mRNA_H-paniculata_contig17124.3979.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17124.3979.1
Unique NamemRNA_H-paniculata_contig17124.3979.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A1V9YH81_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YH81_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 2.920e-17
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 1
Query:   31 EPKNHREAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
            EP+N REA A P+ + W    + EI  LI NG W  V +P    +V    +YK K    G V+++K RL A G  Q  G  F +   P     S +++L++AAI D  + H+D  QAY++A +D
Sbjct: 1116 EPRNPREALAGPQAKEWETAMQAEIDNLIQNGTWELVAKPVGVNIVGHKWVYKIKFDNVGEVERFKARLVAQGFSQRYGVDFTETFSPVIRQPSVRVLLVLAAILDVPVLHLDVPQAYVKAKLD 1239          
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A4S4M1W0_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1W0_9APHY)

HSP 1 Score: 86.7 bits (213), Expect = 3.960e-17
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 1
Query:   49 EAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKL-VVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
            EA+  P+W  W      EI+ L+ N  W  VERP + + VV + ++ + K    G +DKYK RL A G  Q+ G  + +   P    +S +++L IAA  +W+++  DF  AYL +P+D
Sbjct: 1159 EARKRPDWPKWQAAIGAEIENLVANNTWTVVERPPDDVNVVDSKIVLRVKKNAAGEIDKYKARLVARGFTQVHGVDYFETFAPVAKLSSFRLLLAIAARNNWDIKSFDFSSAYLNSPLD 1277          
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL)

HSP 1 Score: 85.5 bits (210), Expect = 1.010e-16
Identity = 41/118 (34.75%), Postives = 60/118 (50.85%), Query Frame = 1
Query:   49 EAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
            EA+  P+W HW      E+  L   G W  V RP+ + VV    + + K    G ++KYK RL A G  Q++G  + +   P    AS +++L IAA  DW++   DF  AYL   +D
Sbjct: 1067 EARRRPDWPHWQAAINTELDSLKSAGTWTVVPRPSGRNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDIDMFDFNSAYLNGELD 1184          
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A8H7NVE6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NVE6_9APHY)

HSP 1 Score: 85.1 bits (209), Expect = 1.290e-16
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 1
Query:   43 HREAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
            +REA A PE E W    E E+  +   G +  VE+P    VV  + + ++K  E+  V K+K RL A G  Q+ G  + Q + P    AS +++L +AA  DWE+  +DF+ AYL   +D
Sbjct:  223 YREAMAGPESEDWRVAMEEELAKIEAMGTYELVEKPKGANVVGCVWVLRKKRDENNEVAKFKARLCAQGFSQVHGVDYDQTAAPTARLASLRLVLALAAANDWEVHQIDFKNAYLNGDLD 342          
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A8H7TXH5_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7TXH5_9APHY)

HSP 1 Score: 82.8 bits (203), Expect = 8.700e-16
Identity = 40/120 (33.33%), Postives = 67/120 (55.83%), Query Frame = 1
Query:   43 HREAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
            +REA A PE + W    + E+  +   G +  VE P +  +V ++ + K+K  E  NV K+K RL A G  Q+ G  + + + P  + +S +++L +AA  DWE+  +DF+ AYL   +D
Sbjct:  719 YREAMAGPECDDWKIAMQEELAKIEAMGTYELVEPPKDVNIVGSVWVLKKKRDEHNNVAKFKARLCAQGFSQVYGIDYVETAAPTASLSSLRLVLALAAANDWEIHQIDFKNAYLNGDLD 838          
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A1E1KFU7_9HELO (Uncharacterized protein n=1 Tax=Rhynchosporium commune TaxID=914237 RepID=A0A1E1KFU7_9HELO)

HSP 1 Score: 82.0 bits (201), Expect = 1.550e-15
Identity = 37/124 (29.84%), Postives = 66/124 (53.23%), Query Frame = 1
Query:   31 EPKNHREAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
            +P++++EA + PE   W    E E   L+ N  W  V  P ++  ++T   +++K+G +G + +YK R+ A G +QI+GF F +       AAS +++  + A+  W    +D   A+L   ID
Sbjct:  282 DPQSYKEALSGPEAPLWKEAIEAEYNSLLQNRTWKVVRMPKDRKPLTTKWTFRKKLGGEGEITRYKARMVARGFQQIEGFDFTETYSNVVKAASYRILFAMTALYGWHCYQIDITTAFLNGDID 405          
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A6A3A122_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A122_HIBSY)

HSP 1 Score: 79.7 bits (195), Expect = 1.050e-14
Identity = 37/109 (33.94%), Postives = 55/109 (50.46%), Query Frame = 1
Query:   76 HW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
            HW    + E   L+ N  W  V+ P  ++ V    L+K K   DG+V++YK RL A G  Q+  + F     P    ++  ++L +A   DWELRHVD   A+L   +D
Sbjct:  915 HWKEAVQSEYDALLKNNTWSLVKLPAGRIPVGCKWLFKLKRNPDGSVNRYKARLIAKGYSQVTSYDFTDMFSPVLKFSTFNVVLALAVSNDWELRHVDVNNAFLNGDLD 1023          
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A2P6RXR5_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RXR5_ROSCH)

HSP 1 Score: 79.3 bits (194), Expect = 1.420e-14
Identity = 41/125 (32.80%), Postives = 65/125 (52.00%), Query Frame = 1
Query:   25 PVEPKNHREAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPI 399
            PVEPK+ + A   PEW+        EI  L     W  V  P  K +V +  +Y+ K   DG+V ++K RL A G  Q KG  + +   P    ++ +++L +AA+ +WELR +D + A+L   +
Sbjct:  982 PVEPKSFKAAVGVPEWDI---AMNEEIDALKKQATWELVPFPEGKNIVGSKWVYRIKKNPDGSVSRFKARLVAQGYSQEKGLDYDETFSPVVRHSTVRIILSLAAMNNWELRQLDVKNAFLHGDL 1103          
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A445H2V6_GLYSO (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445H2V6_GLYSO)

HSP 1 Score: 79.0 bits (193), Expect = 1.790e-14
Identity = 38/125 (30.40%), Postives = 62/125 (49.60%), Query Frame = 1
Query:   28 VEPKNHREAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
            VEP ++ EA      + W +    E+Q L  N  W     P +K  +    +YK K   DG++++YK RL A G  Q++G  +    FP     + +++L +AA+  W LR +D   A+L   +D
Sbjct:    7 VEPSSYAEASQH---DCWIKAMNAELQALQSNDTWRLTPLPPHKTAIGCRWIYKIKHRVDGSIERYKARLVAKGYTQMEGLDYLDTFFPVAKLTTVRLLLALAALNQWHLRQLDVNNAFLHGELD 128          
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A4Y1QYH0_PRUDU (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QYH0_PRUDU)

HSP 1 Score: 78.6 bits (192), Expect = 2.620e-14
Identity = 41/124 (33.06%), Postives = 65/124 (52.42%), Query Frame = 1
Query:   31 EPKNHREAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
            EP + + A  S EW    +  + EI  L   G W+ V  P +K ++ +  +YK K   DG+V +YK RL A G  Q  GF F +   P     + +++L IAA+  W+LR +D + A+L   ++
Sbjct:  553 EPSSFKVASFSSEWR---QAMKEEIDALHMQGTWILVPSPGDKNIIGSKWVYKIKRNPDGSVGRYKARLVAQGFSQEPGFDFGETFSPVVRHTTVRLVLSIAAMNQWKLRQLDVKNAFLHGDLE 673          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1V9YH81_9STRA2.920e-1737.10Retrovirus-related Pol polyprotein from transposon... [more]
A0A4S4M1W0_9APHY3.960e-1735.29Uncharacterized protein (Fragment) n=1 Tax=Antrodi... [more]
A0A146H565_MYCCL1.010e-1634.75Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473... [more]
A0A8H7NVE6_9APHY1.290e-1635.83Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H7TXH5_9APHY8.700e-1633.33Integrase catalytic domain-containing protein n=1 ... [more]
A0A1E1KFU7_9HELO1.550e-1529.84Uncharacterized protein n=1 Tax=Rhynchosporium com... [more]
A0A6A3A122_HIBSY1.050e-1433.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A2P6RXR5_ROSCH1.420e-1432.80Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A445H2V6_GLYSO1.790e-1430.40Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y1QYH0_PRUDU2.620e-1433.06Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17124contigH-paniculata_contig17124:4171..4575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score64.7
Seed ortholog evalue2.6e-08
Seed eggNOG ortholog3641.EOY05030
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size405
Cds size273
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929352.4822333-UTR-H-paniculata_contig17124:4170..43021622929352.4822333-UTR-H-paniculata_contig17124:4170..4302Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17124 4171..4302 +
1691480826.732425-UTR-H-paniculata_contig17124:4170..43021691480826.732425-UTR-H-paniculata_contig17124:4170..4302Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17124 4171..4302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929352.4969866-CDS-H-paniculata_contig17124:4302..45751622929352.4969866-CDS-H-paniculata_contig17124:4302..4575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17124 4303..4575 +
1691480826.7476897-CDS-H-paniculata_contig17124:4302..45751691480826.7476897-CDS-H-paniculata_contig17124:4302..4575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17124 4303..4575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17124.3979.1prot_H-paniculata_contig17124.3979.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17124 4303..4575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17124.3979.1

>prot_H-paniculata_contig17124.3979.1 ID=prot_H-paniculata_contig17124.3979.1|Name=mRNA_H-paniculata_contig17124.3979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQ
ASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID*
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mRNA from alignment at H-paniculata_contig17124:4171..4575+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17124.3979.1 ID=mRNA_H-paniculata_contig17124.3979.1|Name=mRNA_H-paniculata_contig17124.3979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig17124:4171..4575+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGAAGAACTGAGGAGGGACCTCCCCGTGGAGCCCAAGAACCACCGGGA GGCGCAGGCGTCGCCGGAGTGGGAGCACTGGTAAAGAGTGGAGGAAGTCG AGATACAAGGCCTAATCCACAACGGGGTTTGGATGCAGGTGGAGCGCCCG AATAACAAGCTGGTCGTGAGCACGATGATGCTCTACAAAAGGAAAATCGG CGAGGACGGTAACGTGGACAAATACAAGTGTCGCCTGTTCGCCCATGGGA ACCGCCAGATCAAGGGCTTCCACTTCCAGCAAGCTTCGTTCCCTGCACCC GCAGCGGCCAGCACAAAAATGATGTTGTTAATTGCGGCAATCCAGGACTG GGAGCTTAGGCACGTCGACTTTGAACAAGCGTATCTGCAGGCGCCCATCG ACTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig17124:4171..4575+

>mRNA_H-paniculata_contig17124.3979.1 ID=mRNA_H-paniculata_contig17124.3979.1|Name=mRNA_H-paniculata_contig17124.3979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig17124:4171..4575+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGGTGGAGCGCCCGAATAACAAGCTGGTCGTGAGCACGATGATGCT
CTACAAAAGGAAAATCGGCGAGGACGGTAACGTGGACAAATACAAGTGTC
GCCTGTTCGCCCATGGGAACCGCCAGATCAAGGGCTTCCACTTCCAGCAA
GCTTCGTTCCCTGCACCCGCAGCGGCCAGCACAAAAATGATGTTGTTAAT
TGCGGCAATCCAGGACTGGGAGCTTAGGCACGTCGACTTTGAACAAGCGT
ATCTGCAGGCGCCCATCGACTAGATGCAGGTGGAGCGCCCGAATAACAAG
CTGGTCGTGAGCACGATGATGCTCTACAAAAGGAAAATCGGCGAGGACGG
TAACGTGGACAAATACAAGTGTCGCCTGTTCGCCCATGGGAACCGCCAGA
TCAAGGGCTTCCACTTCCAGCAAGCTTCGTTCCCTGCACCCGCAGCGGCC
AGCACAAAAATGATGTTGTTAATTGCGGCAATCCAGGACTGGGAGCTTAG
GCACGTCGACTTTGAACAAGCGTATCTGCAGGCGCCCATCGACTAG
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