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Homology
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: D1J759_ECTSI (Cytochrome b6-f complex subunit 5 n=52 Tax=Phaeophyceae TaxID=2870 RepID=D1J759_ECTSI) HSP 1 Score: 70.1 bits (170), Expect = 2.520e-15 Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
MIEPLLFGMVLGLIPVTLIGLF AAFLQYRRGNKLGL
Sbjct: 1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: B7T220_VAULI (Cytochrome b6-f complex subunit 5 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T220_VAULI) HSP 1 Score: 63.2 bits (152), Expect = 1.410e-12 Identity = 29/37 (78.38%), Postives = 36/37 (97.30%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
MIEPLLFG+VLG++PVT+IGLF AA+LQYRRGN++GL
Sbjct: 1 MIEPLLFGIVLGIVPVTIIGLFIAAYLQYRRGNQIGL 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: PETG_GUITH (Cytochrome b6-f complex subunit 5 n=13 Tax=Eukaryota TaxID=2759 RepID=PETG_GUITH) HSP 1 Score: 62.4 bits (150), Expect = 2.850e-12 Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
MIEPLLFG+VLGLIPVTL GLF AA+LQYRRGN+ GL
Sbjct: 1 MIEPLLFGIVLGLIPVTLTGLFVAAYLQYRRGNQFGL 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: A0A1C9CCX2_9RHOD (Cytochrome b6-f complex subunit 5 n=1 Tax=Bangiopsis subsimplex TaxID=139980 RepID=A0A1C9CCX2_9RHOD) HSP 1 Score: 62.4 bits (150), Expect = 2.850e-12 Identity = 29/37 (78.38%), Postives = 36/37 (97.30%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
M+EPLL G+VLGLIPVTL+GLFSAA+LQYRRGN++G+
Sbjct: 1 MVEPLLSGIVLGLIPVTLLGLFSAAYLQYRRGNQIGM 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: W0RYK9_PORPP (Cytochrome b6-f complex subunit 5 n=15 Tax=cellular organisms TaxID=131567 RepID=W0RYK9_PORPP) HSP 1 Score: 62.0 bits (149), Expect = 4.060e-12 Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
M+EPLL G++LGLIPVTLIGLF AA+LQYRRGN+LGL
Sbjct: 1 MVEPLLSGIILGLIPVTLIGLFVAAYLQYRRGNQLGL 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: B2XT41_HETAK (Cytochrome b6-f complex subunit 5 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT41_HETAK) HSP 1 Score: 62.0 bits (149), Expect = 4.060e-12 Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
MIEPLLFG+VLG+IPVTL GLF AA+LQY+RGN+LGL
Sbjct: 1 MIEPLLFGIVLGMIPVTLTGLFVAAYLQYKRGNQLGL 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: A0A1C9CFS4_9FLOR (Cytochrome b6-f complex subunit 5 n=2 Tax=Hildenbrandia TaxID=31479 RepID=A0A1C9CFS4_9FLOR) HSP 1 Score: 61.6 bits (148), Expect = 5.770e-12 Identity = 29/37 (78.38%), Postives = 35/37 (94.59%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
MIEPLLFG+VLGLIP+TL+GLF AA+LQ+RR NKLG+
Sbjct: 1 MIEPLLFGIVLGLIPITLLGLFVAAYLQFRRANKLGI 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: K8GJW3_9CYAN (Cytochrome b6-f complex subunit 5 n=6 Tax=Bacteria TaxID=2 RepID=K8GJW3_9CYAN) HSP 1 Score: 60.8 bits (146), Expect = 1.170e-11 Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
MIEP+L G+VLGLIPVTL GLF AA+LQYRRGN+LGL
Sbjct: 1 MIEPILLGIVLGLIPVTLAGLFVAAYLQYRRGNELGL 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: A0A098TN63_9CYAN (Cytochrome b6-f complex subunit 5 n=1 Tax=Neosynechococcus sphagnicola sy1 TaxID=1497020 RepID=A0A098TN63_9CYAN) HSP 1 Score: 60.8 bits (146), Expect = 1.170e-11 Identity = 29/37 (78.38%), Postives = 35/37 (94.59%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
M+EPLL G+V+GLIPVTL+GLF AA+LQYRRGN+LGL
Sbjct: 1 MVEPLLTGIVMGLIPVTLLGLFVAAYLQYRRGNQLGL 37
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: M1K3W3_DIALT (Cytochrome b6-f complex subunit 5 n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1K3W3_DIALT) HSP 1 Score: 60.1 bits (144), Expect = 2.350e-11 Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 Query: 1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
M+EPLL G+VLGLIPVT +GLF AAFLQYRRGN+LG+
Sbjct: 1 MVEPLLSGIVLGLIPVTALGLFVAAFLQYRRGNQLGI 37
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 71.6 |
| Seed ortholog evalue | 8.7e-11 |
| Seed eggNOG ortholog | 2880.D1J759 |
| Preferred name | petG |
| KEGG ko | ko:K02640 |
| KEGG Pathway | ko00195,ko01100,map00195,map01100 |
| KEGG Module | M00162 |
| Hectar predicted targeting category | signal peptide |
| GOs | GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035 |
| EggNOG free text desc. | photosynthesis |
| EggNOG OGs | 2E6DA@1,2SD3G@2759 |
| COG Functional cat. | U |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko00002,ko00194 |
| Exons | 1 |
| Model size | 114 |
| Cds size | 114 |
| Stop | 1 |
| Start | 1 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10613.399.1 >prot_H-paniculata_contig10613.399.1 ID=prot_H-paniculata_contig10613.399.1|Name=mRNA_H-paniculata_contig10613.399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL* back to topmRNA from alignment at H-paniculata_contig10613:5184..5297- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig10613.399.1 ID=mRNA_H-paniculata_contig10613.399.1|Name=mRNA_H-paniculata_contig10613.399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=114bp|location=Sequence derived from alignment at H-paniculata_contig10613:5184..5297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGAACCTCTTCTTTTTGGTATGGTATTAGGTCTAATTCCAGTAAC
TTTAATTGGTTTATTTAGTGCGGCTTTTCTACAATATCGTCGTGGAAATA
AGCTTGGTTTATAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig10613:5184..5297- >mRNA_H-paniculata_contig10613.399.1 ID=mRNA_H-paniculata_contig10613.399.1|Name=mRNA_H-paniculata_contig10613.399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at H-paniculata_contig10613:5184..5297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGAACCTCTTCTTTTTGGTATGGTATTAGGTCTAATTCCAGTAAC
TTTAATTGGTTTATTTAGTGCGGCTTTTCTACAATATCGTCGTGGAAATA
AGCTTGGTTTATAAATGATTGAACCTCTTCTTTTTGGTATGGTATTAGGT
CTAATTCCAGTAACTTTAATTGGTTTATTTAGTGCGGCTTTTCTACAATA
TCGTCGTGGAAATAAGCTTGGTTTATAA back to top
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