mRNA_H-paniculata_contig17223.4026.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 2.100e-13 Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query: 1 KEYQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRRKLELVSYSDASY 225
K YQ ++GSL+FLT R+++ ++V R M+ PT QH++ KR+LRYLR PD+P+ + R + +L Y DAS+
Sbjct: 200 KLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASF 274
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 73.2 bits (178), Expect = 2.130e-13 Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query: 1 KEYQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRRKLELVSYSDASY 225
K YQ ++GSL+FLT R+++ ++V R M+ PT QH++ KR+LRYLR PD+P+ + R + +L Y DAS+
Sbjct: 1183 KLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASF 1257
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A6H5JN95_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN95_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 2.840e-13 Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query: 1 KEYQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRRKLELVSYSDASY 225
+ +QA+ GSL++LTQC R+D+ ++V Q R + P Q H+ A K +LRYLR PD+PI Y + + L ++ +S+
Sbjct: 408 QRFQAITGSLLYLTQCTRYDLSYAVHQLTRARANPAQVHMAAPKHLLRYLRGTPDLPIVYKKVQFRLSCFTSSSF 482
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A438ETV2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ETV2_VITVI) HSP 1 Score: 71.6 bits (174), Expect = 3.720e-13 Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 7 YQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 225
Y + IG+LI+L C R D+ FSV AR+ SAPT++H +K +LRYLR D+ + YSR K +L+ Y+DA Y
Sbjct: 141 YLSAIGALIYLANCTRLDIAFSVNLLARYSSAPTRRHWNGIKHILRYLRGTTDMSLFYSRESKQQLLGYADAGY 214
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A438BRR6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BRR6_VITVI) HSP 1 Score: 68.2 bits (165), Expect = 5.260e-13 Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 7 YQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 225
Y + IG+L++L C R D+ FSV AR+ SAPT++H +K +LRYLR D+ + YSR K +L+ Y+DA Y
Sbjct: 29 YISAIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHILRYLRRTTDMSLFYSRESKQQLLGYADAGY 102
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A5AUL4_VITVI (Uncharacterized protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=A5AUL4_VITVI) HSP 1 Score: 68.2 bits (165), Expect = 1.270e-12 Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 7 YQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 225
Y + IG+L++L C R D+ FSV AR+ SAPT++H +K +LRYLR D+ + YSR K +L+ Y+DA Y
Sbjct: 29 YLSAIGALMYLVNCTRPDIAFSVNLLARYNSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGY 102
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A5B7V5_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B7V5_VITVI) HSP 1 Score: 70.5 bits (171), Expect = 1.870e-12 Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 7 YQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 225
Y + IG+L++L C R D+ FSV AR+ SAPTQ+H +K +LRYLR D+ + YSR K +L+ Y+DA Y
Sbjct: 618 YLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTQRHWNGIKHILRYLRGTTDMSLFYSRESKQQLLGYADAGY 691
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A6G0XGV6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGV6_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 1.880e-12 Identity = 28/73 (38.36%), Postives = 53/73 (72.60%), Query Frame = 1
Query: 7 YQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRRKLELVSYSDASY 225
Y++++GSL++L C R D+ +V + + ++ +P + H++ KR+LRY++S PD+ +T+ R K+ L+ YSDAS+
Sbjct: 644 YRSIVGSLMYLMVCTRPDIAHAVQRLSLYVHSPREPHMIGAKRLLRYIKSTPDVGLTFCRNKITLMGYSDASW 716
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: UPI000AE657F6 (hypothetical protein n=1 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI000AE657F6) HSP 1 Score: 66.6 bits (161), Expect = 1.920e-12 Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1
Query: 1 KEYQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSR-RKLELVSYSDASY 225
K+Y+ MIGSL++LT +R D+ FSV ARF S P + HL+AVKR+ RYL D+ + Y R ++L YSDA +
Sbjct: 14 KKYRGMIGSLLYLT-ASRPDIMFSVCLCARFQSCPKESHLLAVKRIFRYLSGTIDLGLWYPRGTHIDLTCYSDADF 88
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A5D3DVM8_CUCME (Putative mitochondrial protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DVM8_CUCME) HSP 1 Score: 69.7 bits (169), Expect = 2.720e-12 Identity = 34/74 (45.95%), Postives = 54/74 (72.97%), Query Frame = 1
Query: 7 YQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 225
Y+ M+GSL++LT R D+ ++V+ +RFM++P + HL+A KR+LRY++ PD+ + Y RR KL LV +SD+ Y
Sbjct: 121 YKQMVGSLMYLT-ATRPDIMYAVSSISRFMNSPIKFHLLAAKRILRYIKGTPDLGMLYQRRRKLNLVGFSDSDY 193 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17223.4026.1 >prot_H-paniculata_contig17223.4026.1 ID=prot_H-paniculata_contig17223.4026.1|Name=mRNA_H-paniculata_contig17223.4026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp MIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDback to top mRNA from alignment at H-paniculata_contig17223:4534..4758- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17223.4026.1 ID=mRNA_H-paniculata_contig17223.4026.1|Name=mRNA_H-paniculata_contig17223.4026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at H-paniculata_contig17223:4534..4758- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17223:4534..4758- >mRNA_H-paniculata_contig17223.4026.1 ID=mRNA_H-paniculata_contig17223.4026.1|Name=mRNA_H-paniculata_contig17223.4026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig17223:4534..4758- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |