mRNA_H-paniculata_contig17152.3990.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17152.3990.1
Unique NamemRNA_H-paniculata_contig17152.3990.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A1J3F7G4_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3F7G4_NOCCA)

HSP 1 Score: 114 bits (284), Expect = 8.920e-27
Identity = 57/131 (43.51%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGRR-EKVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLKIS 390
            LKQS R WN   + F+ G    RS  DSC+Y  + +GG   LL+  YVDD++IA +   ++D LK  +S  F MKD+G+ SR+LGI+++RDR  G + +SQ SY+ +V+KR+   E + V TP  G  K+S
Sbjct:  992 LKQSPRLWNKKFNQFITGEKFIRSHQDSCVYVKKVEGGYVYLLL--YVDDMLIAAKEMAEIDRLKSALSSEFEMKDMGAASRILGIDIKRDRKEGVLYLSQSSYLEKVVKRFNMGEAKSVNTPIGGHFKLS 1120          
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A2U1MW82_ARTAN (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1MW82_ARTAN)

HSP 1 Score: 108 bits (269), Expect = 9.340e-25
Identity = 53/131 (40.46%), Postives = 79/131 (60.31%), Query Frame = 1
Query:    1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAG-RREKVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLKIS 390
            LKQ  R W    D F++G G DR   D C+Y  +   G   L + +YVDD++IA   ++++ ELK  +S  F MKDLG+  ++LG+E+RRDR  G +T+SQ  Y+ +VLKR+    C+ + TP     K+S
Sbjct:  918 LKQYPRQWYKRFDSFMIGHGYDRCSYDECVYLRKFPDGSF-LYLVLYVDDMLIAAPNKDQIRELKDQLSNEFDMKDLGAAKKILGMEIRRDRKMGKLTLSQSDYISKVLKRFNMSNCKPILTPLAPHFKLS 1047          
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 1.480e-23
Identity = 51/126 (40.48%), Postives = 79/126 (62.70%), Query Frame = 1
Query:    1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGRREK-VDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEG 375
            L QS  NW + +D FLV IG     +D+C+Y    D  +  + + +YVDDL++AG   + +  +K  ++QRF+M D+G    VLG+E++RDR  GT+TISQ +Y + +L+R+G  EC+   TP  G
Sbjct:  611 LAQSPSNWFHTIDPFLVEIGFVPLKSDTCVYLYDHD--DVQVYLTLYVDDLLLAGNNSRAISMIKKKLTQRFKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYG 734          
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A6D2KZJ0_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KZJ0_9BRAS)

HSP 1 Score: 103 bits (257), Expect = 1.500e-23
Identity = 53/131 (40.46%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGRR-EKVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLKIS 390
            LKQS R WN   + F++G    RS  DSC+Y  + + G   LL+  YVDD+++A +   ++ +LK  +S  F MKD+G  SR+LGI++RRDR  G + +SQ SY+ +V++++   E + V TP  G  K+S
Sbjct:   56 LKQSPRLWNKKFNQFIIGEKFVRSHQDSCVYVKKVESGYMYLLL--YVDDILMAAKDIAEIVKLKSALSSEFEMKDMGPASRILGIDIRRDREAGVLYLSQASYLEKVVQKFKMKEAKSVNTPMGGHFKLS 184          
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A2K3N065_TRIPR (Copia LTR rider n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N065_TRIPR)

HSP 1 Score: 104 bits (260), Expect = 1.530e-23
Identity = 53/131 (40.46%), Postives = 82/131 (62.60%), Query Frame = 1
Query:    1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGRR-EKVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLKIS 390
            LKQS R WN   D F+  I   RS  D C+YF R   G + +++ +YVDD++IA    E V  +K  +++ F MKDLG+ SR+LGI++RRDR    + +SQ +Y+R++L+++G    + V TP   + K+S
Sbjct:  947 LKQSPRQWNRRFDKFMARISFIRSQFDHCVYF-RFRPGNSFVILLLYVDDILIASNNVEDVTRVKAELNKEFDMKDLGAASRILGIDIRRDRKKSKLCLSQEAYLRKILEKFGMSNSKPVVTPTNPQFKLS 1076          
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA)

HSP 1 Score: 104 bits (260), Expect = 1.530e-23
Identity = 54/125 (43.20%), Postives = 76/125 (60.80%), Query Frame = 1
Query:    1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGRRE-KVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAE 372
            LKQS R WNN LD+ L  +G  RS  ++CLY  +   G + +  AVYVDDL+I    E ++  +K  IS +F M D GS S  LG+E++RD   G +++ Q +Y+R +LK YG   CR V TP +
Sbjct:  970 LKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQGSSYI--AVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLD 1092          
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A6A3A9V0_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A9V0_HIBSY)

HSP 1 Score: 103 bits (257), Expect = 3.900e-23
Identity = 51/131 (38.93%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGR-REKVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLKIS 390
            LKQS R W    D+F++ IG  RS  DSC+Y  + D  E ++ + +YVDD+++A R +E+V ++K  ++  F MKDLG  +++LG+E+ RDR    + +SQ SY+++VL R+   E + V TP     ++S
Sbjct: 1032 LKQSPRQWYKRFDEFMLRIGFARSSYDSCVYMKKQDD-EISVFLLLYVDDMLVASRSKEEVQKIKGMLNSEFDMKDLGPATKILGMEITRDRKKNNLFLSQKSYIQKVLMRFNMHEAKQVTTPIGQHFRLS 1161          
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A2Z7CTV2_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CTV2_9LAMI)

HSP 1 Score: 99.0 bits (245), Expect = 5.240e-23
Identity = 49/131 (37.40%), Postives = 83/131 (63.36%), Query Frame = 1
Query:    1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGR-REKVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLKIS 390
            LKQS R W    D F+  IG  RS  D+C+Y  ++ G E+ + + +YVDD++IA + R ++D +K  +   F MKD+G+ SR+LGI+++R+R  GT+ +SQ +Y+ +VL R+   + + V  P   + ++S
Sbjct:   47 LKQSPRQWYIRFDQFMEEIGFSRSKFDTCVYV-KNMGTESQVYLMLYVDDMLIASKDRRELDRIKGLLGTEFEMKDMGAASRILGIDIKRNRKEGTLFLSQEAYISKVLNRFSMKDSKPVTVPLGPQFRLS 176          
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: UPI00142E31C7 (uncharacterized protein LOC103832254 n=1 Tax=Brassica campestris TaxID=3711 RepID=UPI00142E31C7)

HSP 1 Score: 103 bits (256), Expect = 5.320e-23
Identity = 51/130 (39.23%), Postives = 79/130 (60.77%), Query Frame = 1
Query:    1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGRREK-VDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLKI 387
            LKQS R WN   D F+   G +RS  D C+Y    D      L+ +YVDD++IA +  K +  +K ++ + F MKDLG+ SR+LG+++ RDR  GT+ +SQG Y+++VL+ +   E + V TP   + K+
Sbjct:  976 LKQSPRQWNRRFDSFMKQQGFERSAYDPCVYMKGSDSSHMVYLL-IYVDDMLIASKDSKEIKRIKDSLKREFEMKDLGAASRILGMDIIRDRKKGTLKLSQGKYLQKVLETFNMAESKAVVTPIGPQFKL 1104          
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Match: A0A6S7HLY2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HLY2_PARCT)

HSP 1 Score: 102 bits (255), Expect = 6.510e-23
Identity = 51/129 (39.53%), Postives = 81/129 (62.79%), Query Frame = 1
Query:    1 LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDDLVIAGRR-EKVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQGSYMREVLKRYGFDECRGVRTPAEGKLK 384
            LKQS RNWN  LD++L+  G  R+P D C+Y  +   GE  +++ ++VDDL+IA    +K+ + K N+  +FRMKDLG  S  LGI  ++   NG I ++Q  Y++++L R+G  +C+   TP E + +
Sbjct:  323 LKQSGRNWNRVLDEYLISDGFIRNPVDHCVY--QKQTGEDIIIVVIWVDDLIIASSNTDKISQFKENMKSKFRMKDLGEISYFLGISFKQG--NGVIKMNQKRYIQKILDRFGMSDCKPRTTPCEQRFE 447          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17152.3990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1J3F7G4_NOCCA8.920e-2743.51Retrovirus-related Pol polyprotein from transposon... [more]
A0A2U1MW82_ARTAN9.340e-2540.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5KL37_9PHAE1.480e-2340.48Integrase catalytic domain-containing protein n=1 ... [more]
A0A6D2KZJ0_9BRAS1.500e-2340.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3N065_TRIPR1.530e-2340.46Copia LTR rider n=1 Tax=Trifolium pratense TaxID=5... [more]
W8BWJ0_CERCA1.530e-2343.20Retrovirus-related Pol polyprotein from transposon... [more]
A0A6A3A9V0_HIBSY3.900e-2338.93Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A2Z7CTV2_9LAMI5.240e-2337.40Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00142E31C75.320e-2339.23uncharacterized protein LOC103832254 n=1 Tax=Brass... [more]
A0A6S7HLY2_PARCT6.510e-2339.53Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17152contigH-paniculata_contig17152:4784..5173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue4.4e-22
Seed eggNOG ortholog164328.Phyra87462
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHJF@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929354.4843466-CDS-H-paniculata_contig17152:4783..51731622929354.4843466-CDS-H-paniculata_contig17152:4783..5173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17152 4784..5173 -
1691480827.5454726-CDS-H-paniculata_contig17152:4783..51731691480827.5454726-CDS-H-paniculata_contig17152:4783..5173Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17152 4784..5173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17152.3990.1prot_H-paniculata_contig17152.3990.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17152 4784..5173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17152.3990.1

>prot_H-paniculata_contig17152.3990.1 ID=prot_H-paniculata_contig17152.3990.1|Name=mRNA_H-paniculata_contig17152.3990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
LKQSDRNWNNNLDDFLVGIGLDRSPTDSCLYFSRDDGGEANLLMAVYVDD
LVIAGRREKVDELKHNISQRFRMKDLGSFSRVLGIEVRRDRPNGTITISQ
GSYMREVLKRYGFDECRGVRTPAEGKLKIS
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mRNA from alignment at H-paniculata_contig17152:4784..5173-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17152.3990.1 ID=mRNA_H-paniculata_contig17152.3990.1|Name=mRNA_H-paniculata_contig17152.3990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=390bp|location=Sequence derived from alignment at H-paniculata_contig17152:4784..5173- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAGCAGAGCGACCGAAACTGGAATAACAATCTTGACGATTTTCTTGT TGGGATAGGACTCGACCGTTCCCCTACCGACTCATGCTTGTACTTTTCCC GCGACGATGGGGGAGAGGCAAACCTTCTGATGGCTGTGTATGTTGACGAC CTGGTCATTGCTGGCCGTCGTGAGAAAGTAGACGAGTTAAAGCATAACAT AAGTCAGCGTTTTAGGATGAAAGACTTGGGCTCTTTCTCGCGCGTGTTGG GAATAGAAGTACGACGTGACCGCCCTAATGGTACCATAACCATCTCGCAG GGTAGCTACATGCGCGAGGTACTAAAAAGATACGGTTTTGACGAGTGTCG AGGAGTACGCACCCCTGCAGAGGGAAAATTGAAGATTTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig17152:4784..5173-

>mRNA_H-paniculata_contig17152.3990.1 ID=mRNA_H-paniculata_contig17152.3990.1|Name=mRNA_H-paniculata_contig17152.3990.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig17152:4784..5173- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAGCAGAGCGACCGAAACTGGAATAACAATCTTGACGATTTTCTTGT
TGGGATAGGACTCGACCGTTCCCCTACCGACTCATGCTTGTACTTTTCCC
GCGACGATGGGGGAGAGGCAAACCTTCTGATGGCTGTGTATGTTGACGAC
CTGGTCATTGCTGGCCGTCGTGAGAAAGTAGACGAGTTAAAGCATAACAT
AAGTCAGCGTTTTAGGATGAAAGACTTGGGCTCTTTCTCGCGCGTGTTGG
GAATAGAAGTACGACGTGACCGCCCTAATGGTACCATAACCATCTCGCAG
GGTAGCTACATGCGCGAGGTACTAAAAAGATACGGTTTTGACGAGTGTCG
AGGAGTACGCACCCCTGCAGAGGGAAAATTGAAGATTTCGCTCAAGCAGA
GCGACCGAAACTGGAATAACAATCTTGACGATTTTCTTGTTGGGATAGGA
CTCGACCGTTCCCCTACCGACTCATGCTTGTACTTTTCCCGCGACGATGG
GGGAGAGGCAAACCTTCTGATGGCTGTGTATGTTGACGACCTGGTCATTG
CTGGCCGTCGTGAGAAAGTAGACGAGTTAAAGCATAACATAAGTCAGCGT
TTTAGGATGAAAGACTTGGGCTCTTTCTCGCGCGTGTTGGGAATAGAAGT
ACGACGTGACCGCCCTAATGGTACCATAACCATCTCGCAGGGTAGCTACA
TGCGCGAGGTACTAAAAAGATACGGTTTTGACGAGTGTCGAGGAGTACGC
ACCCCTGCAGAGGGAAAATTGAAGATTTCG
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