mRNA_H-paniculata_contig17197.4009.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17197.4009.1
Unique NamemRNA_H-paniculata_contig17197.4009.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: D8LF19_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF19_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 3.100e-69
Identity = 111/118 (94.07%), Postives = 116/118 (98.31%), Query Frame = 1
Query:   10 GGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQV 363
            GGSPKYPQIKAI+SGVQVVIATPGRLNDIM+MGKINM+NVMTLALDEADRMLDMGFEPQIRTIIDAMP+KRQTLFFTATWPKEVQRLARDFV NPVHITVGDAGKLNANKSITQHI +
Sbjct:  257 GGSPKYPQIKAIQSGVQVVIATPGRLNDIMEMGKINMTNVMTLALDEADRMLDMGFEPQIRTIIDAMPAKRQTLFFTATWPKEVQRLARDFVTNPVHITVGDAGKLNANKSITQHIHI 374          
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A2U1QIF9_ARTAN (DNA/RNA helicase, DEAD/DEAH box type, N-terminal n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QIF9_ARTAN)

HSP 1 Score: 170 bits (431), Expect = 3.690e-47
Identity = 77/129 (59.69%), Postives = 102/129 (79.07%), Query Frame = 1
Query:    1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQVFSVFSNTR 387
            CL GG+PK PQ++ +E G  +V+ATPGRLNDI++M K+N+S V  L LDEADRMLDMGFEPQIR II A+P++RQTL +TATWPKEV+++A DF+ NPV + +G+  +L ANKSITQH++V +     R
Sbjct:  269 CLYGGAPKGPQLRELEHGADIVVATPGRLNDILEMKKVNLSQVSYLVLDEADRMLDMGFEPQIRKIISAVPTRRQTLMYTATWPKEVRKIAADFLVNPVQVNIGNVDELVANKSITQHVEVLTYMEKNR 397          
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A176WJI7_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WJI7_MARPO)

HSP 1 Score: 170 bits (431), Expect = 3.730e-47
Identity = 75/129 (58.14%), Postives = 105/129 (81.40%), Query Frame = 1
Query:    1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQVFSVFSNTR 387
            C+ GG+PK PQ++ I+ GV +++ATPGRLND+++MG +N+ +V  L LDEADRMLDMGFEPQIR I+D MP +RQTL +TATWPKEV+++ARD + +PV + VG++ +L+ANKSITQH+++ S  S  R
Sbjct:  335 CVCGGAPKGPQLRDIQRGVDIIVATPGRLNDLLEMGAVNLQHVSYLVLDEADRMLDMGFEPQIRAIVDQMPVQRQTLMYTATWPKEVRKIARDLMTDPVQVNVGNSDQLSANKSITQHVEIVSRSSKER 463          
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A446N8Q1_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446N8Q1_TRITD)

HSP 1 Score: 162 bits (410), Expect = 1.420e-46
Identity = 74/129 (57.36%), Postives = 99/129 (76.74%), Query Frame = 1
Query:    1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQVFSVFSNTR 387
            CL GG+PK PQ++ +E G  +V+ATPGRLNDI++MGK+++  V  L LDEADRMLDMGFEPQIR I+  +  KRQTL FTATWP+EV+++A D + NPV + +G+  +L ANKSITQH++V + F   R
Sbjct:  131 CLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMGKVSLRQVAYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPREVRKIASDLLTNPVQVNIGNTDELVANKSITQHVEVTTSFEKGR 259          
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A7J8X8I5_GOSAI (Uncharacterized protein (Fragment) n=1 Tax=Gossypium aridum TaxID=34290 RepID=A0A7J8X8I5_GOSAI)

HSP 1 Score: 162 bits (410), Expect = 3.330e-46
Identity = 74/123 (60.16%), Postives = 99/123 (80.49%), Query Frame = 1
Query:    1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQVFS 369
            CL GG+PK PQ++ IE GV +V+ATPGRLNDI++M +I++  V  L LDEADRMLDMGFEPQIR I+  +PS+RQTL +TATWPKEV+++A D + NPV + +G+  +L ANKSITQ+++V S
Sbjct:   92 CLYGGAPKGPQLREIERGVDIVVATPGRLNDILEMSRISLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPSRRQTLMYTATWPKEVRKIAADLLGNPVQVNIGNIDELVANKSITQYVEVLS 214          
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A7J9N0N9_GOSSC (Uncharacterized protein n=1 Tax=Gossypium schwendimanii TaxID=34291 RepID=A0A7J9N0N9_GOSSC)

HSP 1 Score: 162 bits (410), Expect = 4.550e-46
Identity = 74/123 (60.16%), Postives = 99/123 (80.49%), Query Frame = 1
Query:    1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQVFS 369
            CL GG+PK PQ++ IE GV +V+ATPGRLNDI++M +I++  V  L LDEADRMLDMGFEPQIR I+  +PS+RQTL +TATWPKEV+++A D + NPV + +G+  +L ANKSITQ+++V S
Sbjct:   46 CLYGGAPKGPQLREIERGVDIVVATPGRLNDILEMSRISLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPSRRQTLMYTATWPKEVRKIAADLLGNPVQVNIGNIDELVANKSITQYVEVLS 168          
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A7S0BVZ7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVZ7_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.180e-45
Identity = 73/121 (60.33%), Postives = 97/121 (80.17%), Query Frame = 1
Query:    1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQV 363
            CL GG+PKYPQI+A+  GV  VIATPGR+ND+++MG+ ++S +  + LDEADRMLDMGFEPQIR++++ +P KRQTL F+ATWPKE+QRLA DF+  P+ + VGD   LNANK I Q+I +
Sbjct:  283 CLYGGAPKYPQIQALNRGVDFVIATPGRINDLIEMGRCDLSAIQFVVLDEADRMLDMGFEPQIRSVLEHVPEKRQTLLFSATWPKEIQRLAYDFLNTPIQVNVGDVNSLNANKDIKQNIHI 403          
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A161Y065_DAUCS (Uncharacterized protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161Y065_DAUCS)

HSP 1 Score: 166 bits (420), Expect = 1.240e-45
Identity = 72/121 (59.50%), Postives = 99/121 (81.82%), Query Frame = 1
Query:    1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQV 363
            CL GG+PK PQ+K +E GV +V+ATPGRLNDI+QMG++N+  +  + LDEADRMLDMGFEPQIR I+  +P++RQTL +TATWPKEV+++A D + NPV + +G+  +L ANKSITQH+++
Sbjct:  278 CLYGGAPKGPQLKDLERGVDIVVATPGRLNDILQMGRVNLGQISYMVLDEADRMLDMGFEPQIRKIVKEIPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHVEI 398          
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A317YGL3_MAIZE (DEAD-box ATP-dependent RNA helicase 14 n=2 Tax=Zea mays TaxID=4577 RepID=A0A317YGL3_MAIZE)

HSP 1 Score: 158 bits (400), Expect = 1.630e-45
Identity = 71/129 (55.04%), Postives = 98/129 (75.97%), Query Frame = 1
Query:    1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQVFSVFSNTR 387
            CL GG+PK PQ++ +E G  +V+ATPGRLNDI++M ++++  V  L LDEAD MLDMGFEPQIR I+  +PSKRQTL +TATWP+EV+++A D + NPV + +G+  +L ANKSITQH++V      +R
Sbjct:  106 CLYGGAPKGPQLRELERGADIVVATPGRLNDILEMNRVSLHQVSYLVLDEADCMLDMGFEPQIRKIVKQIPSKRQTLMYTATWPREVRKIASDLLANPVQVNIGNTDQLVANKSITQHVEVIPHMDKSR 234          
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A1D6NMQ0_MAIZE (DEAD-box ATP-dependent RNA helicase 14 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6NMQ0_MAIZE)

HSP 1 Score: 158 bits (399), Expect = 1.780e-45
Identity = 71/123 (57.72%), Postives = 96/123 (78.05%), Query Frame = 1
Query:    1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQVFS 369
            CL GG+PK PQ++ ++ GV VV+ATPGRLNDI++M K+++  V  L LDEADRMLDMGFEPQIR I+  +P +RQTL +TATWPKEV+R+A D + +PV +T+G    L AN SITQH+++ +
Sbjct:   71 CLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRKVSLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPHRRQTLMYTATWPKEVRRIADDLLVHPVQVTIGSVDSLVANSSITQHVEIIT 193          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF19_ECTSI3.100e-6994.07DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
A0A2U1QIF9_ARTAN3.690e-4759.69DNA/RNA helicase, DEAD/DEAH box type, N-terminal n... [more]
A0A176WJI7_MARPO3.730e-4758.14Uncharacterized protein n=2 Tax=Marchantia polymor... [more]
A0A446N8Q1_TRITD1.420e-4657.36Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
A0A7J8X8I5_GOSAI3.330e-4660.16Uncharacterized protein (Fragment) n=1 Tax=Gossypi... [more]
A0A7J9N0N9_GOSSC4.550e-4660.16Uncharacterized protein n=1 Tax=Gossypium schwendi... [more]
A0A7S0BVZ7_9STRA1.180e-4560.33Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A161Y065_DAUCS1.240e-4559.50Uncharacterized protein n=2 Tax=Daucus carota subs... [more]
A0A317YGL3_MAIZE1.630e-4555.04DEAD-box ATP-dependent RNA helicase 14 n=2 Tax=Zea... [more]
A0A1D6NMQ0_MAIZE1.780e-4557.72DEAD-box ATP-dependent RNA helicase 14 n=1 Tax=Zea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17197contigH-paniculata_contig17197:5064..5468 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.5
Seed ortholog evalue7.5e-57
Seed eggNOG ortholog2880.D8LF19
KEGG rclassRC02795
KEGG koko:K02325,ko:K12823
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03040,ko03410,ko03420,ko05166,ko05202,ko05205,map00230,map00240,map01100,map03030,map03040,map03410,map03420,map05166,map05202,map05205
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0004672,GO:0004674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0006139,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009628,GO:0009651,GO:0009987,GO:0010501,GO:0016070,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016773,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019538,GO:0031974,GO:0031981,GO:0034641,GO:0036211,GO:0042623,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046777,GO:0050896,GO:0070013,GO:0070035,GO:0071704,GO:0090304,GO:0140096,GO:0140098,GO:1901360,GO:1901564
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0331@2759
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-21_006390.1
EC2.7.7.7,3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03032,ko03041,ko03400
Exons1
Model size405
Cds size405
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929356.8705115-CDS-H-paniculata_contig17197:5063..54681622929356.8705115-CDS-H-paniculata_contig17197:5063..5468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17197 5064..5468 -
1691480828.57321-CDS-H-paniculata_contig17197:5063..54681691480828.57321-CDS-H-paniculata_contig17197:5063..5468Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17197 5064..5468 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17197.4009.1prot_H-paniculata_contig17197.4009.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17197 5064..5468 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17197.4009.1

>prot_H-paniculata_contig17197.4009.1 ID=prot_H-paniculata_contig17197.4009.1|Name=mRNA_H-paniculata_contig17197.4009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDE
ADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVH
ITVGDAGKLNANKSITQHIQVFSVFSNTRTKLTVL
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mRNA from alignment at H-paniculata_contig17197:5064..5468-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17197.4009.1 ID=mRNA_H-paniculata_contig17197.4009.1|Name=mRNA_H-paniculata_contig17197.4009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig17197:5064..5468- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCTTGCAGGCGGCTCCCCCAAGTACCCGCAGATCAAGGCGATCGAAAG TGGTGTACAGGTGGTGATCGCTACTCCCGGCCGTCTGAATGACATCATGC AGATGGGCAAGATCAACATGTCTAACGTAATGACTCTCGCTCTCGACGAG GCAGATAGGATGTTGGACATGGGCTTCGAGCCTCAGATTCGCACCATCAT CGACGCCATGCCGTCTAAGCGCCAGACGTTGTTCTTCACCGCCACCTGGC CGAAGGAGGTGCAGCGACTGGCCCGCGATTTCGTGCAAAATCCGGTGCAC ATCACGGTGGGAGATGCGGGGAAACTGAACGCCAACAAGAGCATCACTCA ACACATCCAGGTATTTAGCGTTTTCTCCAATACAAGGACAAAATTGACCG TATTA
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Coding sequence (CDS) from alignment at H-paniculata_contig17197:5064..5468-

>mRNA_H-paniculata_contig17197.4009.1 ID=mRNA_H-paniculata_contig17197.4009.1|Name=mRNA_H-paniculata_contig17197.4009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig17197:5064..5468- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCTTGCAGGCGGCTCCCCCAAGTACCCGCAGATCAAGGCGATCGAAAG
TGGTGTACAGGTGGTGATCGCTACTCCCGGCCGTCTGAATGACATCATGC
AGATGGGCAAGATCAACATGTCTAACGTAATGACTCTCGCTCTCGACGAG
GCAGATAGGATGTTGGACATGGGCTTCGAGCCTCAGATTCGCACCATCAT
CGACGCCATGCCGTCTAAGCGCCAGACGTTGTTCTTCACCGCCACCTGGC
CGAAGGAGGTGCAGCGACTGGCCCGCGATTTCGTGCAAAATCCGGTGCAC
ATCACGGTGGGAGATGCGGGGAAACTGAACGCCAACAAGAGCATCACTCA
ACACATCCAGGTATTTAGCGTTTTCTCCAATACAAGGACAAAATTGACCG
TATTATGTCTTGCAGGCGGCTCCCCCAAGTACCCGCAGATCAAGGCGATC
GAAAGTGGTGTACAGGTGGTGATCGCTACTCCCGGCCGTCTGAATGACAT
CATGCAGATGGGCAAGATCAACATGTCTAACGTAATGACTCTCGCTCTCG
ACGAGGCAGATAGGATGTTGGACATGGGCTTCGAGCCTCAGATTCGCACC
ATCATCGACGCCATGCCGTCTAAGCGCCAGACGTTGTTCTTCACCGCCAC
CTGGCCGAAGGAGGTGCAGCGACTGGCCCGCGATTTCGTGCAAAATCCGG
TGCACATCACGGTGGGAGATGCGGGGAAACTGAACGCCAACAAGAGCATC
ACTCAACACATCCAGGTATTTAGCGTTTTCTCCAATACAAGGACAAAATT
GACCGTATTA
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