mRNA_H-paniculata_contig17197.4009.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: D8LF19_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF19_ECTSI) HSP 1 Score: 227 bits (578), Expect = 3.100e-69 Identity = 111/118 (94.07%), Postives = 116/118 (98.31%), Query Frame = 1
Query: 10 GGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQV 363
GGSPKYPQIKAI+SGVQVVIATPGRLNDIM+MGKINM+NVMTLALDEADRMLDMGFEPQIRTIIDAMP+KRQTLFFTATWPKEVQRLARDFV NPVHITVGDAGKLNANKSITQHI +
Sbjct: 257 GGSPKYPQIKAIQSGVQVVIATPGRLNDIMEMGKINMTNVMTLALDEADRMLDMGFEPQIRTIIDAMPAKRQTLFFTATWPKEVQRLARDFVTNPVHITVGDAGKLNANKSITQHIHI 374
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A2U1QIF9_ARTAN (DNA/RNA helicase, DEAD/DEAH box type, N-terminal n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QIF9_ARTAN) HSP 1 Score: 170 bits (431), Expect = 3.690e-47 Identity = 77/129 (59.69%), Postives = 102/129 (79.07%), Query Frame = 1
Query: 1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQVFSVFSNTR 387
CL GG+PK PQ++ +E G +V+ATPGRLNDI++M K+N+S V L LDEADRMLDMGFEPQIR II A+P++RQTL +TATWPKEV+++A DF+ NPV + +G+ +L ANKSITQH++V + R
Sbjct: 269 CLYGGAPKGPQLRELEHGADIVVATPGRLNDILEMKKVNLSQVSYLVLDEADRMLDMGFEPQIRKIISAVPTRRQTLMYTATWPKEVRKIAADFLVNPVQVNIGNVDELVANKSITQHVEVLTYMEKNR 397
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A176WJI7_MARPO (Uncharacterized protein n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176WJI7_MARPO) HSP 1 Score: 170 bits (431), Expect = 3.730e-47 Identity = 75/129 (58.14%), Postives = 105/129 (81.40%), Query Frame = 1
Query: 1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQVFSVFSNTR 387
C+ GG+PK PQ++ I+ GV +++ATPGRLND+++MG +N+ +V L LDEADRMLDMGFEPQIR I+D MP +RQTL +TATWPKEV+++ARD + +PV + VG++ +L+ANKSITQH+++ S S R
Sbjct: 335 CVCGGAPKGPQLRDIQRGVDIIVATPGRLNDLLEMGAVNLQHVSYLVLDEADRMLDMGFEPQIRAIVDQMPVQRQTLMYTATWPKEVRKIARDLMTDPVQVNVGNSDQLSANKSITQHVEIVSRSSKER 463
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A446N8Q1_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446N8Q1_TRITD) HSP 1 Score: 162 bits (410), Expect = 1.420e-46 Identity = 74/129 (57.36%), Postives = 99/129 (76.74%), Query Frame = 1
Query: 1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQVFSVFSNTR 387
CL GG+PK PQ++ +E G +V+ATPGRLNDI++MGK+++ V L LDEADRMLDMGFEPQIR I+ + KRQTL FTATWP+EV+++A D + NPV + +G+ +L ANKSITQH++V + F R
Sbjct: 131 CLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMGKVSLRQVAYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPREVRKIASDLLTNPVQVNIGNTDELVANKSITQHVEVTTSFEKGR 259
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A7J8X8I5_GOSAI (Uncharacterized protein (Fragment) n=1 Tax=Gossypium aridum TaxID=34290 RepID=A0A7J8X8I5_GOSAI) HSP 1 Score: 162 bits (410), Expect = 3.330e-46 Identity = 74/123 (60.16%), Postives = 99/123 (80.49%), Query Frame = 1
Query: 1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQVFS 369
CL GG+PK PQ++ IE GV +V+ATPGRLNDI++M +I++ V L LDEADRMLDMGFEPQIR I+ +PS+RQTL +TATWPKEV+++A D + NPV + +G+ +L ANKSITQ+++V S
Sbjct: 92 CLYGGAPKGPQLREIERGVDIVVATPGRLNDILEMSRISLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPSRRQTLMYTATWPKEVRKIAADLLGNPVQVNIGNIDELVANKSITQYVEVLS 214
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A7J9N0N9_GOSSC (Uncharacterized protein n=1 Tax=Gossypium schwendimanii TaxID=34291 RepID=A0A7J9N0N9_GOSSC) HSP 1 Score: 162 bits (410), Expect = 4.550e-46 Identity = 74/123 (60.16%), Postives = 99/123 (80.49%), Query Frame = 1
Query: 1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQVFS 369
CL GG+PK PQ++ IE GV +V+ATPGRLNDI++M +I++ V L LDEADRMLDMGFEPQIR I+ +PS+RQTL +TATWPKEV+++A D + NPV + +G+ +L ANKSITQ+++V S
Sbjct: 46 CLYGGAPKGPQLREIERGVDIVVATPGRLNDILEMSRISLRQVSYLVLDEADRMLDMGFEPQIRKIVKEVPSRRQTLMYTATWPKEVRKIAADLLGNPVQVNIGNIDELVANKSITQYVEVLS 168
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A7S0BVZ7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVZ7_9STRA) HSP 1 Score: 166 bits (419), Expect = 1.180e-45 Identity = 73/121 (60.33%), Postives = 97/121 (80.17%), Query Frame = 1
Query: 1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQV 363
CL GG+PKYPQI+A+ GV VIATPGR+ND+++MG+ ++S + + LDEADRMLDMGFEPQIR++++ +P KRQTL F+ATWPKE+QRLA DF+ P+ + VGD LNANK I Q+I +
Sbjct: 283 CLYGGAPKYPQIQALNRGVDFVIATPGRINDLIEMGRCDLSAIQFVVLDEADRMLDMGFEPQIRSVLEHVPEKRQTLLFSATWPKEIQRLAYDFLNTPIQVNVGDVNSLNANKDIKQNIHI 403
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A161Y065_DAUCS (Uncharacterized protein n=2 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A161Y065_DAUCS) HSP 1 Score: 166 bits (420), Expect = 1.240e-45 Identity = 72/121 (59.50%), Postives = 99/121 (81.82%), Query Frame = 1
Query: 1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQV 363
CL GG+PK PQ+K +E GV +V+ATPGRLNDI+QMG++N+ + + LDEADRMLDMGFEPQIR I+ +P++RQTL +TATWPKEV+++A D + NPV + +G+ +L ANKSITQH+++
Sbjct: 278 CLYGGAPKGPQLKDLERGVDIVVATPGRLNDILQMGRVNLGQISYMVLDEADRMLDMGFEPQIRKIVKEIPARRQTLMYTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHVEI 398
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A317YGL3_MAIZE (DEAD-box ATP-dependent RNA helicase 14 n=2 Tax=Zea mays TaxID=4577 RepID=A0A317YGL3_MAIZE) HSP 1 Score: 158 bits (400), Expect = 1.630e-45 Identity = 71/129 (55.04%), Postives = 98/129 (75.97%), Query Frame = 1
Query: 1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQVFSVFSNTR 387
CL GG+PK PQ++ +E G +V+ATPGRLNDI++M ++++ V L LDEAD MLDMGFEPQIR I+ +PSKRQTL +TATWP+EV+++A D + NPV + +G+ +L ANKSITQH++V +R
Sbjct: 106 CLYGGAPKGPQLRELERGADIVVATPGRLNDILEMNRVSLHQVSYLVLDEADCMLDMGFEPQIRKIVKQIPSKRQTLMYTATWPREVRKIASDLLANPVQVNIGNTDQLVANKSITQHVEVIPHMDKSR 234
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Match: A0A1D6NMQ0_MAIZE (DEAD-box ATP-dependent RNA helicase 14 n=1 Tax=Zea mays TaxID=4577 RepID=A0A1D6NMQ0_MAIZE) HSP 1 Score: 158 bits (399), Expect = 1.780e-45 Identity = 71/123 (57.72%), Postives = 96/123 (78.05%), Query Frame = 1
Query: 1 CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEADRMLDMGFEPQIRTIIDAMPSKRQTLFFTATWPKEVQRLARDFVQNPVHITVGDAGKLNANKSITQHIQVFS 369
CL GG+PK PQ++ ++ GV VV+ATPGRLNDI++M K+++ V L LDEADRMLDMGFEPQIR I+ +P +RQTL +TATWPKEV+R+A D + +PV +T+G L AN SITQH+++ +
Sbjct: 71 CLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRKVSLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPHRRQTLMYTATWPKEVRRIADDLLVHPVQVTIGSVDSLVANSSITQHVEIIT 193 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17197.4009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17197.4009.1 >prot_H-paniculata_contig17197.4009.1 ID=prot_H-paniculata_contig17197.4009.1|Name=mRNA_H-paniculata_contig17197.4009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp CLAGGSPKYPQIKAIESGVQVVIATPGRLNDIMQMGKINMSNVMTLALDEback to top mRNA from alignment at H-paniculata_contig17197:5064..5468- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17197.4009.1 ID=mRNA_H-paniculata_contig17197.4009.1|Name=mRNA_H-paniculata_contig17197.4009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig17197:5064..5468- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17197:5064..5468- >mRNA_H-paniculata_contig17197.4009.1 ID=mRNA_H-paniculata_contig17197.4009.1|Name=mRNA_H-paniculata_contig17197.4009.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig17197:5064..5468- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |