mRNA_H-paniculata_contig17152.3990.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA) HSP 1 Score: 114 bits (284), Expect = 8.920e-27 Identity = 57/131 (43.51%), Postives = 83/131 (63.36%), Query Frame = 1
Query: 1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGRR-EKVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLKIS 390
LKQS R WN + F+ G RS DSC+Y + +GG LL+ YVDD++IA + ++D LK +S F MKD+G+ SR+LGI+++RDR G + +SQ SY+ +V+KR+ E + V TP G K+S
Sbjct: 992 LKQSPRLWNKKFNQFITGEKFIRSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLS 1120
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN) HSP 1 Score: 108 bits (269), Expect = 9.340e-25 Identity = 53/131 (40.46%), Postives = 79/131 (60.31%), Query Frame = 1
Query: 1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAG-RREKVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLKIS 390
LKQ R W D F++G G DR D C+Y + G L + +YVDD++IA ++++ ELK +S F MKDLG+ ++LG+E+RRDR G +T+SQ Y+ +VLKR+ C+ + TP K+S
Sbjct: 918 LKQYPRQWYKRFDSFMIGHGYDRCSYDECVYLRKFPDGSF-LYLVLYVDDMLIAAPNKDQIRELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPLAPHFKLS 1047
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.480e-23 Identity = 51/126 (40.48%), Postives = 79/126 (62.70%), Query Frame = 1
Query: 1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGRREK-VDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEG 375
L QS NW + +D FLV IG +D+C+Y D + + + +YVDDL++AG + + +K ++QRF+M D+G VLG+E++RDR GT+TISQ +Y + +L+R+G EC+ TP G
Sbjct: 611 LAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHD--DVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYG 734
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A6D2KZJ0_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KZJ0_9BRAS) HSP 1 Score: 103 bits (257), Expect = 1.500e-23 Identity = 53/131 (40.46%), Postives = 82/131 (62.60%), Query Frame = 1
Query: 1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGRR-EKVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLKIS 390
LKQS R WN + F++G RS DSC+Y + + G LL+ YVDD+++A + ++ +LK +S F MKD+G SR+LGI++RRDR G + +SQ SY+ +V++++ E + V TP G K+S
Sbjct: 56 LKQSPRLWNKKFNQFIIGEKFVRSHQDSCVYVKKVESGYMYLLL--YVDDILMAAKDIAEIVKLKSALSSEFEMKDMGPASRILGIDIRRDREAGVLYLSQASYLEKVVQKFKMKEAKSVNTPMGGHFKLS 184
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A2K3N065_TRIPR (Copia LTR rider n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N065_TRIPR) HSP 1 Score: 104 bits (260), Expect = 1.530e-23 Identity = 53/131 (40.46%), Postives = 82/131 (62.60%), Query Frame = 1
Query: 1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGRR-EKVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLKIS 390
LKQS R WN D F+ I RS D C+YF R G + +++ +YVDD++IA E V +K +++ F MKDLG+ SR+LGI++RRDR + +SQ +Y+R++L+++G + V TP + K+S
Sbjct: 947 LKQSPRQWNRRFDKFMARISFIRSQFDHCVYF-RFRPGNSFVILLLYVDDILIASNNVEDVTRVKAELNKEFDMKDLGAASRILGIDIRRDRKKSKLCLSQEAYLRKILEKFGMSNSKPVVTPTNPQFKLS 1076
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA) HSP 1 Score: 104 bits (260), Expect = 1.530e-23 Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 1
Query: 1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGRRE-KVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAE 372
LKQS R WNN LD+ L +G RS ++CLY + G + + AVYVDDL+I E ++ +K IS +F M D GS S LG+E++RD G +++ Q +Y+R +LK YG CR V TP +
Sbjct: 970 LKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQGSSYI--AVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLD 1092
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A6A3A9V0_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A9V0_HIBSY) HSP 1 Score: 103 bits (257), Expect = 3.900e-23 Identity = 51/131 (38.93%), Postives = 83/131 (63.36%), Query Frame = 1
Query: 1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGR-REKVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLKIS 390
LKQS R W D+F++ IG RS DSC+Y + D E ++ + +YVDD+++A R +E+V ++K ++ F MKDLG +++LG+E+ RDR + +SQ SY+++VL R+ E + V TP ++S
Sbjct: 1032 LKQSPRQWYKRFDEFMLRIGFARSSYDSCVYMKKQDD-EISVFLLLYVDDMLVASRSKEEVQKIKGMLNSEFDMKDLGPATKILGMEITRDRKKNNLFLSQKSYIQKVLMRFNMHEAKQVTTPIGQHFRLS 1161
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A2Z7CTV2_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CTV2_9LAMI) HSP 1 Score: 99.0 bits (245), Expect = 5.240e-23 Identity = 49/131 (37.40%), Postives = 83/131 (63.36%), Query Frame = 1
Query: 1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGR-REKVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLKIS 390
LKQS R W D F+ IG RS D+C+Y ++ G E+ + + +YVDD++IA + R ++D +K + F MKD+G+ SR+LGI+++R+R GT+ +SQ +Y+ +VL R+ + + V P + ++S
Sbjct: 47 LKQSPRQWYIRFDQFMEEIGFSRSKFDTCVYV-KNMGTESQVYLMLYVDDMLIASKDRRELDRIKGLLGTEFEMKDMGAASRILGIDIKRNRKEGTLFLSQEAYISKVLNRFSMKDSKPVTVPLGPQFRLS 176
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: UPI00142E31C7 (uncharacterized protein LOC103832254 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E31C7) HSP 1 Score: 103 bits (256), Expect = 5.320e-23 Identity = 51/130 (39.23%), Postives = 79/130 (60.77%), Query Frame = 1
Query: 1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGRREK-VDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLKI 387
LKQS R WN D F+ G +RS D C+Y D L+ +YVDD++IA + K + +K ++ + F MKDLG+ SR+LG+++ RDR GT+ +SQG Y+++VL+ + E + V TP + K+
Sbjct: 976 LKQSPRQWNRRFDSFMKQQGFERSAYDPCVYMKGSDSSHMVYLL-IYVDDMLIASKDSKEIKRIKDSLKREFEMKDLGAASRILGMDIIRDRKKGTLKLSQGKYLQKVLETFNMAESKAVVTPIGPQFKL 1104
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT) HSP 1 Score: 102 bits (255), Expect = 6.510e-23 Identity = 51/129 (39.53%), Postives = 81/129 (62.79%), Query Frame = 1
Query: 1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGRR-EKVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLK 384
LKQS RNWN LD++L+ G R+P D C+Y + GE +++ ++VDDL+IA +K+ + K N+ +FRMKDLG S LGI ++ NG I ++Q Y++++L R+G +C+ TP E + +
Sbjct: 323 LKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFE 447 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17152.3990.1 >prot_H-paniculata_contig17152.3990.1 ID=prot_H-paniculata_contig17152.3990.1|Name=mRNA_H-paniculata_contig17152.3990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDback to top mRNA from alignment at H-paniculata_contig17152:4784..5173- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17152.3990.1 ID=mRNA_H-paniculata_contig17152.3990.1|Name=mRNA_H-paniculata_contig17152.3990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=390bp|location=Sequence derived from alignment at H-paniculata_contig17152:4784..5173- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17152:4784..5173- >mRNA_H-paniculata_contig17152.3990.1 ID=mRNA_H-paniculata_contig17152.3990.1|Name=mRNA_H-paniculata_contig17152.3990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig17152:4784..5173- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |