mRNA_H-paniculata_contig1720.4012.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1720.4012.1
Unique NamemRNA_H-paniculata_contig1720.4012.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1720.4012.1 vs. uniprot
Match: R1BI14_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BI14_EMIHU)

HSP 1 Score: 56.6 bits (135), Expect = 8.230e-7
Identity = 23/36 (63.89%), Postives = 32/36 (88.89%), Query Frame = 1 
Query:    7 TVGGLKPDIISYNSAITSCEKSGWWKKAMSLLREMP 114
            T  G++PD+ISYN+AI++CEK+G W+KA+SLL EMP
Sbjct:    2 TAAGVRPDVISYNAAISACEKAGQWEKAVSLLCEMP 37
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1720.4012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R1BI14_EMIHU8.230e-763.89Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1720contigH-paniculata_contig1720:20819..21498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPentatricopeptide repeat
Ec32 orthologEc-03_002340.1
Exons2
Model size486
Cds size486
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.1775749-CDS-H-paniculata_contig1720:20818..209421622929357.1775749-CDS-H-paniculata_contig1720:20818..20942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1720 20819..20942 +
1691480828.699366-CDS-H-paniculata_contig1720:20818..209421691480828.699366-CDS-H-paniculata_contig1720:20818..20942Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1720 20819..20942 +
1622929357.1990418-CDS-H-paniculata_contig1720:21136..214981622929357.1990418-CDS-H-paniculata_contig1720:21136..21498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1720 21137..21498 +
1691480828.7098367-CDS-H-paniculata_contig1720:21136..214981691480828.7098367-CDS-H-paniculata_contig1720:21136..21498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1720 21137..21498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1720.4012.1prot_H-paniculata_contig1720.4012.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1720 20819..21498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1720.4012.1

>prot_H-paniculata_contig1720.4012.1 ID=prot_H-paniculata_contig1720.4012.1|Name=mRNA_H-paniculata_contig1720.4012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
MKTVGGLKPDIISYNSAITSCEKSGWWKKAMSLLREMPQKRNLTPIVRSY
NSAITACGNGGQWEDVLRLLREMPGAELNPNTVTYNTVITACAKAGEWKQ
ALSLFMKNWQVGLEHDVVSFRAAIGACRGAGPWEMALDILRQKPSRGVKV
NAFSYSQVIGVC
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mRNA from alignment at H-paniculata_contig1720:20819..21498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1720.4012.1 ID=mRNA_H-paniculata_contig1720.4012.1|Name=mRNA_H-paniculata_contig1720.4012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=680bp|location=Sequence derived from alignment at H-paniculata_contig1720:20819..21498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGACAGTGGGCGGACTTAAACCGGATATCATTAGCTACAACTCGGC
CATTACATCATGCGAGAAAAGTGGTTGGTGGAAAAAAGCTATGTCGCTGT
TAAGAGAGATGCCGCAGAAGAGAAGTGCTCCGGACGTGGTGAGCTACAAT
TCGGCAATAGAAACTTGCGGTAAGGGTGAGGAATGAACTAAGGCATTGGA
TATTTTGAACGAAATGAAAACACTAGGTATCGAACCGACGATCATAAGCT
AAACGTCGGTTATAGTAGCATGCAGGGCTGATGGCTAGTGGCAACCGGCT
TTGAACACATTCAGGGAGATCTCACGCCCATTGTCCGGAGCTATAATTCG
GCTATCACGGCGTGTGGGAACGGTGGTCAATGGGAAGACGTATTGCGTCT
TTTACGCGAGATGCCAGGAGCGGAGCTCAACCCTAACACCGTGACCTACA
ACACAGTCATCACTGCGTGCGCAAAGGCCGGTGAGTGGAAGCAGGCGCTG
TCTCTATTCATGAAAAATTGGCAAGTGGGTCTAGAGCACGATGTGGTCAG
CTTCAGAGCAGCTATCGGAGCGTGCCGAGGCGCCGGGCCCTGGGAAATGG
CGCTTGATATATTGAGGCAGAAGCCGTCGAGGGGCGTCAAGGTGAATGCC
TTTAGTTACAGCCAGGTCATTGGAGTGTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig1720:20819..21498+

>mRNA_H-paniculata_contig1720.4012.1 ID=mRNA_H-paniculata_contig1720.4012.1|Name=mRNA_H-paniculata_contig1720.4012.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig1720:20819..21498+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGACAGTGGGCGGACTTAAACCGGATATCATTAGCTACAACTCGGC
CATTACATCATGCGAGAAAAGTGGTTGGTGGAAAAAAGCTATGTCGCTGT
TAAGAGAGATGCCGCAGAAGAGAAATGAAGACAGTGGGCGGACTTAAACC
GGATATCATTAGCTACAACTCGGCCATTACATCATGCGAGAAAAGTGGTT
GGTGGAAAAAAGCTATGTCGCTGTTAAGAGAGATGCCGCAGAAGAGAAAT
CTCACGCCCATTGTCCGGAGCTATAATTCGGCTATCACGGCGTGTGGGAA
CGGTGGTCAATGGGAAGACGTATTGCGTCTTTTACGCGAGATGCCAGGAG
CGGAGCTCAACCCTAACACCGTGACCTACAACACAGTCATCACTGCGTGC
GCAAAGGCCGGTGAGTGGAAGCAGGCGCTGTCTCTATTCATGAAAAATTG
GCAAGTGGGTCTAGAGCACGATGTGGTCAGCTTCAGAGCAGCTATCGGAG
CGTGCCGAGGCGCCGGGCCCTGGGAAATGGCGCTTGATATATTGAGGCAG
AAGCCGTCGAGGGGCGTCAAGGTGAATGCCTTTAGTTACAGCCAGGTCAT
TGGAGTGTGTATCTCACGCCCATTGTCCGGAGCTATAATTCGGCTATCAC
GGCGTGTGGGAACGGTGGTCAATGGGAAGACGTATTGCGTCTTTTACGCG
AGATGCCAGGAGCGGAGCTCAACCCTAACACCGTGACCTACAACACAGTC
ATCACTGCGTGCGCAAAGGCCGGTGAGTGGAAGCAGGCGCTGTCTCTATT
CATGAAAAATTGGCAAGTGGGTCTAGAGCACGATGTGGTCAGCTTCAGAG
CAGCTATCGGAGCGTGCCGAGGCGCCGGGCCCTGGGAAATGGCGCTTGAT
ATATTGAGGCAGAAGCCGTCGAGGGGCGTCAAGGTGAATGCCTTTAGTTA
CAGCCAGGTCATTGGAGTGTGT
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