mRNA_H-paniculata_contig17123.3978.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17123.3978.1
Unique NamemRNA_H-paniculata_contig17123.3978.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17123.3978.1 vs. uniprot
Match: A0A6H5L453_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L453_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 6.550e-41
Identity = 61/80 (76.25%), Postives = 73/80 (91.25%), Query Frame = 1 
Query:    4 GTLGLPTGALFSPFAQLQPAPARISRQPILCTHCAAYPNPFCAVDASTGSWRCCFCKKYNPCYAEDFIGSSPSEHREAYP 243
            G+LGLPTGALF+PFA+LQP+PARI RQP+LCT C+AYP+PFC VD  TG WRCCFC+K NPCYAEDFIGSSP+EHR+++P
Sbjct:   26 GSLGLPTGALFAPFAELQPSPARIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKENPCYAEDFIGSSPAEHRDSFP 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17123.3978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L453_9PHAE6.550e-4176.25Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17123contigH-paniculata_contig17123:253..516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.6
Seed ortholog evalue2.1e-07
Seed eggNOG ortholog296587.XP_002505903.1
KEGG koko:K14006
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transport protein
EggNOG OGs37NTS@33090,COG5047@1,KOG1986@2759
COG Functional cat.U
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929352.3099499-CDS-H-paniculata_contig17123:252..5161622929352.3099499-CDS-H-paniculata_contig17123:252..516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17123 253..516 -
1691480826.7180777-CDS-H-paniculata_contig17123:252..5161691480826.7180777-CDS-H-paniculata_contig17123:252..516Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17123 253..516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17123.3978.1prot_H-paniculata_contig17123.3978.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17123 253..516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17123.3978.1

>prot_H-paniculata_contig17123.3978.1 ID=prot_H-paniculata_contig17123.3978.1|Name=mRNA_H-paniculata_contig17123.3978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
TGTLGLPTGALFSPFAQLQPAPARISRQPILCTHCAAYPNPFCAVDASTG
SWRCCFCKKYNPCYAEDFIGSSPSEHREAYPGGYTWVI
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mRNA from alignment at H-paniculata_contig17123:253..516-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17123.3978.1 ID=mRNA_H-paniculata_contig17123.3978.1|Name=mRNA_H-paniculata_contig17123.3978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at H-paniculata_contig17123:253..516- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGGCACCCTAGGTCTGCCCACGGGAGCGCTCTTCTCTCCCTTCGCGCA
GCTGCAGCCCGCCCCCGCGCGGATCTCTCGCCAGCCCATCTTGTGCACGC
ACTGCGCAGCCTACCCCAATCCGTTCTGCGCCGTGGACGCGTCTACGGGT
AGCTGGCGGTGCTGCTTCTGCAAGAAGTACAACCCATGCTACGCCGAGGA
TTTCATCGGCTCGAGCCCATCGGAGCACCGTGAGGCTTACCCCGGTGGGT
ATACATGGGTAATT
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Coding sequence (CDS) from alignment at H-paniculata_contig17123:253..516-

>mRNA_H-paniculata_contig17123.3978.1 ID=mRNA_H-paniculata_contig17123.3978.1|Name=mRNA_H-paniculata_contig17123.3978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig17123:253..516- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACAGGCACCCTAGGTCTGCCCACGGGAGCGCTCTTCTCTCCCTTCGCGCA
GCTGCAGCCCGCCCCCGCGCGGATCTCTCGCCAGCCCATCTTGTGCACGC
ACTGCGCAGCCTACCCCAATCCGTTCTGCGCCGTGGACGCGTCTACGGGT
AGCTGGCGGTGCTGCTTCTGCAAGAAGTACAACCCATGCTACGCCGAGGA
TTTCATCGGCTCGAGCCCATCGGAGCACCGTGAGGCTTACCCCGGTGGGT
ATACATGGGTAATTACAGGCACCCTAGGTCTGCCCACGGGAGCGCTCTTC
TCTCCCTTCGCGCAGCTGCAGCCCGCCCCCGCGCGGATCTCTCGCCAGCC
CATCTTGTGCACGCACTGCGCAGCCTACCCCAATCCGTTCTGCGCCGTGG
ACGCGTCTACGGGTAGCTGGCGGTGCTGCTTCTGCAAGAAGTACAACCCA
TGCTACGCCGAGGATTTCATCGGCTCGAGCCCATCGGAGCACCGTGAGGC
TTACCCCGGTGGGTATACATGGGTAATT
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