mRNA_H-paniculata_contig17162.3995.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17162.3995.1
Unique NamemRNA_H-paniculata_contig17162.3995.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17162.3995.1 vs. uniprot
Match: A0A6H5JCJ9_9PHAE (Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ9_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.610e-19
Identity = 69/172 (40.12%), Postives = 89/172 (51.74%), Query Frame = 1 
Query:  244 LTGEWHETTEDRDGEVHNILRVQ--PSS------MSSAPDEVSAGGLSKVSSMPDRPSATSCFPGWLWHGLVSEQECNKRGVAMNEGAS--VSGRLLWSMREGLFNALDDFIHTSSIGEFCARMQMLRAFSANLATV*ASRPGGNGDKGLTDQTIPSALAVYLQAFWRYHAQ 729
            LTG W E     D +  N L++Q  P++      +S  P         KV S PD PSA   FP WLW GLVS      +GV + E +S  +    L   R GLF  LDDF+ TSSIGEF AR+QMLRAF+A L +       G+ D   T  T   AL + +Q  W+Y++Q
Sbjct: 2613 LTGHWKE-----DSQASNPLQLQCGPAAAPGGLRVSDEPSTAHRVSSEKVVSAPDWPSARGFFPDWLWSGLVSN-----KGVGVTEESSGGIDAASLDHAR-GLFQPLDDFLRTSSIGEFFARLQMLRAFAAQLGSSSNGGTIGSCDDYETCTTRAQALGIVVQGLWQYYSQ 2773
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BLAST of mRNA_H-paniculata_contig17162.3995.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 4.610e-18
Identity = 68/175 (38.86%), Postives = 91/175 (52.00%), Query Frame = 1 
Query:  244 LTGEWHETTEDRDGEVHNILRVQ--PSS------MSSAPDEVSAGGLSKVSSMPDRPSATSCFPGWLWHGLVSEQECNKRGVAMNEGASVSGRLLWSMREGLFNALDDFIHTSSIGEFCARMQMLRAFSANLAT-----V*ASRPGGNGDKGLTDQTIPSALAVYLQAFWRYHAQ 729
            LTGEW+     +D +  N L++Q  P++      +S  P  V      KV   PD PSA+  FP WLW GLVS++     GVA      +    L   R GLF  LDDF+ TS+IGEF AR+QMLRAF+A L +       A R   N  K  T +    AL + +Q  W+Y++Q
Sbjct: 3441 LTGEWN-----KDLQASNPLQLQRDPAAAPGGVPVSDGPAAVQQVPGGKVFKAPDWPSASGYFPDWLWSGLVSKKGA---GVAEESSGGLDAASLDHAR-GLFQPLDDFLRTSNIGEFFARLQMLRAFAAQLCSSSNGATTAFRDDPNDSKTCTRRA--QALGIVVQGLWQYYSQ 3604
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17162.3995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCJ9_9PHAE1.610e-1940.12Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
D7FL28_ECTSI4.610e-1838.86Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17162contigH-paniculata_contig17162:2207..4572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.7
Seed ortholog evalue3.8e-14
Seed eggNOG ortholog2880.D7FL28
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons3
Model size729
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17162.3995.1prot_H-paniculata_contig17162.3995.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17162 2405..4470 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929354.8885412-UTR-H-paniculata_contig17162:2206..24041622929354.8885412-UTR-H-paniculata_contig17162:2206..2404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17162 2207..2404 +
1691480827.6875038-UTR-H-paniculata_contig17162:2206..24041691480827.6875038-UTR-H-paniculata_contig17162:2206..2404Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17162 2207..2404 +
1622929354.9672937-UTR-H-paniculata_contig17162:4470..45721622929354.9672937-UTR-H-paniculata_contig17162:4470..4572Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17162 4471..4572 +
1691480827.738727-UTR-H-paniculata_contig17162:4470..45721691480827.738727-UTR-H-paniculata_contig17162:4470..4572Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17162 4471..4572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929354.9037945-CDS-H-paniculata_contig17162:2404..24181622929354.9037945-CDS-H-paniculata_contig17162:2404..2418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17162 2405..2418 +
1691480827.7039998-CDS-H-paniculata_contig17162:2404..24181691480827.7039998-CDS-H-paniculata_contig17162:2404..2418Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17162 2405..2418 +
1622929354.9222977-CDS-H-paniculata_contig17162:3043..33501622929354.9222977-CDS-H-paniculata_contig17162:3043..3350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17162 3044..3350 +
1691480827.7147927-CDS-H-paniculata_contig17162:3043..33501691480827.7147927-CDS-H-paniculata_contig17162:3043..3350Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17162 3044..3350 +
1622929354.9475496-CDS-H-paniculata_contig17162:4362..44701622929354.9475496-CDS-H-paniculata_contig17162:4362..4470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17162 4363..4470 +
1691480827.726293-CDS-H-paniculata_contig17162:4362..44701691480827.726293-CDS-H-paniculata_contig17162:4362..4470Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17162 4363..4470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17162.3995.1

>prot_H-paniculata_contig17162.3995.1 ID=prot_H-paniculata_contig17162.3995.1|Name=mRNA_H-paniculata_contig17162.3995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
MGFFRRSDGGSISTPLTGEWHETTEDRDGEVHNILRVQPSSMSSAPDEVS
AGGLSKVSSMPDRPSATSCFPGWLWHGLVSEQECNKRGVAMNEGASVSGR
LLWSMREGLFNALDDFIHTSSIGEFCARMQMLRAFSANLATV*
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mRNA from alignment at H-paniculata_contig17162:2207..4572+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17162.3995.1 ID=mRNA_H-paniculata_contig17162.3995.1|Name=mRNA_H-paniculata_contig17162.3995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2366bp|location=Sequence derived from alignment at H-paniculata_contig17162:2207..4572+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAACGTGGGGGTTGTGGAGGGTGGGGTGGGTGGTATTGGATGGATAGGG
GAGGAGACTGCAGGTGAGAATATTTCAGTCATCGACGGCTACCTGGATTT
TCATATGGACGCGAATGTGAAGGAAACGCGATGAACGGATGGGCCTTTAG
CGGTAGTGCTTCGTCGTGTGGCTGGGCTGCTGCAGGAGTTTCCAGGCCAT
GGGGTTTTTCAGGTGGGAAGAGCAATTTGGAGTTATTTATTATAGTTGCA
TTCATGCGTGATGTTGGAACATTGGCCTTAAAAATTAAACTGCGCGTGTT
CCTCGTTACCTCGCCAGCTTTGGTGCAACCCATCTAGAGATGATTGTGTG
AGATGGCTTATTTATTGGATTTGTGATACTCCATCAATGGTACCATCGAG
CATACAATGCACTTGATTCATCAGCGACCTTTTTCAGGGCTTCTTTCCTT
TGGCCTGTAGAGGTAATCTTGTGAAACAGTTGGCGAGAGTGGCCGACCAA
GTCCGTCGCATGCCTCTTCACTTTCCATAAGCGGCGGTATTGGCAGGGGT
TGAGCTCACCTTGCGAAAACCGCAAGATTGGGAACAGCACGTACATCGTG
GTGTGATCCTCAAGGATGAGCTGAGAGCATTGAGCTCGTTGGTTGTGTGA
TGGGCTATCGAGTTCAAGAGCTCGCTGCTGCTACTTGATAGACGGGAAAA
ATCATTCGTTTGAAGTTGTAATTTGGTTGCTTCTGTTGTAGGTTCTACGG
TGGTCGTGTACTGGAAGTCATCCATCATAACAAGTGCGAGGTTAATGTTG
CCGTGGACGCGTATATCCTTTTGCCCCGACGCTGCAGGCGAAGTGATGGT
GGTTCCATCTCTACTCCACTCACTGGAGAATGGCACGAGACAACGGAAGA
CAGGGATGGTGAAGTACATAATATCCTTCGAGTACAACCATCTTCCATGT
CGAGTGCACCTGATGAAGTTTCTGCCGGCGGGCTATCGAAGGTGTCCTCG
ATGCCTGATAGGCCAAGCGCCACGTCGTGTTTTCCTGGTTGGCTGTGGCA
TGGACTTGTTTCCGAACAGGAATGTAACAAGAGGGGAGTGGCCATGAACG
AGGGTGCCTCGGTTTCGGGGAGGCTTCTTTGGTCCATGAGGGAGGTGGGA
TGTGGTATGAGCTGCTGAGCAAAAGCGCCGTCTACCGGTAGAGTTGATGT
ACATGAAAAGGAGGTAAGACTGTGTGCTTGCATACCTCATGCGTGCGACA
GGCGTTCACCTAGCACGATGAGGAAAAAAGTTTGACTCGTTTTATCTCTT
CTGTAAGGGTCCTTCGAAGAAAGGACCCTCTCGTGAAGAACAGACCCTCA
CACTGAACGCTTGGTGATTAAGTACACTGTTGGAACAAATACGGCCACGA
TTTGTTTCTATTTGAAGTGAAGTTTTGATGGAAAAGGGTTTTCTACCGGG
CATTTTGTAAACCTTGAAAAATGTTGAGTGCTTTAACCAGTCGCAATGGA
AATCTTTTCTAGATTCGTGCTCTTTGTTTTGCCCCAAATACTGTGGTAAT
TCATCACCATCTTCGAAGATACTGCTACCCTTGAGTGGAGGCGCACTGAC
GACAATCATTATCCGGCGTTCTATTAAGTTATTCCGCCCCCTGATGTACG
TTGCTCTAAAGACCAAAATAGTCACGTTTAGAGTTTATTGATGCCTTTTC
TGCGACGCCGAGCGCCTCTGTTCGACGTACACGTGTCATTTTCATATATC
CCATAAAAATTGTGTCATGTGTTGACACTTTAACCCTCTCTTCGGGGGAG
TAATTTATTCCACAGTTATTTTATTGTTGATCGTACAGAGTTTTTATTTA
GCTGGGAATTTATTGTGCTGTGCTGATCCAACACGTAATTCAAAGTCGCT
GATGCAGACTATGTGTTCATGGATACCTTCTGATGTCAACAACGAGCTCA
AACGGAGCACTTTACATTCTCGTAGTTACACCTTATTTACGGGACAATGG
TCTACGTGATTTCCGCGAGAGGGTGCTTTTTGCAATGACTACGCCCAGGC
TGCCCGCCTAGTGTGTCTAGTCCCGTCCATCACTCTGCTGGCGTACCTCG
TCGATGTCGCGCATGGTGGCGTTCCTTTTTTCCCATATATTACTGATTGT
GAACAGGGCCTCTTCAACGCGCTGGACGATTTTATTCACACCTCTAGCAT
TGGGGAGTTTTGCGCCAGGATGCAGATGCTGCGGGCGTTCTCTGCCAATC
TTGCCACAGTATAAGCTTCTCGTCCGGGCGGGAACGGTGACAAAGGTTTA
ACCGACCAGACGATTCCTAGCGCGTTGGCTGTCTATCTACAAGCATTTTG
GCGGTATCATGCGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig17162:2207..4572+

>mRNA_H-paniculata_contig17162.3995.1 ID=mRNA_H-paniculata_contig17162.3995.1|Name=mRNA_H-paniculata_contig17162.3995.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig17162:2207..4572+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGTTTTTCAGATGGGGTTTTTCAGGCGAAGTGATGGTGGTTCCATC
TCTACTCCACTCACTGGAGAATGGCACGAGACAACGGAAGACAGGGATGG
TGAAGTACATAATATCCTTCGAGTACAACCATCTTCCATGTCGAGTGCAC
CTGATGAAGTTTCTGCCGGCGGGCTATCGAAGGTGTCCTCGATGCCTGAT
AGGCCAAGCGCCACGTCGTGTTTTCCTGGTTGGCTGTGGCATGGACTTGT
TTCCGAACAGGAATGTAACAAGAGGGGAGTGGCCATGAACGAGGGTGCCT
CGGTTTCGGGGAGGCTTCTTTGGTCCATGAGGGAGGCGAAGTGATGGTGG
TTCCATCTCTACTCCACTCACTGGAGAATGGCACGAGACAACGGAAGACA
GGGATGGTGAAGTACATAATATCCTTCGAGTACAACCATCTTCCATGTCG
AGTGCACCTGATGAAGTTTCTGCCGGCGGGCTATCGAAGGTGTCCTCGAT
GCCTGATAGGCCAAGCGCCACGTCGTGTTTTCCTGGTTGGCTGTGGCATG
GACTTGTTTCCGAACAGGAATGTAACAAGAGGGGAGTGGCCATGAACGAG
GGTGCCTCGGTTTCGGGGAGGCTTCTTTGGTCCATGAGGGAGGGCCTCTT
CAACGCGCTGGACGATTTTATTCACACCTCTAGCATTGGGGAGTTTTGCG
CCAGGATGCAGATGCTGCGGGCGTTCTCTGCCAATCTTGCCACAGTATAA
GGCCTCTTCAACGCGCTGGACGATTTTATTCACACCTCTAGCATTGGGGA
GTTTTGCGCCAGGATGCAGATGCTGCGGGCGTTCTCTGCCAATCTTGCCA
CAGTATAA
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