mRNA_H-paniculata_contig17124.3979.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A1V9YH81_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YH81_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.920e-17 Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 1
Query: 31 EPKNHREAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
EP+N REA A P+ + W + EI LI NG W V +P +V +YK K G V+++K RL A G Q G F + P S +++L++AAI D + H+D QAY++A +D
Sbjct: 1116 EPRNPREALAGPQAKEWETAMQAEIDNLIQNGTWELVAKPVGVNIVGHKWVYKIKFDNVGEVERFKARLVAQGFSQRYGVDFTETFSPVIRQPSVRVLLVLAAILDVPVLHLDVPQAYVKAKLD 1239
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A4S4M1W0_9APHY (Uncharacterized protein (Fragment) n=1 Tax=Antrodiella citrinella TaxID=2447956 RepID=A0A4S4M1W0_9APHY) HSP 1 Score: 86.7 bits (213), Expect = 3.960e-17 Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 49 EAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKL-VVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
EA+ P+W W EI+ L+ N W VERP + + VV + ++ + K G +DKYK RL A G Q+ G + + P +S +++L IAA +W+++ DF AYL +P+D
Sbjct: 1159 EARKRPDWPKWQAAIGAEIENLVANNTWTVVERPPDDVNVVDSKIVLRVKKNAAGEIDKYKARLVARGFTQVHGVDYFETFAPVAKLSSFRLLLAIAARNNWDIKSFDFSSAYLNSPLD 1277
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A146H565_MYCCL (Polyprotein n=1 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H565_MYCCL) HSP 1 Score: 85.5 bits (210), Expect = 1.010e-16 Identity = 41/118 (34.75%), Postives = 60/118 (50.85%), Query Frame = 1
Query: 49 EAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
EA+ P+W HW E+ L G W V RP+ + VV + + K G ++KYK RL A G Q++G + + P AS +++L IAA DW++ DF AYL +D
Sbjct: 1067 EARRRPDWPHWQAAINTELDSLKSAGTWTVVPRPSGRNVVDCKWVLRIKKNAAGEIEKYKARLVARGFTQVQGVDYYETFAPTAKIASIRLVLAIAARNDWDIDMFDFNSAYLNGELD 1184
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A8H7NVE6_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NVE6_9APHY) HSP 1 Score: 85.1 bits (209), Expect = 1.290e-16 Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 1
Query: 43 HREAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
+REA A PE E W E E+ + G + VE+P VV + + ++K E+ V K+K RL A G Q+ G + Q + P AS +++L +AA DWE+ +DF+ AYL +D
Sbjct: 223 YREAMAGPESEDWRVAMEEELAKIEAMGTYELVEKPKGANVVGCVWVLRKKRDENNEVAKFKARLCAQGFSQVHGVDYDQTAAPTARLASLRLVLALAAANDWEVHQIDFKNAYLNGDLD 342
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A8H7TXH5_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7TXH5_9APHY) HSP 1 Score: 82.8 bits (203), Expect = 8.700e-16 Identity = 40/120 (33.33%), Postives = 67/120 (55.83%), Query Frame = 1
Query: 43 HREAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
+REA A PE + W + E+ + G + VE P + +V ++ + K+K E NV K+K RL A G Q+ G + + + P + +S +++L +AA DWE+ +DF+ AYL +D
Sbjct: 719 YREAMAGPECDDWKIAMQEELAKIEAMGTYELVEPPKDVNIVGSVWVLKKKRDEHNNVAKFKARLCAQGFSQVYGIDYVETAAPTASLSSLRLVLALAAANDWEIHQIDFKNAYLNGDLD 838
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A1E1KFU7_9HELO (Uncharacterized protein n=1 Tax=Rhynchosporium commune TaxID=914237 RepID=A0A1E1KFU7_9HELO) HSP 1 Score: 82.0 bits (201), Expect = 1.550e-15 Identity = 37/124 (29.84%), Postives = 66/124 (53.23%), Query Frame = 1
Query: 31 EPKNHREAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
+P++++EA + PE W E E L+ N W V P ++ ++T +++K+G +G + +YK R+ A G +QI+GF F + AAS +++ + A+ W +D A+L ID
Sbjct: 282 DPQSYKEALSGPEAPLWKEAIEAEYNSLLQNRTWKVVRMPKDRKPLTTKWTFRKKLGGEGEITRYKARMVARGFQQIEGFDFTETYSNVVKAASYRILFAMTALYGWHCYQIDITTAFLNGDID 405
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A6A3A122_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A122_HIBSY) HSP 1 Score: 79.7 bits (195), Expect = 1.050e-14 Identity = 37/109 (33.94%), Postives = 55/109 (50.46%), Query Frame = 1
Query: 76 HW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
HW + E L+ N W V+ P ++ V L+K K DG+V++YK RL A G Q+ + F P ++ ++L +A DWELRHVD A+L +D
Sbjct: 915 HWKEAVQSEYDALLKNNTWSLVKLPAGRIPVGCKWLFKLKRNPDGSVNRYKARLIAKGYSQVTSYDFTDMFSPVLKFSTFNVVLALAVSNDWELRHVDVNNAFLNGDLD 1023
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A2P6RXR5_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6RXR5_ROSCH) HSP 1 Score: 79.3 bits (194), Expect = 1.420e-14 Identity = 41/125 (32.80%), Postives = 65/125 (52.00%), Query Frame = 1
Query: 25 PVEPKNHREAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPI 399
PVEPK+ + A PEW+ EI L W V P K +V + +Y+ K DG+V ++K RL A G Q KG + + P ++ +++L +AA+ +WELR +D + A+L +
Sbjct: 982 PVEPKSFKAAVGVPEWDI---AMNEEIDALKKQATWELVPFPEGKNIVGSKWVYRIKKNPDGSVSRFKARLVAQGYSQEKGLDYDETFSPVVRHSTVRIILSLAAMNNWELRQLDVKNAFLHGDL 1103
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A445H2V6_GLYSO (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Glycine soja TaxID=3848 RepID=A0A445H2V6_GLYSO) HSP 1 Score: 79.0 bits (193), Expect = 1.790e-14 Identity = 38/125 (30.40%), Postives = 62/125 (49.60%), Query Frame = 1
Query: 28 VEPKNHREAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
VEP ++ EA + W + E+Q L N W P +K + +YK K DG++++YK RL A G Q++G + FP + +++L +AA+ W LR +D A+L +D
Sbjct: 7 VEPSSYAEASQH---DCWIKAMNAELQALQSNDTWRLTPLPPHKTAIGCRWIYKIKHRVDGSIERYKARLVAKGYTQMEGLDYLDTFFPVAKLTTVRLLLALAALNQWHLRQLDVNNAFLHGELD 128
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Match: A0A4Y1QYH0_PRUDU (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1QYH0_PRUDU) HSP 1 Score: 78.6 bits (192), Expect = 2.620e-14 Identity = 41/124 (33.06%), Postives = 65/124 (52.42%), Query Frame = 1
Query: 31 EPKNHREAQASPEWEHW*RVEEVEIQGLIHNGVWMQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQASFPAPAAASTKMMLLIAAIQDWELRHVDFEQAYLQAPID 402
EP + + A S EW + + EI L G W+ V P +K ++ + +YK K DG+V +YK RL A G Q GF F + P + +++L IAA+ W+LR +D + A+L ++
Sbjct: 553 EPSSFKVASFSSEWR---QAMKEEIDALHMQGTWILVPSPGDKNIIGSKWVYKIKRNPDGSVGRYKARLVAQGFSQEPGFDFGETFSPVVRHTTVRLVLSIAAMNQWKLRQLDVKNAFLHGDLE 673 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17124.3979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17124.3979.1 >prot_H-paniculata_contig17124.3979.1 ID=prot_H-paniculata_contig17124.3979.1|Name=mRNA_H-paniculata_contig17124.3979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp MQVERPNNKLVVSTMMLYKRKIGEDGNVDKYKCRLFAHGNRQIKGFHFQQback to top mRNA from alignment at H-paniculata_contig17124:4171..4575+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17124.3979.1 ID=mRNA_H-paniculata_contig17124.3979.1|Name=mRNA_H-paniculata_contig17124.3979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=405bp|location=Sequence derived from alignment at H-paniculata_contig17124:4171..4575+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17124:4171..4575+ >mRNA_H-paniculata_contig17124.3979.1 ID=mRNA_H-paniculata_contig17124.3979.1|Name=mRNA_H-paniculata_contig17124.3979.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig17124:4171..4575+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |