mRNA_H-paniculata_contig17220.4024.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig17220.4024.1 vs. uniprot
Match: A0A6H5KRU5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRU5_9PHAE) HSP 1 Score: 358 bits (920), Expect = 6.570e-111 Identity = 224/486 (46.09%), Postives = 280/486 (57.61%), Query Frame = 1
Query: 337 FAFCFNVPTPSLVANTVSGRAITARQVHRSSNQHASPSPRMAIAS-AAEGRRTTG-----------------------VSPIISRDVGGGVLATPPAGESAKAPRLDGKSPDFEVNLGRLISTLQVDYPRIFFETPSFDVYTEDIELFDPTGVAFKGLGNYKRVFATLRFFRQVLMKDANTTFRLTYDWSKQQVRLTWKMVLVLKARPRPVYVDGISAYHVNSDGNAYRHELETVVVNGTPVEPPFAYAWINLPAWVAGNSKNQP----VAIPAPFSNSVVSSPDFFAAAYAAAVATDLPSANLADLQDA-NKVYDTLVGDDLMGTFETEPEVRADFLKALVVLDSVSSMDSSVGSEA----------------------IAEVASSEDEGDAAVAALKENRRVKEKKEGGWFGVQGPT-ECDTSWDCTGGMVCCDFLLVKVCCSNGVKQPKFGDLIPSLVPIPGRGRNENDTPAPKRPPPRNGGS 1638
+A+ F P+ + +++ + R I R+ H SPSPRM+ S AAEG + + P I+R G++A + R DGKSPDFEVNLG++ISTL+ DYPRIFF+ P+FD++TE+IEL DPTGVAF+G+ NYKRVFATLRFFRQ M DA TTFRLTYDWSKQQVR+TW +VL LKAR RP+YVDGISAYH+NSDG A+RH+LETVVVNG VEPPFAYAWINLPAWV+ + +P A+P P A T L + +DA ++D T+ E+R D+++AL +V MD+ SE+ + GGWFG +G C+TSWDCTGGMVCCDF+L+KVCCSNG++QPKFG+LIPSLVPIPGRGRNEND P KR PP G S
Sbjct: 23 YAYLFPTPSGAGLSSVATSRNIEDRK-SSVCRLHGSPSPRMSTMSPAAEGTEASAPTQARGAADLVSSASGAQLASSLIFPSITRQPRPGIIARDGTEDLGMRERDDGKSPDFEVNLGKVISTLREDYPRIFFDPPAFDIFTEEIELRDPTGVAFRGISNYKRVFATLRFFRQTFMNDATTTFRLTYDWSKQQVRVTWNVVLQLKARQRPIYVDGISAYHINSDGLAHRHDLETVVVNGRAVEPPFAYAWINLPAWVSRGAVAKPSGAGAALPTPH-------------AVIGGAPTQLFEQQQGEAEDAVGAMFDAA---------RTDSELRGDYMQAL---STVLMMDTDGVSESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNNAGGWFGSKGAELACETSWDCTGGMVCCDFVLLKVCCSNGIRQPKFGELIPSLVPIPGRGRNENDNP--KRIPPAGGTS 480
BLAST of mRNA_H-paniculata_contig17220.4024.1 vs. uniprot
Match: D8LJ76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ76_ECTSI) HSP 1 Score: 207 bits (528), Expect = 3.150e-56 Identity = 134/346 (38.73%), Postives = 183/346 (52.89%), Query Frame = 1
Query: 598 DFEVNLGRLISTLQVDYPRIFFETPSFDVYTEDIELFDPTGVAFKGLGNYKRVFATLRFFRQVLMKDANTTFRLTYDWSKQQVRLTWKMVLVLKARP---RPVYVDGISAYHVNSDGNAYRHELETVVVNGTPVEPPFAYAWINLPAWVAGNSKNQPVAIPAPFSNSVVSSPDFFAAAYAAAVATDLPSANLADLQDANKVYDTLVGDDLMGT---FETEPEVRADFLKALVVLDSVSSMDSSVGSEAIAEVASSEDEGDAAVAALKENRRVKEKK------EGGW-FGVQGPTECDTSWDCTGGMVCCDFLLVKVCCSNGVKQPKFGDLIPSLVPIPGRGRNEND 1596
+F NLG++I TL+ DY + E +F++YT D++L DP+GV GL YKR+F T RF R+ L+ D +T FRL+YD S+QQVR+TW LVL A P RPV++DG S Y ++++G RH++ET++VNGTPV+PPFA AW+ LP+WV P S S SS D + + N + + + ++ + DL GT F+ VRA + +G W +GP C+TS+DCTGG VCCD ++VK+CCSNGV Q K GDLIPSL+PIPGRGR E D
Sbjct: 21 EFNTNLGKVIDTLREDYATMLDEPLNFEIYTPDLQLRDPSGVVLTGLPAYKRMFGTFRFVRKTLVHDVSTVFRLSYDGSRQQVRITWH--LVLDATPMVVRPVHLDGTSVYGLSTEGLVRRHDVETIIVNGTPVKPPFAQAWMQLPSWVTQGRSGGVAGAPGMISVSS-SSGDVWGG---------MDDFNRSGRRRSGGNFERRIPVDLSGTAMAFQGLAGVRAASITRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMWPIDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELD 354
BLAST of mRNA_H-paniculata_contig17220.4024.1 vs. uniprot
Match: A0A6H5JCH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH5_9PHAE) HSP 1 Score: 191 bits (486), Expect = 8.480e-49 Identity = 154/476 (32.35%), Postives = 213/476 (44.75%), Query Frame = 1
Query: 484 RRTTGVSPIISRDVGGGVLATP-PAGE---SAKAPRLDGKSPDFEVNLGRLISTLQVDYPRIFFETPSFDVYTEDIELFDPTGVAFKGLGNYKRVFATLRFFRQVLMKDANTTFRLTYDWSKQQ---------------------------------------VRLTWKMVLVLKARP---RPVYVDGISAYHVNSDGNAYRHELETVVVNGTPVEPPFAYAWINLPAWVAGNSKNQPVAIPAPFSNSVVSSPDFFAAAYAAAVATDLPSANLADLQDANKVYDTLVGDDLMGT---FETEPEVRADFL----KALVVLDSVSSMDSSVGSEA---------------------------------------------------IAEVASSEDEGDAAVAALKENRRVKEKKEGGW-FGVQGPTECDTSWDCTGGMVCCDFLLVKVCCSNGVKQPKFGDLIPSLVPIPGRGRNEND 1596
RRT G + S+ V V +P PAGE K + + +F NLG++I TL+ DYP + E +FD+YT D++L DP+GV GL YKR+F T RF R+ L+ D +T FRL+YD S+QQ VR+TW LVL A P RPV++DG S Y ++++G RH+LET++VNGTPV+PPFA AW+ LP+WV S V +P + + + V ++ + + + K ++ + DL GT F+ EVRA + K L+ +VG +A +G W +GP C+TS+DCTGG VCCD ++VK+CCSNGV Q K GDLIPSL+PIPGRGR E D
Sbjct: 67 RRTCGAASQASQGVFPSVARSPMPAGEIYEGEKKEKEKREQAEFNTNLGKVIDTLREDYPTMLDEPLNFDIYTPDLQLRDPSGVILTGLPAYKRMFGTFRFVRKTLVHDVSTVFRLSYDGSRQQDDEQLLVHPCEMQPWTGRNDWPSVIGSVGNNAPSSRGRVVRVTWH--LVLDATPMVARPVHLDGTSVYGLSTEGLVRRHDLETIIVNGTPVKPPFAQAWMQLPSWVTQGR-----------SGGVAGAPGMTSVSSSGGVRGEIDDFDRSGRRSGGK-FERRIPMDLSGTAMAFQGLAEVRAASITRRRKGLLA---------AVGFDASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGMWPIDYKGPLACETSFDCTGGYVCCDLVVVKICCSNGVMQRKPGDLIPSLIPIPGRGRTELD 519
BLAST of mRNA_H-paniculata_contig17220.4024.1 vs. uniprot
Match: A0A836CIZ0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIZ0_9STRA) HSP 1 Score: 157 bits (398), Expect = 6.020e-39 Identity = 113/330 (34.24%), Postives = 145/330 (43.94%), Query Frame = 1
Query: 589 KSPDFEVNLGRLISTLQVDYPRIFFETPSFDVYTEDIELFDPTGVAFKGLGNYKRVFATLRFFRQVLMKDANTTFRLTYDWSKQQVRLTWKMVLVLKARP-RPVYVDGISAYHVNSDGNAYRHELETVVVNGTPVEPPFAY-AWINLPAWVAGNSKNQPVAIPAPFSNSVVSSPDFFAAAYAAAVATDLPSANLADLQDANKVYDTLVGDDLMGTFETEPEVRADFLKALVVLDSVSSMDSSVGSEAIAEVASSEDEGDAAVAALKENRRVKEKKEGGWFGVQGPTECDTSWDCTGGMVCCDFLLVKVCCSNGVKQPKFGDLIPSLVPIP 1572
++PDFE NLG++I TL+ DYP + E + +YT+DI + DP+GV FKG+G YKR+FATLRFFR + +T FR+TYDW++Q+VR+ W M L KAR PV+VD IS YH+N +G H+LET++V A + L WV AAA A A +R D SS G GDA K R W V P+ C+ SWDC M CCDF L KVCC+ G+ P P LVPIP
Sbjct: 36 RNPDFEPNLGKVIDTLRSDYPELLNEPLDYSIYTDDITVKDPSGVEFKGIGTYKRLFATLRFFRHTFVDTVDTRFRVTYDWARQRVRVNWHMALSFKARAGHPVFVDCISVYHINDEGFVSAHDLETIMVXXXXXXXXXXXXAMMGL--WVRSEK-------------------GVGAAAAATTTAMSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAAALRGD---------------SSGG-------------GDAGKDRSKAPRLA-------WPKVDLPSGCEDSWDCESPMTCCDFALFKVCCNQGMGSPVTE---PRLVPIP 306
BLAST of mRNA_H-paniculata_contig17220.4024.1 vs. uniprot
Match: A0A7S4A516_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A516_9STRA) HSP 1 Score: 152 bits (384), Expect = 1.270e-36 Identity = 103/351 (29.34%), Postives = 158/351 (45.01%), Query Frame = 1
Query: 598 DFEVNLGRLISTLQVDYPRIFFETPSFDVYTEDIELFDPTGVAFKGLGNYKRVFATLRFFRQVLMKDANTTFRLTYDWSKQQVRLTWKMVLVLKARPRPVYVDGISAYHVNSDGNAYRHELETVVVNGTPVEPPFAYAWINLPAWV-AGNSKNQPVAIPAPFSNSVVSSPDFFAAAYAAAVATDLPSANLADLQDANKVYDTLVGDDLMGTFETEPEVRADFLKALVVLDSVSSMDSSVGSEAIAEVASSEDEGDAAVAALKENRRVKEKKEGGWFGVQGPTECDTSWDCTGGMVCCDFLLVKVCCSNGVKQPKFGDLIPSLVPIPGRGRNENDTPAPKRPPPRNGGSSNG 1647
+FE+NLGR I L+ D P S+D+Y ++++L DP+GV +GL NYK+ F +R FR+V++ + TF+L YDWSK+ +++TW + + YVD SA+H++ G ++H ++ V V G P+ PP++ W+ +V AG +P A+P +F E +D + +VL S S S+ E +A + K+ R KEKK+ P +C+ WDC M CCDF++ K+CC G+ P F + P LVPIP P + PP GG G
Sbjct: 79 EFELNLGRAIDALRSDVPAFADRELSWDIYADNVQLADPSGVQTRGLQNYKQFFGVIRMFRRVMIDKVDITFKLRYDWSKKIIKVTWYSKWYARGSSKAAYVDATSAFHLDEQGKIFKHVVDRVQVGGRPLSPPYSVGWLAFREYVLAGLDGPRPAAVP---------------------------------------------------SFGFE---ASDIGQDALVLMSAMSASXXXXXXXXXXXXXSDGESEAPPPSKKKAPRNKEKKQKRKL---LPGQCEGMWDCDSPMECCDFVMFKMCCRGGLGIPAFLEPAPVLVPIP--------VPVERGPPGMPGGRGGG 364
BLAST of mRNA_H-paniculata_contig17220.4024.1 vs. uniprot
Match: A0A0M0JBU2_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JBU2_9EUKA) HSP 1 Score: 128 bits (322), Expect = 3.420e-28 Identity = 110/344 (31.98%), Postives = 151/344 (43.90%), Query Frame = 1
Query: 601 FEVNLGRLISTLQVDYPRIFFETPSFDVYTEDIELFDPTGVAFKGLGNYKRVFATLRFFRQVLMKDANTTFRLTYDWSKQQVRLTWKMVL-----------VLKARPRPVYVDGISAYHVNSDGNAYRHELETVVVNGT-PVEPPFAYAWINLPAWVAGNSKNQPVAIPAPFSNSVVSSPDFFAAAYAAAVATDLPSANLADLQDANKVYDTLVGDDLMGTFETEPEVRADFLKALVVLDSVSSMDSSVGSEAIAEVASSEDEGDAAVAA-LKENRRVKEKKEGG--WFGVQGPTECDTSWDCTGGMVCCDFLLVKVCCSNGVKQPKF-----GDLIPSLVPIP 1572
F++N GR I L+ DYPR+F E P ++T++IEL DP+G G Y+RVF LRF R+ M+DA RL D + +R+ W L ++ P V++DG+S Y ++ DG +H LE +V+ G P+ P A+ AW A A+P FF LAD T G GT TE E D +A + S+ E E A+ E DAA L++ R K + G FG+ GP C+TS+DC MVCCD L VCC+ G+ P G L +PIP
Sbjct: 79 FKLNQGRAIDVLRHDYPRLFTERPDMSIFTDNIELHDPSGKRLAGKKQYERVFDALRFLRRTTMQDAQVGIRLVAD--DKSIRVRWNAKLWMRDPATGLTTLVNGEPALVHIDGVSVYDLDKDGLIRQHRLENIVLTGQEPLATPIQLAF----AWPATGYATPQAAVP------------FFQP--------------LADALLNFGFSSTSSGASEAGTEGTESE---DGRRAAPTRRAPPPQASASDDETPLERAARERAEDAAKQQRLRDLRTPKTAPKSGVDLFGLTGPQSCETSYDCDAPMVCCDLLFATVCCTGGLLIPTADRRMQGSLQRQAIPIP 387
BLAST of mRNA_H-paniculata_contig17220.4024.1 vs. uniprot
Match: A0A7S1ZVV7_9STRA (Hypothetical protein (Fragment) n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZVV7_9STRA) HSP 1 Score: 116 bits (290), Expect = 2.160e-24 Identity = 59/146 (40.41%), Postives = 87/146 (59.59%), Query Frame = 1
Query: 598 DFEVNLGRLISTLQVDYPRIFFETPSFDVYTEDIELFDPTGVAFKGLGNYKRVF----ATLRFFRQVLMKDANTTFRLTYDWSKQQVRLTWKMVLVLKARPRPVY--------VDGISAYHVNSDGNAYRHELETVVVNGTPVEPP 999
+FE+NLGR + L+ DYP + P F++Y +DIE+ DP+GV GLGNY++ F A + FF +++ TFRL YD ++ +R++W LV PR +Y VDGIS Y +N +G RH+LE ++VN PV+ P
Sbjct: 98 EFEINLGRAVDRLRKDYPDMLVANPDFEIYHDDIEVIDPSGVKLHGLGNYEKAFSFIHAVINFF--YCKEESGLTFRLHYDAERRNIRVSWNAFLV----PRTIYGGVRNKLHVDGISVYELNREGIVMRHKLERILVNNVPVKEP 237
BLAST of mRNA_H-paniculata_contig17220.4024.1 vs. uniprot
Match: A0A8J5XCD4_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XCD4_DIALT) HSP 1 Score: 108 bits (269), Expect = 7.720e-22 Identity = 55/143 (38.46%), Postives = 82/143 (57.34%), Query Frame = 1
Query: 598 DFEVNLGRLISTLQVDYPRIFFETPSFDVYTEDIELFDPTGVAFKGLGNYKRVFATLRFFRQVLMKDANTTFRLTY-DWSKQQVRLTWKMVLVLKARP-RPVYVDGISAYHVNSDGNAYRHELETVVVNGTPVEPPFAYAWIN 1020
+F +N+G++I TLQ DYP +F ++P F ++ IEL DP+GV+ +GL Y+ F LR R M A ++ Y W +VR+ W + P R ++DG+SAY ++ G RH L+ ++VNG VE PF WIN
Sbjct: 71 EFRLNVGKVIDTLQTDYPVLFEQSPDFSIFESCIELTDPSGVSIRGLSMYRSCFTLLRLMRYT-MASAEMKCKVCYAGWDPYKVRVRWNLAFSSALSPGRTYFIDGVSAYTLSERGLVRRHSLDNIIVNGREVEQPFL-TWIN 211
BLAST of mRNA_H-paniculata_contig17220.4024.1 vs. uniprot
Match: B7G7A7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G7A7_PHATC) HSP 1 Score: 109 bits (272), Expect = 2.710e-21 Identity = 104/379 (27.44%), Postives = 173/379 (45.65%), Query Frame = 1
Query: 598 DFEVNLGRLISTLQVDYPRIFFETPSFDVYTEDIELFDPTGVAFKGLGNYKRVFATLRFFRQVLMKDANT--TFRLTYDWSKQQVRLTWKMVLVLKARPRPV--------YVDGISAYHVNSDGNAYRHELETVVVNGTPVEPPFAYA-------WINLPAWVAG---------NSKNQPVAIPAPFSNSVVSSPDFFAAAYAAAVATDLPSANLADLQDANKVYDTLVGDDLMGTFETEPEVRADF-LKALVVLDSVSSMDSSVGSEAIAEVASSEDEGDAAVAALKENRRVKEKKEGGWF-----GVQGPTECDTSWDCTGGMVCCDFLLVKVCCSNGVKQPKFGDLIPSLVPIP---GRGRNENDTPAPKRPPPRN 1629
+FE+++G+ + TL+ DYP+I + P F +Y +DIE+ DP+GV G+ YK F L + + + TFRL YD ++Q +R+ W +V PR + YVDGIS Y +N DG+ H +E +++N TPV+P +++P+++ N+ NQ V P F+ + A + + P + + +AN++ D E + + R F LK L + ++ +A +VA+ KEK + F G+ T C++++DC +VCCDF V+ CCS+G + + +L+P+P G G + D R PPRN
Sbjct: 131 EFELHVGKALDTLRNDYPKILTDQPDFSIYHKDIEVVDPSGVKVHGINTYKGSFRLLHALVAFIYCPSRSGLTFRLCYDKARQAIRIHWNAQVV----PREIFGGSRTTLYVDGISVYEMNRDGDIVAHRIEQLLMNNTPVQPKEGVIAALRQEHGVSVPSFIQNMDSRSGNHNNNNNQLVPFQTVNPWERHREPQLFSLSAMEATSNENPPTDNGN-NNANELLHAQYPDLDWPALEAKNKSRKKFGLKPLTPEEFLALATEIQKMDAEQQVAAQMQRXX-----XXXXXXXKEKDKNSLFNKLFGGLLEDT-CESNYDCERPLVCCDFGFVQKCCSSGSRVVDLRGQL-ALIPVPADVGYGPGDLD-----RNPPRN 492
BLAST of mRNA_H-paniculata_contig17220.4024.1 vs. uniprot
Match: A0A7S0J6I1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0J6I1_9EUKA) HSP 1 Score: 104 bits (260), Expect = 8.820e-21 Identity = 57/173 (32.95%), Postives = 92/173 (53.18%), Query Frame = 1
Query: 538 LATPPAGESAKAPRLDGKSPDFEVNLGRLISTLQVDYPRIFFETPSFDVYTEDIELFDPTGVAFK-GLGNYKRVFATLRFFRQVLMKDANTTFRLTYDWSKQQVRLTWKMVLVLK---------ARPRPVYVDGISAYHVNSDGNAYRHELETVVVNGTPVEPPFAYAWINLP 1026
LA PPA A + G +++N G+ I +L+ DYPRI P ++T+ +EL+DP+G + G G Y +VF LRF RQ + + T+RL + + +R+ W L ++ A P + +DG+SAY ++ +G +H LE +V++G P +AW LP
Sbjct: 64 LAVPPAFPKLAAKHVYGLPNSYQLNQGKAIDSLRHDYPRILTHEPDLSIFTDGVELYDPSGNRLRSGRGEYAQVFTALRFLRQTMAVGSEVTYRLVV--ANEVIRVRWSAKLYMRPMVVIPGRSAEPPLLQLDGVSAYELDDEGWIRQHRLENIVLSGPSTGVPAEFAWTVLP 234 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17220.4024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17220.4024.1 >prot_H-paniculata_contig17220.4024.1 ID=prot_H-paniculata_contig17220.4024.1|Name=mRNA_H-paniculata_contig17220.4024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=477bp MGDGGVVSGVLKGSRAISAVFLATACCSSLWSAQAFAFCFNVPTPSLVANback to top mRNA from alignment at H-paniculata_contig17220:938..4952- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17220.4024.1 ID=mRNA_H-paniculata_contig17220.4024.1|Name=mRNA_H-paniculata_contig17220.4024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4015bp|location=Sequence derived from alignment at H-paniculata_contig17220:938..4952- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17220:938..4952- >mRNA_H-paniculata_contig17220.4024.1 ID=mRNA_H-paniculata_contig17220.4024.1|Name=mRNA_H-paniculata_contig17220.4024.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2862bp|location=Sequence derived from alignment at H-paniculata_contig17220:938..4952- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |