prot_H-paniculata_contig17123.3978.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17123.3978.1
Unique Nameprot_H-paniculata_contig17123.3978.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length88
Homology
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BLAST of mRNA_H-paniculata_contig17123.3978.1 vs. uniprot
Match: A0A6H5L453_9PHAE (Protein transport protein SEC23 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L453_9PHAE)

HSP 1 Score: 145 bits (366), Expect = 6.550e-41
Identity = 61/80 (76.25%), Postives = 73/80 (91.25%), Query Frame = 0 
Query:    2 GTLGLPTGALFSPFAQLQPAPARISRQPILCTHCAAYPNPFCAVDASTGSWRCCFCKKYNPCYAEDFIGSSPSEHREAYP 81
            G+LGLPTGALF+PFA+LQP+PARI RQP+LCT C+AYP+PFC VD  TG WRCCFC+K NPCYAEDFIGSSP+EHR+++P
Sbjct:   26 GSLGLPTGALFAPFAELQPSPARIPRQPVLCTFCSAYPSPFCRVDPGTGRWRCCFCEKENPCYAEDFIGSSPAEHRDSFP 105
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17123.3978.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L453_9PHAE6.550e-4176.25Protein transport protein SEC23 n=1 Tax=Ectocarpus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006895Zinc finger, Sec23/Sec24-typePFAMPF04810zf-Sec23_Sec24coord: 29..63
e-value: 5.8E-10
score: 39.1
NoneNo IPR availableGENE3D2.30.30.380coord: 26..62
e-value: 5.6E-13
score: 50.3
NoneNo IPR availableGENE3D2.60.40.1670coord: 4..25
e-value: 5.6E-13
score: 50.3
IPR037364Protein transport protein Sec23PANTHERPTHR11141PROTEIN TRANSPORT PROTEIN SEC23coord: 4..64
IPR036174Zinc finger, Sec23/Sec24-type superfamilySUPERFAMILY82919Zn-finger domain of Sec23/24coord: 19..69

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17123contigH-paniculata_contig17123:253..516 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17123.3978.1mRNA_H-paniculata_contig17123.3978.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17123 253..516 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17123.3978.1 ID=prot_H-paniculata_contig17123.3978.1|Name=mRNA_H-paniculata_contig17123.3978.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
TGTLGLPTGALFSPFAQLQPAPARISRQPILCTHCAAYPNPFCAVDASTG
SWRCCFCKKYNPCYAEDFIGSSPSEHREAYPGGYTWVI
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006895Znf_Sec23_Sec24
IPR037364Sec23
IPR036174Znf_Sec23_Sec24_sf