mRNA_H-paniculata_contig17223.4026.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17223.4026.1
Unique NamemRNA_H-paniculata_contig17223.4026.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.100e-13
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    1 KEYQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRRKLELVSYSDASY 225
            K YQ ++GSL+FLT   R+++ ++V    R M+ PT QH++  KR+LRYLR  PD+P+ + R + +L  Y DAS+
Sbjct:  200 KLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASF 274          
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 2.130e-13
Identity = 33/75 (44.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    1 KEYQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRRKLELVSYSDASY 225
            K YQ ++GSL+FLT   R+++ ++V    R M+ PT QH++  KR+LRYLR  PD+P+ + R + +L  Y DAS+
Sbjct: 1183 KLYQGIVGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASF 1257          
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A6H5JN95_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN95_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.840e-13
Identity = 31/75 (41.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:    1 KEYQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRRKLELVSYSDASY 225
            + +QA+ GSL++LTQC R+D+ ++V Q  R  + P Q H+ A K +LRYLR  PD+PI Y + +  L  ++ +S+
Sbjct:  408 QRFQAITGSLLYLTQCTRYDLSYAVHQLTRARANPAQVHMAAPKHLLRYLRGTPDLPIVYKKVQFRLSCFTSSSF 482          
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A438ETV2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ETV2_VITVI)

HSP 1 Score: 71.6 bits (174), Expect = 3.720e-13
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    7 YQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 225
            Y + IG+LI+L  C R D+ FSV   AR+ SAPT++H   +K +LRYLR   D+ + YSR  K +L+ Y+DA Y
Sbjct:  141 YLSAIGALIYLANCTRLDIAFSVNLLARYSSAPTRRHWNGIKHILRYLRGTTDMSLFYSRESKQQLLGYADAGY 214          
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A438BRR6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BRR6_VITVI)

HSP 1 Score: 68.2 bits (165), Expect = 5.260e-13
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    7 YQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 225
            Y + IG+L++L  C R D+ FSV   AR+ SAPT++H   +K +LRYLR   D+ + YSR  K +L+ Y+DA Y
Sbjct:   29 YISAIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHILRYLRRTTDMSLFYSRESKQQLLGYADAGY 102          
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A5AUL4_VITVI (Uncharacterized protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=A5AUL4_VITVI)

HSP 1 Score: 68.2 bits (165), Expect = 1.270e-12
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    7 YQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 225
            Y + IG+L++L  C R D+ FSV   AR+ SAPT++H   +K +LRYLR   D+ + YSR  K +L+ Y+DA Y
Sbjct:   29 YLSAIGALMYLVNCTRPDIAFSVNLLARYNSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGY 102          
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A5B7V5_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B7V5_VITVI)

HSP 1 Score: 70.5 bits (171), Expect = 1.870e-12
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    7 YQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 225
            Y + IG+L++L  C R D+ FSV   AR+ SAPTQ+H   +K +LRYLR   D+ + YSR  K +L+ Y+DA Y
Sbjct:  618 YLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTQRHWNGIKHILRYLRGTTDMSLFYSRESKQQLLGYADAGY 691          
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A6G0XGV6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XGV6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.880e-12
Identity = 28/73 (38.36%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    7 YQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRRKLELVSYSDASY 225
            Y++++GSL++L  C R D+  +V + + ++ +P + H++  KR+LRY++S PD+ +T+ R K+ L+ YSDAS+
Sbjct:  644 YRSIVGSLMYLMVCTRPDIAHAVQRLSLYVHSPREPHMIGAKRLLRYIKSTPDVGLTFCRNKITLMGYSDASW 716          
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: UPI000AE657F6 (hypothetical protein n=1 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI000AE657F6)

HSP 1 Score: 66.6 bits (161), Expect = 1.920e-12
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = 1
Query:    1 KEYQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSR-RKLELVSYSDASY 225
            K+Y+ MIGSL++LT  +R D+ FSV   ARF S P + HL+AVKR+ RYL    D+ + Y R   ++L  YSDA +
Sbjct:   14 KKYRGMIGSLLYLT-ASRPDIMFSVCLCARFQSCPKESHLLAVKRIFRYLSGTIDLGLWYPRGTHIDLTCYSDADF 88          
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A5D3DVM8_CUCME (Putative mitochondrial protein n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3DVM8_CUCME)

HSP 1 Score: 69.7 bits (169), Expect = 2.720e-12
Identity = 34/74 (45.95%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    7 YQAMIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 225
            Y+ M+GSL++LT   R D+ ++V+  +RFM++P + HL+A KR+LRY++  PD+ + Y RR KL LV +SD+ Y
Sbjct:  121 YKQMVGSLMYLT-ATRPDIMYAVSSISRFMNSPIKFHLLAAKRILRYIKGTPDLGMLYQRRRKLNLVGFSDSDY 193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J897_9PHAE2.100e-1344.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KY84_9PHAE2.130e-1344.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JN95_9PHAE2.840e-1341.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A438ETV2_VITVI3.720e-1347.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A438BRR6_VITVI5.260e-1345.95Retrovirus-related Pol polyprotein from transposon... [more]
A5AUL4_VITVI1.270e-1245.95Uncharacterized protein n=2 Tax=Vitis vinifera Tax... [more]
A5B7V5_VITVI1.870e-1247.30Uncharacterized protein n=1 Tax=Vitis vinifera Tax... [more]
A0A6G0XGV6_9STRA1.880e-1238.36Integrase catalytic domain-containing protein n=1 ... [more]
UPI000AE657F61.920e-1247.37hypothetical protein n=1 Tax=Acinetobacter baumann... [more]
A0A5D3DVM8_CUCME2.720e-1245.95Putative mitochondrial protein n=1 Tax=Cucumis mel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17223contigH-paniculata_contig17223:4534..4758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue5.7e-08
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size225
Cds size210
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929358.5877984-CDS-H-paniculata_contig17223:4533..47431622929358.5877984-CDS-H-paniculata_contig17223:4533..4743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17223 4534..4743 -
1691480829.3204255-CDS-H-paniculata_contig17223:4533..47431691480829.3204255-CDS-H-paniculata_contig17223:4533..4743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17223 4534..4743 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929358.598934-UTR-H-paniculata_contig17223:4743..47581622929358.598934-UTR-H-paniculata_contig17223:4743..4758Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17223 4744..4758 -
1691480829.3333333-UTR-H-paniculata_contig17223:4743..47581691480829.3333333-UTR-H-paniculata_contig17223:4743..4758Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17223 4744..4758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17223.4026.1prot_H-paniculata_contig17223.4026.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17223 4534..4743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17223.4026.1

>prot_H-paniculata_contig17223.4026.1 ID=prot_H-paniculata_contig17223.4026.1|Name=mRNA_H-paniculata_contig17223.4026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPD
IPITYSRRKLELVSYSDASY
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mRNA from alignment at H-paniculata_contig17223:4534..4758-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17223.4026.1 ID=mRNA_H-paniculata_contig17223.4026.1|Name=mRNA_H-paniculata_contig17223.4026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=225bp|location=Sequence derived from alignment at H-paniculata_contig17223:4534..4758- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGAGTATCAAGCCATGATAGGGAGTCTCATCTTCCTGACTCAGTGTGC AAGATTCGACATGTGCTTCAGCGTCACCCAAGCAGCACGTTTCATGAGTG CACCAACCCAACAGCACTTGATGGCAGTAAAGCGCATGCTTCGCTACTTG CGGAGCTACCCTGATATTCCAATCACCTACAGTAGAAGAAAATTGGAATT GGTCAGCTATTCTGACGCATCGTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig17223:4534..4758-

>mRNA_H-paniculata_contig17223.4026.1 ID=mRNA_H-paniculata_contig17223.4026.1|Name=mRNA_H-paniculata_contig17223.4026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig17223:4534..4758- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAGGGAGTCTCATCTTCCTGACTCAGTGTGCAAGATTCGACATGTG
CTTCAGCGTCACCCAAGCAGCACGTTTCATGAGTGCACCAACCCAACAGC
ACTTGATGGCAGTAAAGCGCATGCTTCGCTACTTGCGGAGCTACCCTGAT
ATTCCAATCACCTACAGTAGAAGAAAATTGGAATTGGTCAGCTATTCTGA
CGCATCGTACATGATAGGGAGTCTCATCTTCCTGACTCAGTGTGCAAGAT
TCGACATGTGCTTCAGCGTCACCCAAGCAGCACGTTTCATGAGTGCACCA
ACCCAACAGCACTTGATGGCAGTAAAGCGCATGCTTCGCTACTTGCGGAG
CTACCCTGATATTCCAATCACCTACAGTAGAAGAAAATTGGAATTGGTCA
GCTATTCTGACGCATCGTAC
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