mRNA_H-paniculata_contig17166.3996.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17166.3996.1 vs. uniprot
Match: A0A7D9D5L2_PARCT (Uncharacterized protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D5L2_PARCT) HSP 1 Score: 161 bits (407), Expect = 1.160e-43 Identity = 76/191 (39.79%), Postives = 120/191 (62.83%), Query Frame = 3
Query: 243 FRMKNLGSLSRVLGIEVRRDRPNGTITISQGSYTREVLKRYGFDECRGVPTPVE-GKVKISAADRGKSGNSTEYRGMVRSFMYASARTRPDIAYAVHQAARRMGDPSRVDFSTCKRIFRYLSTVPDLGITFGGKSNGHDLEEFVDDDWAEDVEDRKSTTGYIFELNGGAISWCSRKQQLVKWSSTDAEYIA 812
F++ ++G + VLG+ +RRDR G +TISQ +Y + +LKR+G ++C+ V TP+E GK D N+ EY+ ++ Y + TRPD+A AV ++ M PS+ + KR+ RY+ + G+ F GKS L + D DWA D++ R+ST+GY+F++NG +SWCS++Q V S+T+AEY+A
Sbjct: 13 FKVDDMGEVKHVLGMVIRRDRRKGKMTISQSTYLQGILKRFGMEQCKPVSTPLEPGKHFQELPDDENPTNTNEYQKLIGCLTYVTTATRPDLASAVGILSKFMSKPSKEHWHGAKRVLRYIKDTVNYGLVFEGKSTKCSLIGYSDADWANDLDTRRSTSGYVFQINGSTVSWCSKRQPCVTRSTTEAEYVA 203
BLAST of mRNA_H-paniculata_contig17166.3996.1 vs. uniprot
Match: A0A6S7KSC5_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7KSC5_PARCT) HSP 1 Score: 159 bits (401), Expect = 2.580e-43 Identity = 82/191 (42.93%), Postives = 118/191 (61.78%), Query Frame = 3
Query: 243 FRMKNLGSLSRVLGIEVRRDRPNGTITISQGSYTREVLKRYGFDECRGVPTPVE-GKVKISAADRGKSGNSTEYRGMVRSFMYASARTRPDIAYAVHQAARRMGDPSRVDFSTCKRIFRYLSTVPDLGITFGGKSNGHDLEEFVDDDWAEDVEDRKSTTGYIFELNGGAISWCSRKQQLVKWSSTDAEYIA 812
F++++LG +S +LG+ ++RDR + T+TISQ Y VLKR+ +EC+ V TP+E GK +D N EY+ ++ Y + TRPD+A AV ++ M PS+ + KRI RY+ + GITF K L + D DWA D E R+ST+GYIF+++G ISWCS+KQ V SST+AEY+A
Sbjct: 53 FKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDETPANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMA 243
BLAST of mRNA_H-paniculata_contig17166.3996.1 vs. uniprot
Match: A0A177VUP4_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VUP4_9BASI) HSP 1 Score: 162 bits (411), Expect = 5.710e-43 Identity = 83/205 (40.49%), Postives = 120/205 (58.54%), Query Frame = 3
Query: 237 STFRMKNLGSLSRVLGIEVRRDRPNGTITISQGSYTREVLKRYGFDECRGVPTPVEGKVKISAADRGKS-GNSTEYRGMVRSFMYASARTRPDIAYAVHQAARRMGDPSRVDFSTCKRIFRYLSTVPDLGITFGGKSNGH-DLEEFVDDDWAEDVEDRKSTTGYIFELNGGAISWCSRKQQLVKWSSTDAEYIAAGEWGRRRYIL 845
S F+ +LG LGI + R+ +GTIT+ Q Y +EVL R+G EC TP++ K + A G++ + +++ +V Y + TRPD+AYAV R DP+ R+ RYL +TFGG+ +G+ LE FVD DWA D +DR+ST+G++F + GGA+SW SRKQ V S+ +AEY+AAG GR +L
Sbjct: 129 SLFKGTDLGPAHHCLGIRISRNWEDGTITLDQERYAKEVLARFGMSECNAAKTPMDQKANLRKATDGEARADKKKFQAIVGCLAYLAQGTRPDLAYAVSTLGRFSSDPTETHRVAANRVLRYLKRTSGAKLTFGGQKDGNISLEGFVDSDWAADRDDRRSTSGFVFTVGGGAVSWGSRKQGAVALSTAEAEYVAAGVAGRESLML 333
BLAST of mRNA_H-paniculata_contig17166.3996.1 vs. uniprot
Match: A0A177T2R9_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177T2R9_9BASI) HSP 1 Score: 157 bits (397), Expect = 4.040e-42 Identity = 81/203 (39.90%), Postives = 116/203 (57.14%), Query Frame = 3
Query: 243 FRMKNLGSLSRVLGIEVRRDRPNGTITISQGSYTREVLKRYGFDECRGVPTPVEGKVKISAADRGKS-GNSTEYRGMVRSFMYASARTRPDIAYAVHQAARRMGDPSRVDFSTCKRIFRYLSTVPDLGITFGGKSNGH-DLEEFVDDDWAEDVEDRKSTTGYIFELNGGAISWCSRKQQLVKWSSTDAEYIAAGEWGRRRYIL 845
F+ +LG LGI + R GTIT+ Q Y +EVL R+G +C TP++ K + A G++ + E++ +V Y + TRPD+AYAV R DP+ R+ RYL +TFGG+ +G+ L FVD DWA D +DR+ST+G++F + GGA+SW SRKQ V S+ +AEY+AAG GR +L
Sbjct: 30 FKGTDLGPAHHCLGIRISRSWEEGTITLDQERYAKEVLARFGMSDCNPAKTPMDQKASLRKAVDGEARADKKEFQAIVGCLAYLAQGTRPDLAYAVSTLGRFSSDPTETHRIAANRVLRYLKRTSGATLTFGGQKDGNVSLAGFVDSDWAADRDDRRSTSGFVFTVGGGAVSWGSRKQGAVALSTAEAEYVAAGVAGREALML 232
BLAST of mRNA_H-paniculata_contig17166.3996.1 vs. uniprot
Match: A0A177V816_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Tilletia caries TaxID=13290 RepID=A0A177V816_9BASI) HSP 1 Score: 164 bits (415), Expect = 1.060e-41 Identity = 84/205 (40.98%), Postives = 120/205 (58.54%), Query Frame = 3
Query: 237 STFRMKNLGSLSRVLGIEVRRDRPNGTITISQGSYTREVLKRYGFDECRGVPTPVEGKVKISAADRGKS-GNSTEYRGMVRSFMYASARTRPDIAYAVHQAARRMGDPSRVDFSTCKRIFRYLSTVPDLGITFGGKSNGH-DLEEFVDDDWAEDVEDRKSTTGYIFELNGGAISWCSRKQQLVKWSSTDAEYIAAGEWGRRRYIL 845
S F+ +LG LGI + R+ +GTIT+ Q Y +EVL R+G EC TP++ K + A G++ + E++ +V Y + TRPD+AYAV R DP+ R+ RYL +TFGG+ +G+ LE FVD DWA D +DR+ST+G++F + GGA+SW SRKQ V S+ +AEY+AAG GR +L
Sbjct: 534 SLFKGTDLGPAHHCLGIRISRNWEDGTITLDQERYAKEVLARFGMSECNAAKTPMDQKANLRKATDGEARADKKEFQAIVGCLAYLAQGTRPDLAYAVSTLGRFSSDPTETHRVAANRVLRYLKRTSGAKLTFGGQKDGNISLEGFVDSDWAADRDDRRSTSGFVFTVGGGAVSWGSRKQGAVALSTAEAEYVAAGVAGRESLML 738
BLAST of mRNA_H-paniculata_contig17166.3996.1 vs. uniprot
Match: A0A176W9J0_MARPO (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Marchantia polymorpha subsp. ruderalis TaxID=1480154 RepID=A0A176W9J0_MARPO) HSP 1 Score: 161 bits (407), Expect = 2.140e-41 Identity = 95/243 (39.09%), Postives = 139/243 (57.20%), Query Frame = 3
Query: 234 KSTFRMKNLGSLSRVLGIEVRRDRPNGTITISQGSYTREVLKRYGFDECRGVPTPVEGKVKISAA----DRGKSGNST--EYRGMVRSFMYASARTRPDIAYAVHQAARRMGDPSRVDFSTCKRIFRYLSTVPDLGITFGGK-SNGHDLEEFVDDDWAEDVEDRKSTTGYIFELNGGAISWCSRKQQLVKWSSTDAEYIAAGEWGRRRYILGSY*DR*VSDAGGARHCVRTLNQLLISVRNLA 941
KS F+MK++G R+LG+E+ RD + +SQG Y R +L R+ + +GV TP+ K+SAA D + GN + Y V S MY TRPDIA+A+ + +R M +P +V + K I RYL + D G+ F G N L +VD D+ +D++ R+STTGY+F L GG+ISW S Q+ V S+T+AEY+AA E + L DR + + G +H V L+ S+ +LA
Sbjct: 319 KSAFKMKDMGESKRILGMEIHRDHEQKKLWLSQGKYVRRILDRFNMMDSKGVWTPLAAHFKLSAAQCPTDAVEKGNMSCVPYEQAVGSLMYLMVCTRPDIAFAMGKVSRYMSNPGKVHWEAVKWILRYLKSTLDYGLLFDGLLDNAKSLFGYVDADYGQDLDKRRSTTGYVFTLGGGSISWRSTLQKCVAQSTTEAEYVAAAEAAKEAIWL----DRLIMEMG-LKHGVVNLHSDSHSILHLA 556
BLAST of mRNA_H-paniculata_contig17166.3996.1 vs. uniprot
Match: A0A177VLY9_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177VLY9_9BASI) HSP 1 Score: 160 bits (406), Expect = 1.720e-40 Identity = 83/203 (40.89%), Postives = 117/203 (57.64%), Query Frame = 3
Query: 243 FRMKNLGSLSRVLGIEVRRDRPNGTITISQGSYTREVLKRYGFDECRGVPTPVEGKVKI-SAADRGKSGNSTEYRGMVRSFMYASARTRPDIAYAVHQAARRMGDPSRVDFSTCKRIFRYLSTVPDLGITFGGKSNGH-DLEEFVDDDWAEDVEDRKSTTGYIFELNGGAISWCSRKQQLVKWSSTDAEYIAAGEWGRRRYIL 845
F+ +LG LGI + R+ TIT+ Q Y +EVL R+G +C TP++ K + AAD + EY+ +V Y + TRPD+AYAV R DP+ + R+ RYL +TFGG +G+ +LE FVD DWA D +DR+ST+G++F + GGA+SW SRKQ V S+ +AEY+AAG GR +L
Sbjct: 531 FKGTDLGPAHHCLGIRINRNWDEDTITLDQERYAKEVLARFGMSDCNPARTPMDQKTSLRKAADGEARADKREYQAIVGCLAYLAQGTRPDLAYAVSTLGRYGSDPTETHRTAANRVLRYLKRTSSAKLTFGGSRDGNVNLEGFVDSDWAADRDDRRSTSGFVFTVGGGAVSWGSRKQGAVALSTAEAEYVAAGVAGREALML 733
BLAST of mRNA_H-paniculata_contig17166.3996.1 vs. uniprot
Match: A0A177VM55_9BASI (Integrase catalytic domain-containing protein n=1 Tax=Tilletia controversa TaxID=13291 RepID=A0A177VM55_9BASI) HSP 1 Score: 161 bits (407), Expect = 1.800e-40 Identity = 84/205 (40.98%), Postives = 117/205 (57.07%), Query Frame = 3
Query: 237 STFRMKNLGSLSRVLGIEVRRDRPNGTITISQGSYTREVLKRYGFDECRGVPTPVEGKVKI-SAADRGKSGNSTEYRGMVRSFMYASARTRPDIAYAVHQAARRMGDPSRVDFSTCKRIFRYLSTVPDLGITFGGKSNGH-DLEEFVDDDWAEDVEDRKSTTGYIFELNGGAISWCSRKQQLVKWSSTDAEYIAAGEWGRRRYIL 845
S F+ +LG LGI + R+ NGTIT+ Q Y +EVL R+G EC TP++ K + A D + E++ +V Y + TRPD+AYAV R DP+ R+ RYL +TFG + +G+ LE FVD DWA D +DR+ST+G++F + GGA+SW SRKQ V S+ +AEY+AAG GR +L
Sbjct: 1182 SLFKGTDLGPAHHCLGIRISRNWENGTITLDQERYAKEVLSRFGMTECNPAKTPMDQKASLRKATDDETRADKREFQAIVGCLAYLAQGTRPDLAYAVSTLGRFSSDPTETHRIAANRVLRYLKRTSGAKLTFGEQKDGNVSLEGFVDSDWAADRDDRRSTSGFVFTVGGGAVSWGSRKQGAVALSTAEAEYVAAGVVGRESLML 1386
BLAST of mRNA_H-paniculata_contig17166.3996.1 vs. uniprot
Match: A0A7D9IUY0_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9IUY0_PARCT) HSP 1 Score: 160 bits (404), Expect = 4.400e-40 Identity = 82/191 (42.93%), Postives = 119/191 (62.30%), Query Frame = 3
Query: 243 FRMKNLGSLSRVLGIEVRRDRPNGTITISQGSYTREVLKRYGFDECRGVPTPVE-GKVKISAADRGKSGNSTEYRGMVRSFMYASARTRPDIAYAVHQAARRMGDPSRVDFSTCKRIFRYLSTVPDLGITFGGKSNGHDLEEFVDDDWAEDVEDRKSTTGYIFELNGGAISWCSRKQQLVKWSSTDAEYIA 812
F++++LG +S +LG+ ++RDR + T+TISQ Y VLKR+ +EC+ V TP+E GK +D + N EY+ ++ Y + TRPD+A AV ++ M PS+ + KRI RY+ + GITF K L + D DWA D E R+ST+GYIF+++G ISWCS+KQ V SST+AEY+A
Sbjct: 1059 FKVEDLGEVSHILGMLIKRDRDSRTLTISQSKYLEGVLKRFNMEECKPVSTPLEPGKQFHELSDDERPANIHEYQKIIGCLTYVTTATRPDLAAAVGILSKYMTKPSQEHWKGVKRILRYIKGTLNFGITFQAKDQTCILTGYSDADWANDTETRRSTSGYIFQISGCTISWCSKKQSCVSRSSTEAEYMA 1249
BLAST of mRNA_H-paniculata_contig17166.3996.1 vs. uniprot
Match: A0A177V4F2_9BASI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tilletia walkeri TaxID=117179 RepID=A0A177V4F2_9BASI) HSP 1 Score: 150 bits (380), Expect = 1.720e-39 Identity = 80/202 (39.60%), Postives = 119/202 (58.91%), Query Frame = 3
Query: 243 FRMKNLGSLSRVLGIEVRRDRPNGTITISQGSYTREVLKRYGFDECRGVPTPVEGKVKISAADRGKSGNSTE-YRGMVRSFMYASARTRPDIAYAVHQAARRMGDPSRVDFSTCKRIFRYLSTVPDLGITFGGKSNGHDLEEFVDDDWAEDVEDRKSTTGYIFELNGGAISWCSRKQQLVKWSSTDAEYIAAGEWGRRRYIL 845
F+ K+LG +LGIE++R+R T+T+ QG Y REVL+R+G C+ TP+E K+ ++ G+ + YR +V S M+ + TR D + R + DPS + + KR+ R L D +TF G +NG + FVD DWA D DRKST+G+ + GGA++W ++KQ V +S+T+AEY+AAG GR L
Sbjct: 51 FKGKDLGDAHHLLGIEIKRNREKRTLTMFQGRYAREVLERFGMSNCKPARTPMETKISLTPRAEGEEKADAQLYRAIVGSLMWLAMGTRVDYGFRDGFLGRFVSDPSVKNLTAAKRVLRDLKGTLDAELTFDG-TNGLRIAAFVDADWAGDKADRKSTSGFAIMMAGGAVTWGAKKQTAVAFSTTEAEYVAAGLAGRETIAL 251 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17166.3996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17166.3996.1 >prot_H-paniculata_contig17166.3996.1 ID=prot_H-paniculata_contig17166.3996.1|Name=mRNA_H-paniculata_contig17166.3996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=203bp MKNLGSLSRVLGIEVRRDRPNGTITISQGSYTREVLKRYGFDECRGVPTPback to top mRNA from alignment at H-paniculata_contig17166:842..1892+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17166.3996.1 ID=mRNA_H-paniculata_contig17166.3996.1|Name=mRNA_H-paniculata_contig17166.3996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1051bp|location=Sequence derived from alignment at H-paniculata_contig17166:842..1892+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17166:842..1892+ >mRNA_H-paniculata_contig17166.3996.1 ID=mRNA_H-paniculata_contig17166.3996.1|Name=mRNA_H-paniculata_contig17166.3996.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at H-paniculata_contig17166:842..1892+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |