4028.1|Name=mRNA_H-paniculata_contig1723.4028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MQSDHVDPAKRRYSGLLDCAKNTSGGGVKAFYKGFTPCITRAMPVNGAIF
LGFTAAQRALG*
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mRNA from alignment at H-paniculata_contig1723:410..2004+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1723.4028.1 ID=mRNA_H-paniculata_contig1723.4028.1|Name=mRNA_H-paniculata_contig1723.4028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1595bp|location=Sequence derived from alignment at H-paniculata_contig1723:410..2004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAAACAAGCCCTCACCAAGCCTGGGCAAGAACCTTCCTTGCCGGTGTGC TTTGTAGGAGGCGCTGCGGCCGGCGCGGGGTACTGGGGTCTATTTTATCC GCTCGACACCATCAAGACGCGAATGCAGGTGGGTCGTGGTGGGGTGTGCT GTTGAAACCTTTTTATGTCTCAACGAGGTACCATTGTTTTCAAACACCAC TACCTCGATAACTACGGCACTGCTGACAACGGCAGGGGCAGGATGGGGCG AGAGGTTTCGTTGGAAAGATCTTGTCAGGTGGTCTCTGTCCTCGAGATAA TCGGGATACCAAAGCGTTCGCACCCCGGTGCCATCACGAAGAGCTTTGCG GTATGTGGAAGCTTGGCCATCGGCGGGCGCTCTCGTATTTCTAGCCGACG TTGCTTGTCTTCGATGCTTGCCGGCGCGCTTTTACATGTGCAGAAGATAT ACATGAGGTGGTAGTCGATAACCGGACATGACGGGCGGAGGTACACAAAT GGTTCTCGAAGTGGTGCGCATTTTTTTCAACTTTTTGCTCCGAGGGCTGT GGGAGCGTTGTTTGTTGTTCGCGGAGAGTAGCGAATGAGTTCCTTAGATA TGTGGTCAAACAGCTCAACAATCGAGCTCTGTGTTGAAGCAGGTCGCTAC GTTTCCCGATGAAAACAGTTTTTAGAGGAAATGTCTGTTGAATGATCTCA AGATTTCACCCATTTCATTGGCCGTAATATGTCGGCGGCTATTCAAACGA ACAACACTGCGAATTGATCCACCTTCACCAGGGTCAATTTTTCAGACCGC CAAAACGTAATCCGCCGGCCTTCCCCCGCCCCTTCCGTCTTTTCCCATTT ACCCACCGCGTTCAATGCTTCTCCGCTCCTCACCAGAATAACGCGCATCC CTTTTGTAGGTTAAGAGACAACTGAACGTTCATGTTCGGTCACGTTGGCA ACAAGCCCGCTGGCGCCCCCCGCTCTGCACGCCCGCACCCCTCCCCCCCC TCCGTCCCGCCGTTGCGTCTTCCAGAGTGATCACGTAGACCCCGCGAAGC GACGCTATTCTGGATTGTTGGATTGTGCTAAAAACACCTCAGGGGGCGGA GTGAAGGCGTTTTACAAGGGGTTCACACCGTGTATTACCCGCGCGATGCC AGTCAACGGCGCAATTTTCCTGGGCTTCACTGCGGCGCAGAGGGCCTTGG GTTAAACGTCGAGCAAACAAATAGAATAGCACCAACAACCATACGCGTTA GATGGGATTGAAGTGGCATGAAAGCCGCATAGATCCACTCCCCTTCACTT CAACTCTGTGTTCCCCGTGTTTGGTATGGTGGCAAGTGCCCCGCGTACAG TTTTGATCCATTCCGGTCCCACCCCGTAGCGGTTTTGGCTATATGTCGAC GTTACAGGGGAGGAGAATGTTGTAAAAATGCTTCACATGTGCATCTAGTC CCAGGAAGGGTAAGGGAGGATATTCACAGATTGAAAATAAGTTTGCGGAA TTCATACTTGAAAATTTATAGTACAACACCGAACAAGCAGCGTAAATCCT TTCCTTGTCCTCTCCCCTTTCTCGTGGCAGGTAAGGACGGAAAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1723:410..2004+

>mRNA_H-paniculata_contig1723.4028.1 ID=mRNA_H-paniculata_contig1723.4028.1|Name=mRNA_H-paniculata_contig1723.4028.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig1723:410..2004+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGATGCAGAGTGATCACGTAGACCCCGCGAAGCGACGCTATTCTGG
ATTGTTGGATTGTGCTAAAAACACCTCAGGGGGCGGAGTGAAGGCGTTTT
ACAAGGGGTTCACACCGTGTATTACCCGCGCGATGCCAGTCAACGGCGCA
ATTTTCCTGGGCTTCACTGCGGCGCAGAGGGCCTTGGGTTAAAGTGATCA
CGTAGACCCCGCGAAGCGACGCTATTCTGGATTGTTGGATTGTGCTAAAA
ACACCTCAGGGGGCGGAGTGAAGGCGTTTTACAAGGGGTTCACACCGTGT
ATTACCCGCGCGATGCCAGTCAACGGCGCAATTTTCCTGGGCTTCACTGC
GGCGCAGAGGGCCTTGGGTTAA
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