mRNA_H-paniculata_contig10613.399.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig10613.399.1
Unique NamemRNA_H-paniculata_contig10613.399.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: D1J759_ECTSI (Cytochrome b6-f complex subunit 5 n=52 Tax=Phaeophyceae TaxID=2870 RepID=D1J759_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 2.520e-15
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
            MIEPLLFGMVLGLIPVTLIGLF AAFLQYRRGNKLGL
Sbjct:    1 MIEPLLFGMVLGLIPVTLIGLFVAAFLQYRRGNKLGL 37
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BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: B7T220_VAULI (Cytochrome b6-f complex subunit 5 n=1 Tax=Vaucheria litorea TaxID=109269 RepID=B7T220_VAULI)

HSP 1 Score: 63.2 bits (152), Expect = 1.410e-12
Identity = 29/37 (78.38%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
            MIEPLLFG+VLG++PVT+IGLF AA+LQYRRGN++GL
Sbjct:    1 MIEPLLFGIVLGIVPVTIIGLFIAAYLQYRRGNQIGL 37
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BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: PETG_GUITH (Cytochrome b6-f complex subunit 5 n=13 Tax=Eukaryota TaxID=2759 RepID=PETG_GUITH)

HSP 1 Score: 62.4 bits (150), Expect = 2.850e-12
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
            MIEPLLFG+VLGLIPVTL GLF AA+LQYRRGN+ GL
Sbjct:    1 MIEPLLFGIVLGLIPVTLTGLFVAAYLQYRRGNQFGL 37
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BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: A0A1C9CCX2_9RHOD (Cytochrome b6-f complex subunit 5 n=1 Tax=Bangiopsis subsimplex TaxID=139980 RepID=A0A1C9CCX2_9RHOD)

HSP 1 Score: 62.4 bits (150), Expect = 2.850e-12
Identity = 29/37 (78.38%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
            M+EPLL G+VLGLIPVTL+GLFSAA+LQYRRGN++G+
Sbjct:    1 MVEPLLSGIVLGLIPVTLLGLFSAAYLQYRRGNQIGM 37
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BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: W0RYK9_PORPP (Cytochrome b6-f complex subunit 5 n=15 Tax=cellular organisms TaxID=131567 RepID=W0RYK9_PORPP)

HSP 1 Score: 62.0 bits (149), Expect = 4.060e-12
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
            M+EPLL G++LGLIPVTLIGLF AA+LQYRRGN+LGL
Sbjct:    1 MVEPLLSGIILGLIPVTLIGLFVAAYLQYRRGNQLGL 37
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BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: B2XT41_HETAK (Cytochrome b6-f complex subunit 5 n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=B2XT41_HETAK)

HSP 1 Score: 62.0 bits (149), Expect = 4.060e-12
Identity = 30/37 (81.08%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
            MIEPLLFG+VLG+IPVTL GLF AA+LQY+RGN+LGL
Sbjct:    1 MIEPLLFGIVLGMIPVTLTGLFVAAYLQYKRGNQLGL 37
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BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: A0A1C9CFS4_9FLOR (Cytochrome b6-f complex subunit 5 n=2 Tax=Hildenbrandia TaxID=31479 RepID=A0A1C9CFS4_9FLOR)

HSP 1 Score: 61.6 bits (148), Expect = 5.770e-12
Identity = 29/37 (78.38%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
            MIEPLLFG+VLGLIP+TL+GLF AA+LQ+RR NKLG+
Sbjct:    1 MIEPLLFGIVLGLIPITLLGLFVAAYLQFRRANKLGI 37
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BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: K8GJW3_9CYAN (Cytochrome b6-f complex subunit 5 n=6 Tax=Bacteria TaxID=2 RepID=K8GJW3_9CYAN)

HSP 1 Score: 60.8 bits (146), Expect = 1.170e-11
Identity = 30/37 (81.08%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
            MIEP+L G+VLGLIPVTL GLF AA+LQYRRGN+LGL
Sbjct:    1 MIEPILLGIVLGLIPVTLAGLFVAAYLQYRRGNELGL 37
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BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: A0A098TN63_9CYAN (Cytochrome b6-f complex subunit 5 n=1 Tax=Neosynechococcus sphagnicola sy1 TaxID=1497020 RepID=A0A098TN63_9CYAN)

HSP 1 Score: 60.8 bits (146), Expect = 1.170e-11
Identity = 29/37 (78.38%), Postives = 35/37 (94.59%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
            M+EPLL G+V+GLIPVTL+GLF AA+LQYRRGN+LGL
Sbjct:    1 MVEPLLTGIVMGLIPVTLLGLFVAAYLQYRRGNQLGL 37
[Close]
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Match: M1K3W3_DIALT (Cytochrome b6-f complex subunit 5 n=2 Tax=Pavlovaceae TaxID=418969 RepID=M1K3W3_DIALT)

HSP 1 Score: 60.1 bits (144), Expect = 2.350e-11
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL 111
            M+EPLL G+VLGLIPVT +GLF AAFLQYRRGN+LG+
Sbjct:    1 MVEPLLSGIVLGLIPVTALGLFVAAFLQYRRGNQLGI 37
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10613.399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D1J759_ECTSI2.520e-1597.30Cytochrome b6-f complex subunit 5 n=52 Tax=Phaeoph... [more]
B7T220_VAULI1.410e-1278.38Cytochrome b6-f complex subunit 5 n=1 Tax=Vaucheri... [more]
PETG_GUITH2.850e-1283.78Cytochrome b6-f complex subunit 5 n=13 Tax=Eukaryo... [more]
A0A1C9CCX2_9RHOD2.850e-1278.38Cytochrome b6-f complex subunit 5 n=1 Tax=Bangiops... [more]
W0RYK9_PORPP4.060e-1281.08Cytochrome b6-f complex subunit 5 n=15 Tax=cellula... [more]
B2XT41_HETAK4.060e-1281.08Cytochrome b6-f complex subunit 5 n=2 Tax=Heterosi... [more]
A0A1C9CFS4_9FLOR5.770e-1278.38Cytochrome b6-f complex subunit 5 n=2 Tax=Hildenbr... [more]
K8GJW3_9CYAN1.170e-1181.08Cytochrome b6-f complex subunit 5 n=6 Tax=Bacteria... [more]
A0A098TN63_9CYAN1.170e-1178.38Cytochrome b6-f complex subunit 5 n=1 Tax=Neosynec... [more]
M1K3W3_DIALT2.350e-1178.38Cytochrome b6-f complex subunit 5 n=2 Tax=Pavlovac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig10613contigH-paniculata_contig10613:5184..5297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue8.7e-11
Seed eggNOG ortholog2880.D1J759
Preferred namepetG
KEGG koko:K02640
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00162
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.photosynthesis
EggNOG OGs2E6DA@1,2SD3G@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size114
Cds size114
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928766.3597507-CDS-H-paniculata_contig10613:5183..52971622928766.3597507-CDS-H-paniculata_contig10613:5183..5297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10613 5184..5297 -
1691480611.1774075-CDS-H-paniculata_contig10613:5183..52971691480611.1774075-CDS-H-paniculata_contig10613:5183..5297Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig10613 5184..5297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig10613.399.1prot_H-paniculata_contig10613.399.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig10613 5184..5297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig10613.399.1

>prot_H-paniculata_contig10613.399.1 ID=prot_H-paniculata_contig10613.399.1|Name=mRNA_H-paniculata_contig10613.399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
MIEPLLFGMVLGLIPVTLIGLFSAAFLQYRRGNKLGL*
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mRNA from alignment at H-paniculata_contig10613:5184..5297-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig10613.399.1 ID=mRNA_H-paniculata_contig10613.399.1|Name=mRNA_H-paniculata_contig10613.399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=114bp|location=Sequence derived from alignment at H-paniculata_contig10613:5184..5297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGAACCTCTTCTTTTTGGTATGGTATTAGGTCTAATTCCAGTAAC
TTTAATTGGTTTATTTAGTGCGGCTTTTCTACAATATCGTCGTGGAAATA
AGCTTGGTTTATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig10613:5184..5297-

>mRNA_H-paniculata_contig10613.399.1 ID=mRNA_H-paniculata_contig10613.399.1|Name=mRNA_H-paniculata_contig10613.399.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at H-paniculata_contig10613:5184..5297- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATTGAACCTCTTCTTTTTGGTATGGTATTAGGTCTAATTCCAGTAAC
TTTAATTGGTTTATTTAGTGCGGCTTTTCTACAATATCGTCGTGGAAATA
AGCTTGGTTTATAAATGATTGAACCTCTTCTTTTTGGTATGGTATTAGGT
CTAATTCCAGTAACTTTAATTGGTTTATTTAGTGCGGCTTTTCTACAATA
TCGTCGTGGAAATAAGCTTGGTTTATAA
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