prot_H-paniculata_contig1720.4012.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig1720.4012.1
Unique Nameprot_H-paniculata_contig1720.4012.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length162
Homology
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BLAST of mRNA_H-paniculata_contig1720.4012.1 vs. uniprot
Match: R1BI14_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BI14_EMIHU)

HSP 1 Score: 56.6 bits (135), Expect = 8.230e-7
Identity = 23/36 (63.89%), Postives = 32/36 (88.89%), Query Frame = 0 
Query:    3 TVGGLKPDIISYNSAITSCEKSGWWKKAMSLLREMP 38
            T  G++PD+ISYN+AI++CEK+G W+KA+SLL EMP
Sbjct:    2 TAAGVRPDVISYNAAISACEKAGQWEKAVSLLCEMP 37
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1720.4012.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R1BI14_EMIHU8.230e-763.89Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 83..105
e-value: 3.8E-6
score: 24.7
coord: 49..81
e-value: 3.6E-6
score: 24.8
coord: 12..45
e-value: 2.5E-5
score: 22.2
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 80..127
e-value: 1.8E-9
score: 37.6
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 49..74
e-value: 8.9E-5
score: 22.5
coord: 12..40
e-value: 3.3E-6
score: 27.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 116..150
score: 7.925
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 10..40
score: 9.624
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 81..115
score: 10.183
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 46..80
score: 9.679
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..107
e-value: 2.4E-31
score: 111.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 108..162
e-value: 3.4E-5
score: 25.4
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 6..157
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..21
score: 5.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1720contigH-paniculata_contig1720:20819..21498 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1720.4012.1mRNA_H-paniculata_contig1720.4012.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig1720 20819..21498 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig1720.4012.1 ID=prot_H-paniculata_contig1720.4012.1|Name=mRNA_H-paniculata_contig1720.4012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MKTVGGLKPDIISYNSAITSCEKSGWWKKAMSLLREMPQKRNLTPIVRSY
NSAITACGNGGQWEDVLRLLREMPGAELNPNTVTYNTVITACAKAGEWKQ
ALSLFMKNWQVGLEHDVVSFRAAIGACRGAGPWEMALDILRQKPSRGVKV
NAFSYSQVIGVC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf